相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Absolute quantification of chromosome copy numbers in the polyploid macronucleus of Tetrahymena thermophila at the single-cell level
Yuanyuan Zhou et al.
JOURNAL OF EUKARYOTIC MICROBIOLOGY (2022)
An Extremely Streamlined Macronuclear Genome in the Free-Living Protozoan Fabrea salina
Bing Zhang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2022)
Whokaryote: distinguishing eukaryotic and prokaryotic contigs in metagenomes based on gene structure
Lotte J. U. Pronk et al.
MICROBIAL GENOMICS (2022)
Twelve years of SAMtools and BCFtools
Petr Danecek et al.
GIGASCIENCE (2021)
A strategy for complete telomere-to-telomere assembly of ciliate macronuclear genome using ultra-high coverage Nanopore data
Guangying Wang et al.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2021)
ParameciumDB 2019: integrating genomic data across the genus for functional and evolutionary biology
Olivier Arnaiz et al.
NUCLEIC ACIDS RESEARCH (2020)
Bacteria-Derived Hemolysis-Related Genes Widely Exist in Scuticociliates
Jing Zhang et al.
MICROORGANISMS (2020)
Single-Cell Genomic Sequencing of Three Peritrichs (Protista, Ciliophora) Reveals Less Biased Stop Codon Usage and More Prevalent Programmed Ribosomal Frameshifting Than in Other Ciliates
Xiao Chen et al.
FRONTIERS IN MARINE SCIENCE (2020)
Insights into the origin and evolution of Peritrichia (Oligohymenophorea, Ciliophora) based on analyses of morphology and phylogenomics
Chuan-Qi Jiang et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2019)
Exploration of Genetic Variations through Single-cell Whole-genome Sequencing in the Model Ciliate Tetrahymena thermophila
Kai Chen et al.
JOURNAL OF EUKARYOTIC MICROBIOLOGY (2019)
Hidden genomic evolution in a morphospecies-The landscape of rapidly evolving genes in Tetrahymena
Jie Xiong et al.
PLOS BIOLOGY (2019)
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
Dongwan D. Kang et al.
PEERJ (2019)
Comparative Genomics Analysis of Ciliates Provides Insights on the Evolutionary History Within Nassophorea-Synhymenia-Phyllopharyngea Assemblage
Bo Pan et al.
FRONTIERS IN MICROBIOLOGY (2019)
fastp: an ultra-fast all-in-one FASTQ preprocessor
Shifu Chen et al.
BIOINFORMATICS (2018)
Distribution and Diversity of Microbial Eukaryotes in Bathypelagic Waters of the South China Sea
Dapeng Xu et al.
JOURNAL OF EUKARYOTIC MICROBIOLOGY (2017)
Phylogenomics solves a long-standing evolutionary puzzle in the ciliate world: The subclass Peritrichia is monophyletic
Eleni Gentekaki et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2017)
MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
Martin Steinegger et al.
NATURE BIOTECHNOLOGY (2017)
The Macronuclear Genome of Stentor coeruleus Reveals Tiny Introns in a Giant Cell
Mark M. Slabodnick et al.
CURRENT BIOLOGY (2017)
MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
Yu-Wei Wu et al.
BIOINFORMATICS (2016)
ProDeGe: a computational protocol for fully automated decontamination of genomes
Kristin Tennessen et al.
ISME JOURNAL (2016)
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
Nuala A. O'Leary et al.
NUCLEIC ACIDS RESEARCH (2016)
The All-Data-Based Evolutionary Hypothesis of Ciliated Protists with a Revised Classification of the Phylum Ciliophora (Eukaryota, Alveolata)
Feng Gao et al.
SCIENTIFIC REPORTS (2016)
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
Dinghua Li et al.
BIOINFORMATICS (2015)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
Phylogenomic analyses reveal subclass Scuticociliatia as the sister group of subclass Hymenostomatia within class Oligohymenophorea
Jin-Mei Feng et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2015)
Genome of the facultative scuticociliatosis pathogen Pseudocohnilembus persalinus provides insight into its virulence through horizontal gene transfer
Jie Xiong et al.
SCIENTIFIC REPORTS (2015)
Binning metagenomic contigs by coverage and composition
Johannes Alneberg et al.
NATURE METHODS (2014)
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
Brian J. Haas et al.
NATURE PROTOCOLS (2013)
Chromosome Copy Number Variation and Control in the Ciliate Chilodonella uncinata
Kevin J. Spring et al.
PLOS ONE (2013)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
NATURE PROTOCOLS (2012)
Unsupervised discovery of microbial population structure within metagenomes using nucleotide base composition
Isaam Saeed et al.
NUCLEIC ACIDS RESEARCH (2012)
The binning of rnetagenomic contings for physiology of mixed cultures
Marc Strous et al.
FRONTIERS IN MICROBIOLOGY (2012)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Using native and syntenically mapped cDNA alignments to improve de novo gene finding
Mario Stanke et al.
BIOINFORMATICS (2008)
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
Kim D. Pruitt et al.
NUCLEIC ACIDS RESEARCH (2007)
Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia
Jean-Marc Aury et al.
NATURE (2006)
Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote
Jonathan A. Eisen et al.
PLOS BIOLOGY (2006)
Engineering a software tool for gene structure prediction in higher organisms
G Gremme et al.
INFORMATION AND SOFTWARE TECHNOLOGY (2005)
NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
KD Pruitt et al.
NUCLEIC ACIDS RESEARCH (2005)
TigrScan and GlimmerHMM:: two open source ab initio eukaryotic gene-finders
WH Majoros et al.
BIOINFORMATICS (2004)
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
BJ Haas et al.
NUCLEIC ACIDS RESEARCH (2003)
分享论文
