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Sudhir Kumar et al.
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Yashar S. Niknafs et al.
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Yi Zheng et al.
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Jens Keilwagen et al.
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Felipe A. Simao et al.
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Michael I. Love et al.
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Carson Holt et al.
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Olivier Hamant et al.
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Sylvain Foissac et al.
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KC McGrath et al.
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A Lomsadze et al.
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BJ Haas et al.
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SP Venglat et al.
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