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Andrew J. Miles et al.
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Ashley M. Groshong et al.
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Sahar Melamed et al.
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Dan Drecktrah et al.
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Establishment of an in vitro RNA polymerase transcription system: a new tool to study transcriptional activation in Borrelia burgdorferi
William K. Boyle et al.
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The intergenic small non-coding RNA ittA is required for optimal infectivity and tissue tropism in Borrelia burgdorferi
Diana N. Medina-Pérez et al.
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How RNA-Binding Proteins Interact with RNA: Molecules and Mechanisms
Meredith Corley et al.
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RNA-binding activity and regulatory functions of the emerging sRNA-binding protein ProQ
Erik Holmqvist et al.
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Posttranscription Initiation Control of Gene Expression Mediated by Bacterial RNA-Binding Proteins
Paul Babitzke et al.
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Martina Valentini et al.
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Jie Li et al.
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Kevin S. Brandt et al.
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Jessica L. Kostick-Dunn et al.
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The Stringent Response-Regulated sRNA Transcriptome of Borrelia burgdorferi
Dan Drecktrah et al.
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Positive and Negative Regulation of Glycerol Utilization by the c-di-GMP Binding Protein PIzA in Borrelia burgdorferi
Jun-Jie Zhang et al.
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Philip P. Adams et al.
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ProQ/FinO-domain proteins: another ubiquitous family of RNA matchmakers?
Mikolaj Olejniczak et al.
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Cyclic di-GMP: second messenger extraordinaire
Urs Jenal et al.
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Structure of the Escherichia coli ProQ RNA-binding protein
Grecia M. Gonzalez et al.
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Molecular mechanism of mRNA repression in trans by a ProQ-dependent small RNA
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Grad-seq guides the discovery of ProQ as a major small RNA-binding protein
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Katherine L. Mallory et al.
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William K. Arnold et al.
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Melissa J. Caimano et al.
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Structural characterization and modeling of the Borrelia burgdorferi hybrid histidine kinase Hk1 periplasmic sensor: A system for sensing small molecules associated with tick feeding
William J. Bauer et al.
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Julia V. Bugrysheva et al.
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The structure, function and evolution of proteins that bind DNA and RNA
William H. Hudson et al.
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The double-stranded transcriptome of Escherichia coli
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Elizabeth A. Novak et al.
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Martina Doetsch et al.
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Valentina Stelitano et al.
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Sabine Stampfl et al.
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RNA-Mediated Regulation in Pathogenic Bacteria
Isabelle Caldelari et al.
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Of ticks, mice and men: understanding the dual-host lifestyle of Lyme disease spirochaetes
Justin D. Radolf et al.
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Hfq proximity and orientation controls RNA annealing
Subrata Panja et al.
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Riboswitches and the RNA World
Ronald R. Breaker
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ProQ Is an RNA Chaperone that Controls ProP Levels in Escherichia coli
Steven G. Chaulk et al.
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Transient RNA-protein interactions in RNA folding
Martina Doetsch et al.
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Joshua E. Pitzer et al.
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Analysis of the HD-GYP Domain Cyclic Dimeric GMP Phosphodiesterase Reveals a Role in Motility and the Enzootic Life Cycle of Borrelia burgdorferi
Syed Z. Sultan et al.
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The Hybrid Histidine Kinase Hk1 Is Part of a Two-Component System That Is Essential for Survival of Borrelia burgdorferi in Feeding Ixodes scapularis Ticks
Melissa J. Caimano et al.
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Regulation by Small RNAs in Bacteria: Expanding Frontiers
Gisela Storz et al.
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The diguanylate cyclase, Rrp1, regulates critical steps in the enzootic cycle of the Lyme disease spirochetes
Jessica L. Kostick et al.
MOLECULAR MICROBIOLOGY (2011)
The RNA annealing mechanism of the HIV-1 Tat peptide: conversion of the RNA into an annealing-competent conformation
Martina Doetsch et al.
