相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Marsdenia tenacissima genome reveals calcium adaptation and tenacissoside biosynthesis
Yanli Zhou et al.
PLANT JOURNAL (2023)
Genome structure-based Juglandaceae phylogenies contradict alignment-based phylogenies and substitution rates vary with DNA repair genes
Ya-Mei Ding et al.
NATURE COMMUNICATIONS (2023)
BioNERO: an all-in-one R/Bioconductor package for comprehensive and easy biological network reconstruction
Fabricio Almeida-Silva et al.
FUNCTIONAL & INTEGRATIVE GENOMICS (2022)
A Population-Genetic Lens into the Process of Gene Loss Following Whole-Genome Duplication
Parul Johri et al.
MOLECULAR BIOLOGY AND EVOLUTION (2022)
Hybrid speciation via inheritance of alternate alleles of parental isolating genes
Zefu Wang et al.
MOLECULAR PLANT (2021)
How many genetic changes create new species?
Patrik Nosil et al.
SCIENCE (2021)
Cis-regulatory evolution spotlights species differences in the adaptive potential of gene expression plasticity
F. He et al.
NATURE COMMUNICATIONS (2021)
Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
John T. Lovell et al.
NATURE COMMUNICATIONS (2021)
A Combined Morphological and Molecular Evolutionary Analysis of Karst-Environment Adaptation for the Genus Urophysa (Ranunculaceae)
Deng-Feng Xie et al.
FRONTIERS IN PLANT SCIENCE (2021)
Convergent genomic signatures of high-altitude adaptation among domestic mammals
Dong-Dong Wu et al.
NATIONAL SCIENCE REVIEW (2020)
Convergent adaptation of the genomes of woody plants at the land-sea interface
Ziwen He et al.
NATIONAL SCIENCE REVIEW (2020)
The genome of a cave plant, Primulina huaijiensis, provides insights into adaptation to limestone karst habitats
Chao Feng et al.
NEW PHYTOLOGIST (2020)
TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data
Chengjie Chen et al.
MOLECULAR PLANT (2020)
Massive haplotypes underlie ecotypic differentiation in sunflowers
Marco Todesco et al.
NATURE (2020)
Genomic Convergence in the Adaptation to Extreme Environments
Shaohua Xu et al.
PLANT COMMUNICATIONS (2020)
Contrasting signatures of genomic divergence during sympatric speciation
Andreas F. Kautt et al.
NATURE (2020)
Sequencing a Juglans regia x J. microcarpa hybrid yields high-quality genome assemblies of parental species
Tingting Zhu et al.
HORTICULTURE RESEARCH (2019)
The genomes of pecan and Chinese hickory provide insights into Carya evolution and nut nutrition
Youjun Huang et al.
GIGASCIENCE (2019)
Convergent evolution in the genomics era: new insights and directions
Timothy B. Sackton et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2019)
Convergent evolution in Arabidopsis halleri and Arabidopsis arenosa on calamine metalliferous soils
Veronica Preite et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2019)
Plant ecology of tropical and subtropical karst ecosystems
Nalaka Geekiyanage et al.
BIOTROPICA (2019)
PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format files
Chi Zhang et al.
BIOINFORMATICS (2019)
Plant adaptation and speciation studied by population genomic approaches
Masaru Bamba et al.
DEVELOPMENT GROWTH & DIFFERENTIATION (2019)
Evolution of Portulacineae Marked by Gene Tree Conflict and Gene Family Expansion Associated with Adaptation to Harsh Environments
Ning Wang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2019)
OrthoFinder: phylogenetic orthology inference for comparative genomics
David M. Emms et al.
GENOME BIOLOGY (2019)
Convergent adaptive evolution in marginal environments: unloading transposable elements as a common strategy among mangrove genomes
Haomin Lyu et al.
NEW PHYTOLOGIST (2018)
Demographically idiosyncratic responses to climate change and rapid Pleistocene diversification of the walnut genus Juglans (Juglandaceae) revealed by whole-genome sequences
Wei-Ning Bai et al.
NEW PHYTOLOGIST (2018)
Post-polyploid diploidization and diversification through dysploid changes
Terezie Mandakova et al.
