4.8 Article

DNA modifications impact natural transformation of Acinetobacter baumannii

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

Systematic and quantitative view of the antiviral arsenal of prokaryotes

Florian Tesson et al.

Summary: Bacteria and archaea have developed multiple antiviral mechanisms. Researchers have introduced a tool called DefenseFinder that can automatically detect known antiviral systems in prokaryotic genomes, and have shown that variations in antiviral strategies correlate with genome size, viral threat, and lifestyle traits.

NATURE COMMUNICATIONS (2022)

Article Microbiology

An expanded arsenal of immune systems that protect bacteria from phages

Adi Millman et al.

Summary: This study reports the discovery of 21 bacterial defense systems against phages. These systems contain domains involved in eukaryotic antiviral immunity and are widely distributed in microbial genomes. These findings contribute to our understanding of the defense mechanisms bacteria use against phage infection.

CELL HOST & MICROBE (2022)

Article Immunology

Bacterial origins of human cell-autonomous innate immune mechanisms

Tanita Wein et al.

Summary: This paper describes the elements of antiviral immunity that are conserved from bacteria to humans and presents possible evolutionary scenarios to explain this conservation.

NATURE REVIEWS IMMUNOLOGY (2022)

Review Microbiology

Type IV Pili: dynamic bacterial nanomachines

Courtney K. Ellison et al.

Summary: This review discusses recent progress in understanding the function, regulation, and mechanisms of T4P dynamics.

FEMS MICROBIOLOGY REVIEWS (2022)

Article Biochemical Research Methods

clinker & clustermap.js: automatic generation of gene cluster comparison figures

Cameron L. M. Gilchrist et al.

Summary: Genes involved in biological pathways are often found in gene clusters, and comparing these clusters can provide valuable insights into their function and evolutionary history. To simplify the tedious process of comparing and visualizing gene cluster similarity, a Python tool called clinker and a companion JavaScript library called clustermap.js have been developed to automatically generate accurate, interactive, publication-quality gene cluster comparison figures from sequence files.

BIOINFORMATICS (2021)

Article Microbiology

Pilus Production in Acinetobacter baumannii Is Growth Phase Dependent and Essential for Natural Transformation

Nina Vesel et al.

Summary: Acinetobacter baumannii is a hospital-acquired pathogen that poses a severe threat to human health due to its multidrug resistance and ability to rapidly evolve through natural transformation. This study identified a specific competence window in which A. baumannii can uptake external DNA, correlating this ability with the synthesis of type IV pili. The findings also showed that the TFP biogenesis in A. baumannii is regulated by systems homologous to Pseudomonas aeruginosa, impacting both piliation status and DNA uptake for transformation. These results highlight differences in TFP production and natural transformability within the Acinetobacter genus when compared to the model species A. baylyi.

JOURNAL OF BACTERIOLOGY (2021)

Article Biochemistry & Molecular Biology

Identification and classification of antiviral defence systems in bacteria and archaea with PADLOC reveals new system types

Leighton J. Payne et al.

Summary: PADLOC is a flexible and scalable open-source tool for identifying defense systems with high accuracy and sensitivity, allowing easy integration of new defense systems and successful identification of novel defense systems.

NUCLEIC ACIDS RESEARCH (2021)

Review Microbiology

The pan-immune system of bacteria: antiviral defence as a community resource

Aude Bernheim et al.

NATURE REVIEWS MICROBIOLOGY (2020)

Article Biochemical Research Methods

PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph

Guillaume Gautreau et al.

PLoS Computational Biology (2020)

Article Microbiology

Comparison of chitin-induced natural transformation in pandemicVibrio choleraeO1El Tor strains

Sandrine Stutzmann et al.

ENVIRONMENTAL MICROBIOLOGY (2020)

Article Multidisciplinary Sciences

Diverse enzymatic activities mediate antiviral immunity in prokaryotes

Linyi Gao et al.

SCIENCE (2020)

Article Genetics & Heredity

Mechanisms of DNA Uptake by Naturally Competent Bacteria

David Dubnau et al.

Annual Review of Genetics (2019)

Review Genetics & Heredity

Deciphering bacterial epigenomes using modern sequencing technologies

John Beaulaurier et al.

NATURE REVIEWS GENETICS (2019)

Article Microbiology

Fluorescence-Based Detection of Natural Transformation in Drug-Resistant Acinetobacter baumannii

Anne-Sophie Godeux et al.

JOURNAL OF BACTERIOLOGY (2018)

Article Multidisciplinary Sciences

Methylation-dependent DNA discrimination in natural transformation of Campylobacter jejuni

Jessica M. Beauchamp et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Multidisciplinary Sciences

Bacterial RadA is a DnaB-type helicase interacting with RecA to promote bidirectional D-loop extension

Lea Marie et al.

