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Goekcen Eraslan et al.
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Amit Zeisel et al.
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F. Alexander Wolf et al.
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Sena Bluemel et al.
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Paul A. Roche et al.
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Daniel R. Chang et al.
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Expression of TM4SF10, a claudin/EMP/PMP22 family cell junction protein, during mouse kidney development and podocyte differentiation
Leslie A. Bruggeman et al.
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Reg I-knockout mice reveal its role in regulation of cell growth that is required in generation and maintenance of the villous structure of small intestine
T. Ose et al.
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The cytokine activity of HMGB1
H Yang et al.
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STRING: known and predicted protein-protein associations, integrated and transferred across organisms
C von Mering et al.
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