CURRENT OPINION IN PLANT BIOLOGY (2018)
Ca2+ imaging and gene expression profiling of Lonicera Confusa in response to calcium-rich environment
Wenwen Jin et al.
SCIENTIFIC REPORTS (2018)
Two Likely Auto-Tetraploidization Events Shaped Kiwifruit Genome and Contributed to Establishment of the Actinidiaceae Family
Jin-Peng Wang et al.
ISCIENCE (2018)
A novel hotspot of vertebrate endemism and an evolutionary refugium in tropical Australia
Paul M. Oliver et al.
DIVERSITY AND DISTRIBUTIONS (2017)
Salmon provides fast and bias-aware quantification of transcript expression
Rob Patro et al.
NATURE METHODS (2017)
Hierarchically Aligning 10 Legume Genomes Establishes a Family-Level Genomics Platform
Jinpeng Wang et al.
PLANT PHYSIOLOGY (2017)
Genetic divergence within the monotypic tree genus Platycarya (Juglandaceae) and its implications for species' past dynamics in subtropical China
Qiuchi Wan et al.
TREE GENETICS & GENOMES (2017)
Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory
Kenji Fukushima et al.
NATURE ECOLOGY & EVOLUTION (2017)
Adaptive molecular evolution of the two-pore channel 1 gene TPC1 in the karst-adapted genus Primulina (Gesneriaceae)
Junjie Tao et al.
ANNALS OF BOTANY (2016)
Variation in Linked Selection and Recombination Drive Genomic Divergence during Allopatric Speciation of European and American Aspens
Jing Wang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
PSMC analysis of effective population sizes in molecular ecology and its application to black-and-white Ficedula flycatchers
Krystyna Nadachowska-Brzyska et al.
MOLECULAR ECOLOGY (2016)
Convergent local adaptation to climate in distantly related conifers
Sam Yeaman et al.
SCIENCE (2016)
A Relay Race on the Evolutionary Adaptation Spectrum
Avihu H. Yona et al.
CELL (2015)
Properties of different selection signature statistics and a new strategy for combining them
Y. Ma et al.
HEREDITY (2015)
Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake
Milan Malinsky et al.
SCIENCE (2015)
Second-generation PLINK: rising to the challenge of larger and richer datasets
Christopher C. Chang et al.
GIGASCIENCE (2015)
Untangling the influence of phylogeny, soil and climate on leaf element concentrations in a biodiversity hotspot
Zhuan Hao et al.
FUNCTIONAL ECOLOGY (2015)
Inflorescence dimorphism, heterodichogamy and thrips pollination in Platycarya strobilacea (Juglandaceae)
Tatsundo Fukuhara et al.
ANNALS OF BOTANY (2014)
Quartet Inference from SNP Data Under the Coalescent Model
Julia Chifman et al.
BIOINFORMATICS (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Whole-genome sequencing of six dog breeds from continuous altitudes reveals adaptation to high-altitude hypoxia
Xiao Gou et al.
GENOME RESEARCH (2014)
Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow
Tami E. Cruickshank et al.
MOLECULAR ECOLOGY (2014)
On the cellular site of two-pore channel TPC1 action in the Poaceae
Beata Dadacz-Narloch et al.
NEW PHYTOLOGIST (2013)
Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3
Mira V. Han et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Genome-wide signatures of convergent evolution in echolocating mammals
Joe Parker et al.
NATURE (2013)
Copy-number changes in evolution: rates, fitness effects and adaptive significance
Vaishali Katju et al.
Frontiers in Genetics (2013)
A high-performance computing toolset for relatedness and principal component analysis of SNP data
Xiuwen Zheng et al.
BIOINFORMATICS (2012)
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
Yupeng Wang et al.
NUCLEIC ACIDS RESEARCH (2012)
The genomics of speciation-with-gene-flow
Jeffrey L. Feder et al.
TRENDS IN GENETICS (2012)
Geographic variation of chloroplast DNA in Platycarya strobilacea (Juglandaceae)
Shi-Chao Chen et al.
