相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Genome-wide identification and characterization of NLR genes in lamprey (Lethenteron reissneri) and their responses to lipopolysaccharide/poly(I: C) challenge
Fan Hui et al.
MOLECULAR IMMUNOLOGY (2022)
Negative Regulator Nlrc3-like Maintain the Balanced Innate Immune Response During Mycobacterial Infection in Zebrafish
Liangfei Niu et al.
FRONTIERS IN IMMUNOLOGY (2022)
Genome-Wide Analysis of NLR Disease Resistance Genes in an Updated Reference Genome of Barley
Qian Li et al.
FRONTIERS IN GENETICS (2021)
Analysis of intraspecies diversity reveals a subset of highly variable plant immune receptors and predicts their binding sites
Daniil M. Prigozhin et al.
PLANT CELL (2021)
A mouse model for SARS-CoV-2-induced acute respiratory distress syndrome
Weiqi Hong et al.
SIGNAL TRANSDUCTION AND TARGETED THERAPY (2021)
The Laboratory Domestication of Zebrafish: From Diverse Populations to Inbred Substrains
Jaanus Suurvaeli et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
Genome assembly and characterization of a complex zfBED-NLR gene-containing disease resistance locus in Carolina Gold Select rice with Nanopore sequencing
Andrew C. Read et al.
PLOS GENETICS (2020)
Linking Virus Discovery to Immune Responses Visualized during Zebrafish Infections
Keir M. Balla et al.
CURRENT BIOLOGY (2020)
The NLR-Annotator Tool Enables Annotation of the Intracellular Immune Receptor Repertoire1[OPEN]
Burkhard Steuernagel et al.
PLANT PHYSIOLOGY (2020)
Innovation in Nucleotide-Binding Oligomerization-Like Receptor and Toll-Like Receptor Sensing Drives the Major Histocompatibility Complex-II Free Atlantic Cod Immune System
Xingkun Jin et al.
FRONTIERS IN IMMUNOLOGY (2020)
Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases
Ole K. Torresen et al.
NUCLEIC ACIDS RESEARCH (2019)
Genomic architecture of haddock (Melanogrammus aeglefinus) shows expansions of innate immune genes and short tandem repeats
Ole K. Torresen et al.
BMC GENOMICS (2018)
A cold-blooded view of adaptive immunity
Martin F. Flajnik
NATURE REVIEWS IMMUNOLOGY (2018)
Evolutionary Convergence and Divergence in NLR Function and Structure
Etienne Meunier et al.
TRENDS IN IMMUNOLOGY (2017)
Structurally distinct Arabidopsis thaliana NLR immune receptors recognize tandem WY domains of an oomycete effector
Sandra Goritschnig et al.
NEW PHYTOLOGIST (2016)
Alternative haplotypes of antigen processing genes in zebrafish diverged early in vertebrate evolution
Sean C. McConnell et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Intracellular innate immune surveillance devices in plants and animals
Jonathan D. G. Jones et al.
SCIENCE (2016)
Structure and evolutionary history of a large family of NLR proteins in the zebrafish
Kerstin Howe et al.
OPEN BIOLOGY (2016)
A De Novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong Synteny
Boas Pucker et al.
PLOS ONE (2016)
The Ensembl Variant Effect Predictor
William McLaren et al.
GENOME BIOLOGY (2016)
Sambamba: fast processing of NGS alignment formats
Artem Tarasov et al.
BIOINFORMATICS (2015)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
DOSE: an R/Bioconductor package for disease ontology semantic and enrichment analysis
Guangchuang Yu et al.
BIOINFORMATICS (2015)
bwtool: a tool for bigWig files
Andy Pohl et al.
BIOINFORMATICS (2014)
A Defined Zebrafish Line for High-Throughput Genetics and Genomics: NHGRI-1
Matthew C. LaFave et al.
GENETICS (2014)
Wild Sex in Zebrafish: Loss of the Natural Sex Determinant in Domesticated Strains
Catherine A. Wilson et al.
GENETICS (2014)
Multiple divergent haplotypes express completely distinct sets of class I MHC genes in zebrafish
Sean C. McConnell et al.
IMMUNOGENETICS (2014)
Joint Variant and De Novo Mutation Identification on Pedigrees from High-Throughput Sequencing Data
John G. Cleary et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2014)
Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls
Justin M. Zook et al.
NATURE BIOTECHNOLOGY (2014)
Comprehensive variation discovery in single human genomes
Neil I. Weisenfeld et al.
NATURE GENETICS (2014)
deepTools: a flexible platform for exploring deep-sequencing data
Fidel Ramirez et al.
NUCLEIC ACIDS RESEARCH (2014)
Genomic evolution and polymorphism: Segmental duplications and haplotypes at 108 regions on 21 chromosomes
Craig A. McLure et al.
GENOMICS (2013)
The zebrafish reference genome sequence and its relationship to the human genome
Kerstin Howe et al.
NATURE (2013)
A Sequence-Based Variation Map of Zebrafish
Ashok Patowary et al.
ZEBRAFISH (2013)
Fifty Shades of Immune Defense
Michael F. Criscitiello et al.
PLOS PATHOGENS (2013)
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
Guangchuang Yu et al.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2012)
Extensive genetic diversity and substructuring among zebrafish strains revealed through copy number variant analysis
Kim H. Brown et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Pybedtools: a flexible Python library for manipulating genomic datasets and annotations
Ryan K. Dale et al.
BIOINFORMATICS (2011)
NLR functions in plant and animal immune systems: so far and yet so close
Takaki Maekawa et al.
NATURE IMMUNOLOGY (2011)
REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
Fran Supek et al.
PLOS ONE (2011)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
High-throughput cell transplantation establishes that tumor-initiating cells are abundant in zebrafish T-cell acute lymphoblastic leukemia
Alexandra C. H. Smith et al.
BLOOD (2010)
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
GENOME RESEARCH (2010)
Innate immunity
Stuart E. Turvey et al.
JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY (2010)
Origins and functional impact of copy number variation in the human genome
Donald F. Conrad et al.
NATURE (2010)
Generation of clonal zebrafish lines and transplantable hepatic tumors
Igor Mizgirev et al.
NATURE PROTOCOLS (2010)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
A genomic view of the NOD-like receptor family in teleost fish: identification of a novel NLR subfamily in zebrafish
Kerry J. Laing et al.
BMC EVOLUTIONARY BIOLOGY (2008)
Variation analysis and gene annotation of eight MHC haplotypes: The MHC haplotype project
Roger Horton et al.
IMMUNOGENETICS (2008)
Genetic variation in the zebrafish
V Guryev et al.
GENOME RESEARCH (2006)
Reconstructing immune phylogeny: New perspectives
GW Litman et al.
NATURE REVIEWS IMMUNOLOGY (2005)