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Caleb J. Frye et al.
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Ramya Rangan et al.
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Philip V'kovski et al.
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Kuldeep Dhama et al.
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James Brett Case et al.
CELL HOST & MICROBE (2020)
A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology
Andrew Rambaut et al.
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Ting-Yu Yeh et al.
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Junxing Zhao et al.
VIRUSES-BASEL (2020)
Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements
Ilaria Manfredonia et al.
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Secondary structure determination of conserved SARS-CoV-2 RNA elements by NMR spectroscopy
Anna Wacker et al.
NUCLEIC ACIDS RESEARCH (2020)
Accurate detection of chemical modifications in RNA by mutational profiling (MaP) with ShapeMapper 2
Steven Busan et al.
RNA (2018)
Minimap2: pairwise alignment for nucleotide sequences
Heng Li
BIOINFORMATICS (2018)
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
Sudhir Kumar et al.
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Selective 2′-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile and accurate RNA structure analysis
Matthew J. Smola et al.
NATURE PROTOCOLS (2015)
The structure and functions of coronavirus genomic 3′ and 5′ ends
Dong Yang et al.
VIRUS RESEARCH (2015)
RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP)
Nathan A. Siegfried et al.
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Accurate SHAPE-directed RNA secondary structure modeling, including pseudoknots
Christine E. Hajdin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
A mobile genetic element with unknown function found in distantly related viruses
Torstein Tengs et al.
VIROLOGY JOURNAL (2013)
LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets
Andreas Wilm et al.
NUCLEIC ACIDS RESEARCH (2012)
Screening of Feral and Wood Pigeons for Viruses Harbouring a Conserved Mobile Viral Element: Characterization of Novel Astroviruses and Picornaviruses
Tone Kofstad et al.
PLOS ONE (2011)
Jalview Version 2-a multiple sequence alignment editor and analysis workbench
Andrew M. Waterhouse et al.
BIOINFORMATICS (2009)
A hypervariable region within the 3′ cis-acting element of the murine coronavirus genome is nonessential for RNA synthesis but affects pathogenesis
Scott J. Goebel et al.
JOURNAL OF VIROLOGY (2007)
The structure of a rigorously conserved RNA element within the SARS virus genome
MP Robertson et al.
PLOS BIOLOGY (2005)
Characterization of the RNA components of a putative molecular switch in the 3 ' untranslated region of the murine coronavirus genome
SJ Goebel et al.
JOURNAL OF VIROLOGY (2004)