相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Nucleolar histone deacetylases HDT1, HDT2, and HDT3 regulate plant reproductive development
Yu Luo et al.
JOURNAL OF GENETICS AND GENOMICS (2022)
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences
Yasset Perez-Riverol et al.
NUCLEIC ACIDS RESEARCH (2022)
Abscisic acid negatively regulates the Polycomb-mediated H3K27me3 through the PHD-finger protein, VIL1
Wei Zong et al.
NEW PHYTOLOGIST (2022)
Progressive chromatin silencing of ABA biosynthesis genes permits seed germination in Arabidopsis
Deyue Yang et al.
PLANT CELL (2022)
Cold-induced Arabidopsis FRIGIDA nuclear condensates for FLC repression
Pan Zhu et al.
NATURE (2021)
Redox feedback regulation of ANAC089 signaling alters seed germination and stress response
Pablo Albertos et al.
CELL REPORTS (2021)
Combinations of maternal-specific repressive epigenetic marks in the endosperm control seed dormancy
Hikaru Sato et al.
ELIFE (2021)
Polycomb Repressive Complex 2 and KRYPTONITE regulate pathogen-induced programmed cell death in Arabidopsis
Eva Dvorak Tomastikova et al.
PLANT PHYSIOLOGY (2021)
HISTONE DEACETYLASE 9 Functions with Polycomb Silencing to Repress FLOWERING LOCUS C Expression
Xiaolin Zeng et al.
PLANT PHYSIOLOGY (2020)
Integrative analysis of reference epigenomes in 20 rice varieties
Lun Zhao et al.
NATURE COMMUNICATIONS (2020)
Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin
Michael Borg et al.
NATURE CELL BIOLOGY (2020)
The H3K27me3 Demethylase RELATIVE OF EARLY FLOWERING6 Suppresses Seed Dormancy by Inducing Abscisic Acid Catabolism
Huhui Chen et al.
PLANT PHYSIOLOGY (2020)
Low-input chromatin profiling in Arabidopsis endosperm using CUT&RUN
Xiao-yu Zheng et al.
PLANT REPRODUCTION (2019)
The H3K27me3 demethylase REF6 promotes leaf senescence through directly activating major senescence regulatory and functional genes in Arabidopsis
Xiaolei Wang et al.
PLOS GENETICS (2019)
Non-canonical RNA-directed DNA methylation participates in maternal and environmental control of seed dormancy
Mayumi Iwasaki et al.
ELIFE (2019)
Epigenetic signatures associated with imprinted paternally expressed genes in the Arabidopsis endosperm
Jordi Moreno-Romero et al.
GENOME BIOLOGY (2019)
Telobox motifs recruit CLF/SWN-PRC2 for H3K27me3 deposition via TRB factors in Arabidopsis
Yue Zhou et al.
NATURE GENETICS (2018)
Canonical and Noncanonical Actions of Arabidopsis Histone Deacetylases in Ribosomal RNA Processing
Xiangsong Chen et al.
PLANT CELL (2018)
NAC Transcription Factors ANAC087 and ANAC046 Control Distinct Aspects of Programmed Cell Death in the Arabidopsis Columella and Lateral Root Cap
Marlies Huysmans et al.
PLANT CELL (2018)
Cis and trans determinants of epigenetic silencing by Polycomb repressive complex 2 in Arabidopsis
Jun Xiao et al.
NATURE GENETICS (2017)
A Tripartite Amplification Loop Involving the Transcription Factor WRKY75, Salicylic Acid, and Reactive Oxygen Species Accelerates Leaf Senescence
Pengru Guo et al.
PLANT CELL (2017)
DNA replication-coupled histone modification maintains Polycomb gene silencing in plants
Danhua Jiang et al.
SCIENCE (2017)
The WD40 Domain Protein MSI1 Functions in a Histone Deacetylase Complex to Fine-Tune Abscisic Acid Signaling
Saher Mehdi et al.
PLANT CELL (2016)
Parental epigenetic asymmetry of PRC2-mediated histone modifications in the Arabidopsis endosperm
Jordi Moreno-Romero et al.
EMBO JOURNAL (2016)
A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis
Wenya Yuan et al.