JOURNAL OF SYSTEMATICS AND EVOLUTION (2012)
A genome triplication associated with early diversification of the core eudicots
Yuannian Jiao et al.
GENOME BIOLOGY (2012)
The variant call format and VCFtools
Petr Danecek et al.
BIOINFORMATICS (2011)
BUDVARICARPUS SERIALIS KNOBLOCH & MAI, AN UNUSUAL NEW MEMBER OF THE NORMAPOLLES COMPLEX FROM THE LATE CRETACEOUS OF THE CZECH REPUBLIC
Zuzana Hermanova et al.
INTERNATIONAL JOURNAL OF PLANT SCIENCES (2011)
TPC1-SV Channels Gain Shape
Rainer Hedrich et al.
MOLECULAR PLANT (2011)
Inference of human population history from individual whole-genome sequences
Heng Li et al.
NATURE (2011)
Seasonal water use patterns of woody species growing on the continuous dolostone outcrops and nearby thin soils in subtropical China
Yun-peng Nie et al.
PLANT AND SOIL (2011)
Robust relationship inference in genome-wide association studies
Ani Manichaikul et al.
BIOINFORMATICS (2010)
Convergent sequence evolution between echolocating bats and dolphins
Yang Liu et al.
CURRENT BIOLOGY (2010)
The hearing gene Prestin unites echolocating bats and whales
Ying Li et al.
CURRENT BIOLOGY (2010)
Spatial patterns and interspecific associations of dominant tree species in two old-growth karst forests, SW China
Zhong-Hua Zhang et al.
ECOLOGICAL RESEARCH (2010)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
The Mediator Complex Subunit PFT1 Is a Key Regulator of Jasmonate-Dependent Defense in Arabidopsis
Brendan N. Kidd et al.
PLANT CELL (2009)
Genetics and ecological speciation
Dolph Schluter et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Perspective - Synteny and collinearity in plant genomes
Haibao Tang et al.
SCIENCE (2008)
Automated eukaryotic gene structure annotation using EVidenceModeler and the program to assemble spliced alignments
Brian J. Haas et al.
GENOME BIOLOGY (2008)
Genome-wide detection and characterization of positive selection in human populations
Pardis C. Sabeti et al.
NATURE (2007)
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
Olivier Jaillon et al.
NATURE (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Recombination rate estimation in the presence of hotspots
Adam Auton et al.
GENOME RESEARCH (2007)
Phenotypic plasticity and the epigenetics of human disease
Andrew P. Feinberg
NATURE (2007)
Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds
Jose Antonio Aguilar-Martinez et al.
PLANT CELL (2007)
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
G. A. Tuskan et al.
SCIENCE (2006)
Evolution in closely adjacent plant populations X: long-term persistence of prereproductive isolation at a mine boundary
J. Antonovics
HEREDITY (2006)
CAFE: a computational tool for the study of gene family evolution
T De Bie et al.
BIOINFORMATICS (2006)
Genomic scans for selective sweeps using SNP data
R Nielsen et al.
GENOME RESEARCH (2005)
Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study
G Evanno et al.
MOLECULAR ECOLOGY (2005)
The fine-scale structure of recombination rate variation in the human genome
GAT McVean et al.
SCIENCE (2004)
Analysis of transposon insertion mutants highlights the diversity of mechanisms underlying male progamic development in arabidopsis
E Lalanne et al.
GENETICS (2004)
A comparison of Bayesian methods for haplotype reconstruction from population genotype data
M Stephens et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2003)
A draft sequence of the rice genome (Oryza sativa L. ssp japonica)
SA Goff et al.
SCIENCE (2002)
Electrophysiological analysis of cloned cyclic nucleotide-gated ion channels
Q Leng et al.
PLANT PHYSIOLOGY (2002)
Generating samples under a Wright-Fisher neutral model of genetic variation
RR Hudson
BIOINFORMATICS (2002)
Evolution, phylogeny, and systematics of the Juglandaceae
PS Manos et al.
ANNALS OF THE MISSOURI BOTANICAL GARDEN (2001)
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
S Kaul et al.
NATURE (2000)
分享论文
