4.7 Article

Lipid Peroxidation Products Influence Calpain-1 Functionality In Vitro by Covalent Binding

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models

Mihaly Varadi et al.

Summary: AlphaFold DB is an openly accessible database with high-accuracy protein-structure predictions, powered by DeepMind's AlphaFold v2.0. It provides programmatic access to a vast number of predicted structures and is expanding to cover more sequences.

NUCLEIC ACIDS RESEARCH (2022)

Article Chemistry, Applied

Sarcoplasmic and myofibril-bound calpains during storage of pork longissimus muscle: New insights on protein degradation

Jian Lyu et al.

Summary: The study investigated the subcellular distribution of calpain-1 and -2 as well as the proteolytic activity of myofibril-bound calpains during 12 days cold storage in pork. The results showed that calpain-1 gradually translocated from sarcoplasm to myofibrils during the initial 6 days of postmortem storage, and both calpain-1 and calpain-2 were found to bind to myofibrils and subsequently degrade structural proteins, including desmin.

FOOD CHEMISTRY (2022)

Article Biochemical Research Methods

ColabFold: making protein folding accessible to all

Milot Mirdita et al.

Summary: ColabFold combines fast homology search and optimized model utilization to offer accelerated prediction of protein structures and complexes, with a processing speed that is 40-60 times faster. It serves as a free and accessible platform for protein folding, capable of predicting close to 1,000 structures per day.

NATURE METHODS (2022)

Article Food Science & Technology

Ca2+-induced binding of calpain-2 to myofibrils: Preliminary results in pork longissimus thoracis muscle supporting a role on myofibrillar protein degradation

Jian Lyu et al.

Summary: The study revealed that an increase in Ca2+ concentration can activate calpain and induce its binding to myofibrils, thereby making it proteolytically active.

MEAT SCIENCE (2021)

Article Chemistry, Applied

μ-Calpain oxidation and proteolytic changes on myofibrillar proteins from Coregonus Peled in vitro

Pingping Liu et al.

Summary: The study revealed that hydroxyl radical oxidation significantly altered the structural properties of mu-calpain, affecting its activity and degradation of myofibrillar protein. The highest mu-calpain activity facilitated the degradation of unoxidized myofibrillar protein, while the degradation of oxidized myofibrillar protein was influenced by the concentration of oxidant.

FOOD CHEMISTRY (2021)

Article Multidisciplinary Sciences

Highly accurate protein structure prediction with AlphaFold

John Jumper et al.

Summary: Proteins are essential for life, and accurate prediction of their structures is a crucial research problem. Current experimental methods are time-consuming, highlighting the need for accurate computational approaches to address the gap in structural coverage. Despite recent progress, existing methods fall short of atomic accuracy in protein structure prediction.

NATURE (2021)

Article Biochemistry & Molecular Biology

Dynamic posttranslational modifications of cytoskeletal proteins unveil hot spots under nitroxidative stress

Eva Griesser et al.

Summary: The cytoskeleton is a supramolecular structure made up of interacting protein networks that play crucial roles in cell dynamics, including migration, division, and stress responses. Redox-related posttranslational modifications (PTMs) are emerging as key players in cytoskeletal regulation, as shown by a study on mild nitroxidative stress inducing changes in cytoskeletal protein organization and PTM profiles. High-resolution mass spectrometry identified 62 different PTMs in vimentin, actin, and tubulin, revealing a chain reaction with formation of numerous reactive species and activation of multiple signaling pathways.

REDOX BIOLOGY (2021)

Review Biochemistry & Molecular Biology

Modification of proteins by reactive lipid oxidation products and biochemical effects of lipoxidation

Corinne M. Spickett et al.

PROTEIN OXIDATION (2020)

Article Multidisciplinary Sciences

Inferring the molecular and phenotypic impact of amino acid variants with MutPred2

Vikas Pejaver et al.

NATURE COMMUNICATIONS (2020)

Review Biochemistry & Molecular Biology

The Advanced Lipoxidation End-Product Malondialdehyde-Lysine in Aging and Longevity

Mariona Jove et al.

ANTIOXIDANTS (2020)

Review Biochemistry & Molecular Biology

Secondary Forces in Protein Folding

Robert W. Newberry et al.

ACS CHEMICAL BIOLOGY (2019)

Article Cell Biology

Molecular Mechanism of Cellular Oxidative Stress Sensing by Keap1

Takafumi Suzuki et al.

CELL REPORTS (2019)

Article Agriculture, Multidisciplinary

Carbon Chain Length of Lipid Oxidation Products Influence Lactate Dehydrogenase and NADH-Dependent Metmyoglobin Reductase Activity

Chaoyu Zhai et al.

JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY (2019)

Review Biochemistry & Molecular Biology

4-Hydroxynonenal (HNE) modified proteins in metabolic diseases

Jose Pedro Castro et al.

FREE RADICAL BIOLOGY AND MEDICINE (2017)

Article Agriculture, Multidisciplinary

Influence of modified atmosphere packaging on protein oxidation, calpain activation and desmin degradation of beef muscles

Qing-quan Fu et al.

JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE (2017)

Article Food Science & Technology

Development of spoilage bacterial community and volatile compounds in chilled beef under vacuum or high oxygen atmospheres

Elina Jaaskelainen et al.

INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2016)

Article Food Science & Technology

Effects of High Oxygen Packaging on Tenderness and Water Holding Capacity of Pork Through Protein Oxidation

Lin Chen et al.

FOOD AND BIOPROCESS TECHNOLOGY (2015)

Article Food Science & Technology

The dynamics of the HS/SPME-GC/MS as a tool to assess the spoilage of minced beef stored under different packaging and temperature conditions

Anthoula A. Argyri et al.

INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2015)

Article Food Science & Technology

Species-specific effects on non-enzymatic metmyoglobin reduction in vitro

N. N. Elroy et al.

MEAT SCIENCE (2015)

Review Biochemistry & Molecular Biology

Forces stabilizing proteins

C. Nick Pace et al.

FEBS LETTERS (2014)

Article Agriculture, Multidisciplinary

Covalent Binding of 4-Hydroxy-2-nonenal to Lactate Dehydrogenase Decreases NADH Formation and Metmyoglobin Reducing Activity

Ranjith Ramanathan et al.

JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY (2014)

Article Agriculture, Multidisciplinary

Effect of Nitric Oxide on μ-Calpain Activation, Protein Proteolysis, and Protein Oxidation of Pork during Post-Mortem Aging

Yu-pin Li et al.

JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY (2014)

Article Agriculture, Multidisciplinary

Mass Spectrometric Evidence of Malonaldehyde and 4-Hydroxynonenal Adductions to Radical-Scavenging Soy Peptides

Jing Zhao et al.

JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY (2012)

Review Multidisciplinary Sciences

The Protein-Folding Problem, 50 Years On

Ken A. Dill et al.

SCIENCE (2012)

Article Biochemistry & Molecular Biology

Modification of Akt2 by 4-Hydroxynonenal Inhibits Insulin-Dependent Akt Signaling in HepG2 Cells

C. T. Shearn et al.

BIOCHEMISTRY (2011)

Article Food Science & Technology

Detection of Lipid-Derived Aldehydes and Aldehyde:Protein Adducts In Vitro and in Beef

M.P. Lynch et al.

JOURNAL OF FOOD SCIENCE (2010)

Article Biochemistry & Molecular Biology

The malondialdehyde-derived fluorophore DHP-lysine is a potent sensitizer of UVA-induced photooxidative stress in human skin cells

Sarah D. Lamore et al.

JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY (2010)

Review Food Science & Technology

Consumer perception and the role of science in the meat industry

D. J. Troy et al.

MEAT SCIENCE (2010)

Review Food Science & Technology

Myoglobin and lipid oxidation interactions: Mechanistic bases and control

Cameron Faustman et al.

MEAT SCIENCE (2010)

Article Biochemistry & Molecular Biology

Site-specific modification of positively-charged surfaces on human serum albumin by malondialdehyde

Takeshi Ishii et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2008)

Article Biochemistry & Molecular Biology

Disulfide bond within μ-calpain active site inhibits activity and autolysis

Rene Lametsch et al.

BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2008)

Article Biochemical Research Methods

Improving sensitivity by probabilistically combining results from multiple MS/MS search methodologies

Brian C. Searle et al.

JOURNAL OF PROTEOME RESEARCH (2008)

Editorial Material Biochemical Research Methods

Assigning significance to peptides identified by tandem mass spectrometry using decoy databases

Lukas Kaell et al.

JOURNAL OF PROTEOME RESEARCH (2008)

Article Biochemical Research Methods

Proteomics of lipid oxidation-induced oxidation of porcine and bovine oxymyoglobins

Surendranath P. Suman et al.

PROTEOMICS (2007)

Article Agriculture, Dairy & Animal Science

μ-Calpain is essential for postmortem proteolysis of muscle proteins

G. H. Geesink et al.

JOURNAL OF ANIMAL SCIENCE (2006)

Review Biochemistry & Molecular Biology

The structural basis of calpain behavior

Yves Benyamin

FEBS JOURNAL (2006)

Article Agriculture, Dairy & Animal Science

Effect of oxidation, pH, and ionic strength on calpastatin inhibition of μ- and m-calpain

KRM Carlin et al.

JOURNAL OF ANIMAL SCIENCE (2006)

Article Chemistry, Medicinal

Mass spectroscopic characterization of protein modification by malondialdehyde

T Ishii et al.

CHEMICAL RESEARCH IN TOXICOLOGY (2006)

Article Pharmacology & Pharmacy

Modification of heat shock protein 90 by 4-hydroxynonenal in a rat model of chronic alcoholic liver disease

DL Carbone et al.

JOURNAL OF PHARMACOLOGY AND EXPERIMENTAL THERAPEUTICS (2005)

Article Cardiac & Cardiovascular Systems

A review of recent studies on malondialdehyde as toxic molecule and biological marker of oxidative stress

D Del Rio et al.

NUTRITION METABOLISM AND CARDIOVASCULAR DISEASES (2005)

Article Biochemistry & Molecular Biology

Effect of phosphatidylinositol and inside-out erythrocyte vesicles on autolysis of μ- and m-calpain from bovine skeletal muscle

T Zalewska et al.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2004)

Article Biochemical Research Methods

Modification of Cytochrome c by 4-hydroxy-2-nonenal:: Evidence for histidine, lysine, and arginine-aldehyde adducts

AL Isom et al.

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2004)

Article Chemistry, Medicinal

Inhibition of Hsp72-mediated protein refolding by 4-hydroxy-2-nonenal

DL Carbone et al.

CHEMICAL RESEARCH IN TOXICOLOGY (2004)

Article Chemistry, Analytical

A statistical model for identifying proteins by tandem mass spectrometry

AI Nesvizhskii et al.

ANALYTICAL CHEMISTRY (2003)

Review Physiology

The calpain system

DE Goll et al.

PHYSIOLOGICAL REVIEWS (2003)

Article Biochemistry & Molecular Biology

IκB kinase, a molecular target for inhibition by 4-hydroxy-2-nonenal

C Ji et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2001)

Article Agriculture, Multidisciplinary

Effect of aldehyde lipid oxidation products on myoglobin

MP Lynch et al.

JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY (2000)