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Alex Bateman et al.
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Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer
Miho Oka et al.
GENOME BIOLOGY (2021)
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Thomas Gonatopoulos-Pournatzis et al.
MOLECULAR CELL (2020)
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John W. Phillips et al.
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Sophie C. Bonnal et al.
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Zhanbing Zhang et al.
Aging-US (2020)
Alternative splicing and cancer: insights, opportunities, and challenges from an expanding view of the transcriptome
Sara Cherry et al.
GENES & DEVELOPMENT (2020)
Opportunities and challenges in long-read sequencing data analysis
Shanika L. Amarasinghe et al.
GENOME BIOLOGY (2020)
Next-generation characterization of the Cancer Cell Line Encyclopedia
Mahmoud Ghandi et al.
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Organoid-Induced Differentiation of Conventional T Cells from Human Pluripotent Stem Cells
Amelie Montel-Hagen et al.
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Alternative mRNA splicing in cancer immunotherapy
Luke Frankiw et al.
NATURE REVIEWS IMMUNOLOGY (2019)
The Expanding Landscape of Alternative Splicing Variation in Human Populations
Eddie Park et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2018)
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Chung-Han Lee et al.
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Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients
Andre Kahles et al.
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Alicia C. Smart et al.
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Noncoding regions are the main source of targetable tumor-specific antigens
Celine M. Laumont et al.
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SRRM4 Drives Neuroendocrine Transdifferentiation of Prostate Adenocarcinoma Under Androgen Receptor Pathway Inhibition
Yinan Li et al.
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Mass Spectrometry Profiling of HLA-Associated Peptidomes in Mono-allelic Cells Enables More Accurate Epitope Prediction
Jennifer G. Abelin et al.
IMMUNITY (2017)
Integrative clinical genomics of metastatic cancer
Dan R. Robinson et al.
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Personalized RNA mutanome vaccines mobilize poly-specific therapeutic immunity against cancer
Ugur Sahin et al.
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Antigen presentation profiling reveals recognition of lymphoma immunoglobulin neoantigens
Michael S. Khodadoust et al.
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Genetic effects on gene expression across human tissues
Francois Aguet et al.
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An immunogenic personal neoantigen vaccine for patients with melanoma
Patrick A. Ott et al.
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Neoantigen prediction and the need for validation
Antonella Vitiello et al.
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Generation of mature T cells from human hematopoietic stem and progenitor cells in artificial thymic organoids
Christopher S. Seet et al.
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Panagiotis J. Vlachostergios et al.
CURRENT ONCOLOGY REPORTS (2017)
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Rachel Marty et al.
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Mark Yarchoan et al.
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Divergent clonal evolution of castration-resistant neuroendocrine prostate cancer
Himisha Beltran et al.
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Robert L. Grossman et al.
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Celine M. Laumont et al.
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Dan Robinson et al.
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Adoptive cell transfer as personalized immunotherapy for human cancer
Steven A. Rosenberg et al.
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Neoantigens in cancer immunotherapy
Ton N. Schumacher et al.
SCIENCE (2015)
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Beatriz M. Carreno et al.
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The immune epitope database (IEDB) 3.0
Randi Vita et al.
NUCLEIC ACIDS RESEARCH (2015)
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Yang Liao et al.
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A Highly Conserved Program of Neuronal Microexons Is Misregulated in Autistic Brains
Manuel Irimia et al.
CELL (2014)
rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data
Shihao Shen et al.
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MS-GF plus makes progress towards a universal database search tool for proteomics
Sangtae Kim et al.
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The many faces of neuroendocrine differentiation in prostate cancer progression
Stephane Terry et al.
FRONTIERS IN ONCOLOGY (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
Tumour antigens recognized by T lymphocytes: at the core of cancer immunotherapy
Pierre G. Coulie et al.
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STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
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MBNL proteins repress ES-cell-specific alternative splicing and reprogramming
Hong Han et al.
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The Cancer Genome Atlas Pan-Cancer analysis project
John N. Weinstein et al.
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The Genotype-Tissue Expression (GTEx) project
John Lonsdale et al.
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GENCODE: The reference human genome annotation for The ENCODE Project
Jennifer Harrow et al.
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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
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HLA typing from RNA-Seq sequence reads
Sebastian Boegel et al.
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Analysis and design of RNA sequencing experiments for identifying isoform regulation
Yarden Katz et al.
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Use of CD137 to Study the Full Repertoire of CD8+T Cells Without the Need to Know Epitope Specificities
Matthias Woelfl et al.
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Activation-induced expression of CD137 permits detection, isolation, and expansion of the full repertoire of CD8+ T cells responding to antigen without requiring knowledge of epitope specificities
Matthias Wolfl et al.
BLOOD (2007)
Cancer regression in patients after transfer of genetically engineered lymphocytes
Richard A. Morgan et al.
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