相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Population structure, biogeography and transmissibility of Mycobacterium tuberculosis
Luca Freschi et al.
NATURE COMMUNICATIONS (2021)
Twelve years of SAMtools and BCFtools
Petr Danecek et al.
GIGASCIENCE (2021)
Phylogenomics of Mycobacterium africanum reveals a new lineage and a complex evolutionary history
Mireia Coscolla et al.
MICROBIAL GENOMICS (2021)
Reversible gene silencing through frameshift indels and frameshift scars provide adaptive plasticity for Mycobacterium tuberculosis
Aditi Gupta et al.
NATURE COMMUNICATIONS (2021)
A Comprehensive Map of Mycobacterium tuberculosis Complex Regions of Difference
D. Bespiatykh et al.
MSPHERE (2021)
New insights into the mycobacterial PE and PPE proteins provide a framework for future research
Louis S. Ates
MOLECULAR MICROBIOLOGY (2020)
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
Bui Quang Minh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
Population structure and genetic diversity of Mycobacterium tuberculosis in Ecuador
Daniel Garzon-Chavez et al.
SCIENTIFIC REPORTS (2020)
Robust barcoding and identification of Mycobacterium tuberculosis lineages for epidemiological and clinical studies
Gary Napier et al.
GENOME MEDICINE (2020)
Host adaptation and convergent evolution increases antibiotic resistance without loss of virulence in a major human pathogen
Alicia Fajardo-Lubian et al.
PLOS PATHOGENS (2019)
The functional convergence of antibiotic resistance in β-lactamases is not conferred by a simple convergent substitution of amino acid
Vivek Keshri et al.
EVOLUTIONARY APPLICATIONS (2019)
Genomewide Assessment of Mycobacterium tuberculosis Conditionally Essential Metabolic Pathways
Yusuke Minato et al.
MSYSTEMS (2019)
MUMmer4: A fast and versatile genome alignment system
Guillaume Marcais et al.
PLOS COMPUTATIONAL BIOLOGY (2018)
Global expansion of Mycobacterium tuberculosis lineage 4 shaped by colonial migration and local adaptation
Ola B. Brynildsrud et al.
SCIENCE ADVANCES (2018)
Comprehensive Essentiality Analysis of the Mycobacterium tuberculosis Genome via Saturating Transposon Mutagenesis
Michael A. DeJesus et al.
MBIO (2017)
Assemblytics: a web analytics tool for the detection of variants from an assembly
Maria Nattestad et al.
BIOINFORMATICS (2016)
Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineages
David Stucki et al.
NATURE GENETICS (2016)
The genomic signatures of Shigella evolution, adaptation and geographical spread
Hao Chung The et al.
NATURE REVIEWS MICROBIOLOGY (2016)
Selecting optimal partitioning schemes for phylogenomic datasets
Robert Lanfear et al.
BMC EVOLUTIONARY BIOLOGY (2014)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data
Tim Carver et al.
BIOINFORMATICS (2012)
Whole genome shotgun sequencing of one Colombian clinical isolate of Mycobacterium tuberculosis reveals DosR regulon gene deletions
Juan Pablo Isaza et al.
FEMS MICROBIOLOGY LETTERS (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
Heng Li
BIOINFORMATICS (2011)
Frequent Homologous Recombination Events in Mycobacterium tuberculosis PE/PPE Multigene Families: Potential Role in Antigenic Variability
Anis Karboul et al.
JOURNAL OF BACTERIOLOGY (2008)
The case for hypervirulence through gene deletion in Mycobacterium tuberculosis
Annemieke M. C. ten Bokum et al.
TRENDS IN MICROBIOLOGY (2008)
Reduced selection leads to accelerated gene loss in Shigella
Ruth Hershberg et al.
GENOME BIOLOGY (2007)
Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery
F Yang et al.
NUCLEIC ACIDS RESEARCH (2005)
Toxin-antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotes
DP Pandey et al.
NUCLEIC ACIDS RESEARCH (2005)
Complete genome sequence of the apicomplexan, Cryptosporidium parvum
MS Abrahamsen et al.
SCIENCE (2004)
Functional and evolutionary genomics of Mycobacterium tuberculosis:: Insights from genomic deletions in 100 strains
AG Tsolaki et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Escherichia coli in disguise:: molecular origins of Shigella
RT Lan et al.
MICROBES AND INFECTION (2002)