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Cyclic di-GMP is Essential for the Survival of the Lyme Disease Spirochete in Ticks
Ming He et al.
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Identification and molecular characterization of a cyclic-di-GMP effector protein, PlzA (BB0733): additional evidence for the existence of a functional cyclic-di-GMP regulatory network in the Lyme disease spirochete, Borrelia burgdorferi
John C. Freedman et al.
FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY (2010)
Identification and function of the RNA chaperone Hfq in the Lyme disease spirochete Borrelia burgdorferi
Meghan C. Lybecker et al.
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Analysis of a Borrelia burgdorferi phosphodiesterase demonstrates a role for cyclic-di-guanosine monophosphate in motility and virulence
Syed Z. Sultan et al.
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Mechanisms of StpA-mediated RNA remodeling
Martina Doetsch et al.
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RNA remodeling and gene regulation by cold shock proteins
Sangita Phadtare et al.
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TbRGG2 facilitates kinetoplastid RNA editing initiation and progression past intrinsic pause sites
Michelle L. Ammerman et al.
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Star M. Dunham-Ems et al.
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Rrp1, a cyclic-di-GMP-producing response regulator, is an important regulator of Borrelia burgdorferi core cellular functions
Elizabeth A. Rogers et al.
MOLECULAR MICROBIOLOGY (2009)
Principles of c-di-GMP signalling in bacteria
Regine Hengge
NATURE REVIEWS MICROBIOLOGY (2009)
Transcriptional interplay among the regulators Rrp2, RpoN and RpoS in Borrelia burgdorferi
Zhiming Ouyang et al.
MICROBIOLOGY-SGM (2008)
Get the message out: Cyclic-Di-GMP regulates multiple levels of flagellum-based motility
Alan J. Wolfe et al.
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Dissecting RNA chaperone activity
Lukas Rajkowitsch et al.
RNA (2007)
Coupling RNA annealing and strand displacement: a FRET-based microplate reader assay for RNA chaperone activity (vol 43, pg 304, 2007)
L. Rajkowitsch et al.
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RNA chaperones, RNA annealers and RNA helicases
Lukas Rajkowitsch et al.
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Temperature-induced regulation of RpoS by a small RNA in Borrelia burgdorferi
Meghan C. Lybecker et al.
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RNA chaperone activity and RNA-binding properties of the E-coli protein StpA
Oliver Mayer et al.
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c-di-GMP-mediated regulation of virulence and biofilm formation
Peggy A. Cotter et al.
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Melissa J. Calmano et al.
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A reference database for circular dichroism spectroscopy covering fold and secondary structure space
Jonathan G. Lees et al.
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Kentaro Nakaminami et al.
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Regulation of translation via mRNA structure in prokaryotes and eukaryotes
M Kozak
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Assays for the RNA chaperone activity of proteins
L Rajkowitsch et al.
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Borrelia burgdorferi σ54 is required for mammalian infection and vector transmission but not for tick colonization
MA Fisher et al.
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Bacterial small RNA regulators
N Majdalani et al.
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STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins
M Heinig et al.
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AANT: the Amino Acid-Nucleotide Interaction Database
MM Hoffman et al.
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Three amino acids in Escherichia coli CspE surface-exposed aromatic patch are critical for nucleic acid melting activity leading to transcription antitermination and cold acclimation of cells
S Phadtare et al.
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Novel domains of the prokaryotic two-component signal transduction systems
MY Galperin et al.
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Structure-based analysis of Protein-RNA interactions using the program ENTANGLE
J Allers et al.
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Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level
NM Luscombe et al.
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Protein-RNA interactions: a structural analysis
S Jones et al.
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Estimation of protein secondary structure from circular dichroism spectra: Comparison of CONTIN, SELCON, and CDSSTR methods with an expanded reference set
N Sreerama et al.
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Escherichia coli CspA-family RNA chaperones are transcription antiterminators
WH Bae et al.
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