NATURE COMMUNICATIONS (2017)

Article Microbiology

Complete Genome Sequence and Methylome Analysis of Acinetobacter calcoaceticus 65

Alexey Fomenkov et al.

GENOME ANNOUNCEMENTS (2017)

Article Microbiology

Serum Albumin and Ca2+ Are Natural Competence Inducers in the Human Pathogen Acinetobacter baumannii

German Matias Traglia et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2016)

Article Microbiology

Intraspecies Transfer of the Chromosomal Acinetobacter baumannii blaNDM-1 Carbapenemase Gene

Thomas Krahn et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2016)

Review Microbiology

Evolutionary Ecology of Prokaryotic Immune Mechanisms

Stineke van Houte et al.

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2016)

Article Biochemistry & Molecular Biology

Horizontal DNA Transfer Mechanisms of Bacteria as Weapons of Intragenomic Conflict

Nicholas J. Croucher et al.

PLOS BIOLOGY (2016)

Review Genetics & Heredity

Horizontal gene transfer: building the web of life

Shannon M. Soucy et al.

NATURE REVIEWS GENETICS (2015)

Article Biochemical Research Methods

circlize implements and enhances circular visualization in R

Zuguang Gu et al.

BIOINFORMATICS (2014)

Article Evolutionary Biology

The Genomic Diversification of the Whole Acinetobacter Genus: Origins, Mechanisms, and Consequences

Marie Touchon et al.

GENOME BIOLOGY AND EVOLUTION (2014)

Review Microbiology

Bacterial transformation: distribution, shared mechanisms and divergent control

Calum Johnston et al.

NATURE REVIEWS MICROBIOLOGY (2014)

Review Microbiology

Diverse Functions of Restriction-Modification Systems in Addition to Cellular Defense

Kommireddy Vasu et al.

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2013)

Article Multidisciplinary Sciences

DNA-uptake machinery of naturally competent Vibrio cholerae

Patrick Seitz et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Review Biochemistry & Molecular Biology

Postreplication targeting of transformants by bacterial immune systems?

Calum Johnston et al.

TRENDS IN MICROBIOLOGY (2013)

Article Biotechnology & Applied Microbiology

Identification of Cj1051c as a Major Determinant for the Restriction Barrier of Campylobacter jejuni Strain NCTC11168

Jeffrey P. Holt et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)

Review Biochemistry & Molecular Biology

The cell pole: the site of cross talk between the DNA uptake and genetic recombination machinery

Dawit Kidane et al.

CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY (2012)

Article Biochemistry & Molecular Biology

Defining the DNA uptake specificity of naturally competent Haemophilus influenzae cells

Joshua Chang Mell et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Genetics & Heredity

The Regulatory Network of Natural Competence and Transformation of Vibrio cholerae

Mirella Lo Scrudato et al.

PLOS GENETICS (2012)

Article Microbiology

Naturally Competent Acinetobacter baumannii Clinical Isolate as a Convenient Model for Genetic Studies

Maria Soledad Ramirez et al.

JOURNAL OF CLINICAL MICROBIOLOGY (2010)

Article Multidisciplinary Sciences

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

Aaron E. Darling et al.

PLOS ONE (2010)

Article Biochemistry & Molecular Biology

Transcription regulation of restriction-modification system Esp1396I

Ekaterina Bogdanova et al.

NUCLEIC ACIDS RESEARCH (2009)

Editorial Material Immunology

Federal funding for the study of antimicrobial resistance in nosocomial pathogens: No ESKAPE

Louis B. Rice

JOURNAL OF INFECTIOUS DISEASES (2008)

Article Genetics & Heredity

Comparative genomics of multidrug resistance in Acinetobacter baumannii

Pierre-Edouard Fournier et al.

PLOS GENETICS (2006)

Review Microbiology

Mechanisms of, and barriers to, horizontal gene transfer between bacteria

CM Thomas et al.

NATURE REVIEWS MICROBIOLOGY (2005)

Article Biochemistry & Molecular Biology

Transcription regulation of the EcoRV restriction-modification system

E Semenova et al.

NUCLEIC ACIDS RESEARCH (2005)

Review Microbiology

DNA uptake during bacterial transformation

I Chen et al.

NATURE REVIEWS MICROBIOLOGY (2004)

Article Multidisciplinary Sciences

The Vibrio cholerae chitin utilization program

KL Meibom et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biochemistry & Molecular Biology

Esp1396I restriction-modification system:: structural organization and mode of regulation

E Cesnaviciene et al.

NUCLEIC ACIDS RESEARCH (2003)