NATURE GENETICS (2016)
Diurnal changes in the histone H3 signature H3K9ac|H3K27ac|H3S28p are associated with diurnal gene expression in Arabidopsis
Katja Baerenfaller et al.
PLANT CELL AND ENVIRONMENT (2016)
Chromosome-level assembly of Arabidopsis thaliana Ler reveals the extent of translocation and inversion polymorphisms
Luis Zapata et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Arabidopsis transcriptional repressor VAL1 triggers Polycomb silencing at FLC during vernalization
Julia I. Questa et al.
SCIENCE (2016)
Dormancy-specific imprinting underlies maternal inheritance of seed dormancy in Arabidopsis thaliana
Urszula Piskurewicz et al.
ELIFE (2016)
Auxin production in the endosperm drives seed coat development in Arabidopsis
Duarte D. Figueiredo et al.
ELIFE (2016)
Sambamba: fast processing of NGS alignment formats
Artem Tarasov et al.
BIOINFORMATICS (2015)
Abscisic acid transporters cooperate to control seed germination
Joohyun Kang et al.
NATURE COMMUNICATIONS (2015)
Paternally expressed imprinted genes establish postzygotic hybridization barriers in Arabidopsis thaliana
Philip Wolff et al.
eLife (2015)
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Yang Liao et al.
BIOINFORMATICS (2014)
SAINTexpress: Improvements and additional features in Significance Analysis of INTeractome software
Guoci Teo et al.
JOURNAL OF PROTEOMICS (2014)
deepTools: a flexible platform for exploring deep-sequencing data
Fidel Ramirez et al.
NUCLEIC ACIDS RESEARCH (2014)
Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting
Daniela Pignatta et al.
ELIFE (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
HD2C interacts with HDA6 and is involved in ABA and salt stress response in Arabidopsis
Ming Luo et al.
JOURNAL OF EXPERIMENTAL BOTANY (2012)
Differential oestrogen receptor binding is associated with clinical outcome in breast cancer
Caryn S. Ross-Innes et al.
NATURE (2012)
Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel
Matthew W. Horton et al.
NATURE GENETICS (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Integrative genomics viewer
James T. Robinson et al.
NATURE BIOTECHNOLOGY (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
A gene regulatory network controlled by the NAC transcription factor ANAC092/AtNAC2/ORE1 during salt-promoted senescence
Salma Balazadeh et al.
PLANT JOURNAL (2010)
Natural variation for seed dormancy in Arabidopsis is regulated by additive genetic and molecular pathways
Leonie Bentsink et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
A seed coat bedding assay shows that RGL2-dependent release of abscisic acid by the endosperm controls embryo growth in Arabidopsis dormant seeds
Keun Pyo Lee et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
A clustering approach for identification of enriched domains from histone modification ChIP-Seq data
Chongzhi Zang et al.
BIOINFORMATICS (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
ProteoWizard: open source software for rapid proteomics tools development
Darren Kessner et al.
BIOINFORMATICS (2008)
Arabidopsis WRKY38 and WRKY62 Transcription Factors Interact with Histone Deacetylase 19 in Basal Defense
Kang-Chang Kim et al.
PLANT CELL (2008)
Amino acid polymorphisms in Arabidopsis phytochrome B cause differential responses to light
Daniele L. Filiault et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
The PHD finger protein VRN5 functions in the epigenetic silencing of Arabidopsis FLC
Thomas Greb et al.
CURRENT BIOLOGY (2007)
Erasure of histone acetylation by Arabidopsis HDA6 mediates large-scale gene silencing in nucleolar dominance
Keith Earley et al.
GENES & DEVELOPMENT (2006)
A fast and flexible statistical model for large-scale population genotype data: Applications to inferring missing genotypes and haplotypic phase
P Scheet et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2006)
In-gel digestion for mass spectrometric characterization of proteins and proteomes
Andrej Shevchenko et al.
NATURE PROTOCOLS (2006)
Cold and light control seed germination through the bHLH transcription factor SPATULA
S Penfield et al.
CURRENT BIOLOGY (2005)
Vernalization in Arabidopsis thaliana is mediated by the PHD finger protein VIN3
SB Sung et al.
NATURE (2004)
The Polycomb-group protein MEDEA regulates seed development by controlling expression of the MADS-box gene PHERES1
C Köhler et al.
GENES & DEVELOPMENT (2003)
分享论文
