4.7 Article

FZD7???????, Regulated by Non-CpG Methylation, Plays an Important Role in Immature Porcine Sertoli Cell Proliferation

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022

Yongbiao Xue et al.

Summary: The National Genomics Data Center (NGDC) of China National Center for Bioinformation (CNCB) provides database resources to support global research, with a focus on single-cell omics and precision medicine. They continuously scale up and update core database resources, daily update SARS-CoV-2 genome data, and establish OpenLB and update Database Commons.

NUCLEIC ACIDS RESEARCH (2022)

Review Biochemistry & Molecular Biology

Immune and vascular contributions to organogenesis of the testis and ovary

Xiaowei Gu et al.

Summary: Gonad development is a tightly regulated process that involves cell differentiation and morphogenesis to produce sex-specific organ structures necessary for fertility. Immune and vascular cells play crucial roles in sexual differentiation and organogenesis of the gonad, opening up a new avenue for research in this field.

FEBS JOURNAL (2022)

Article Cell Biology

UHRF1 establishes crosstalk between somatic and germ cells in male reproduction

Yanqing Wu et al.

Summary: This study reveals the importance of UHRF1 in the epigenetic regulation of Sertoli cells during spermatogenesis. UHRF1 regulates the expression of extracellular matrix-related genes and establishes the crosstalk between Sertoli cells and germ cells.

CELL DEATH & DISEASE (2022)

Review Endocrinology & Metabolism

Testicular Sertoli Cell Hormones in Differences in Sex Development

Angela K. Lucas-Herald et al.

Summary: Sertoli cells play an important role in gonadal development, germ cell survival, and spermatogenesis. The levels of AMH and inhibin B in individuals with DSD are regulated and can impact their gonadal function throughout life.

FRONTIERS IN ENDOCRINOLOGY (2022)

Article Biology

Anchor-based bisulfite sequencing determines genome-wide DNA methylation

Nathaniel Chapin et al.

Summary: Anchor-Based Bisulfite Sequencing (ABBS) is a new method for DNA methylation profiling, which requires only one-tenth of the sequencing reads compared to Whole Genome Bisulfite Sequencing (WGBS) while still being able to interrogate the entire genome.

COMMUNICATIONS BIOLOGY (2022)

Article Biotechnology & Applied Microbiology

Regulation of DNA methylation during the testicular development of Shaziling pigs

Yang Anqi et al.

Summary: This study generated a DNA methylome and transcriptome atlas of precocious porcine testicular tissues, providing insights into the dynamic regulatory mechanisms of DNA methylation during testicular development. The results showed a direct relationship between dynamic methylation patterns and the expression of the DNMT3A gene. Promoter methylation was found to negatively regulate 3' UTR methylation. Additionally, decreased promoter methylation affected the upregulation of meiosis-related genes, while demethylation in the 3' UTR led to the downregulation of the INHBA gene. These findings contribute to a better understanding of the regulatory mechanisms of DNA methylation in testicular development.

GENOMICS (2022)

Article Biochemistry & Molecular Biology

The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets

Damian Szklarczyk et al.

Summary: The STRING database integrates various associations between proteins, including physical interactions and functional associations, by collecting evidence from sources such as literature, databases, computational predictions, and systematic transfers. STRING aims for wide coverage and provides extensive user interface features and querying methods for experimental data.

NUCLEIC ACIDS RESEARCH (2021)

Article Ecology

The emergence of the brain non-CpG methylation system in vertebrates

Alex de Mendoza et al.

Summary: The study reveals that non-CpG DNA methylation is restricted to vertebrates, particularly enriched within a highly conserved set of developmental genes in mammalian brains, indicating a deeply conserved regulatory program. These findings suggest that the emergence of non-CpG methylation may have fostered the evolution of sophisticated cognitive abilities found in the vertebrate lineage.

NATURE ECOLOGY & EVOLUTION (2021)

Article Cell Biology

Unraveling Stage-Dependent Expression Patterns of Circular RNAs and Their Related ceRNA Modulation in Ovine Postnatal Testis Development

Taotao Li et al.

Summary: The study revealed the temporal expression patterns of circRNAs in testes of Tibetan sheep at different maturation stages, constructed a core circRNA-miRNA-mRNA interaction network related to testicular function, and validated the interactions between circRNAs, miRNAs, and mRNAs. These findings provide new insights into the diverse functions of circRNAs in cell development and maturation.

FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY (2021)

Article Genetics & Heredity

The Genome Sequence Archive Family: Toward Explosive Data Growth and Diverse Data Types

Tingting Chen et al.

Summary: The Genome Sequence Archive (GSA) and its family of resources aim to provide data storage and sharing services for worldwide scientific communities, including GSA, GSA-Human, and OMIX. GSA has updated data model and online functionalities, GSA-Human stores human genetics-related data, and OMIX provides open archive for miscellaneous data. These resources together form a family, accepting global data submissions and providing free open access for worldwide research activities.

GENOMICS PROTEOMICS & BIOINFORMATICS (2021)

Review Genetics & Heredity

DNA Methylation Reprogramming during Mammalian Development

Yang Zeng et al.

Review Cell Biology

The diverse roles of DNA methylation in mammalian development and disease

Maxim V. C. Greenberg et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2019)

Review Genetics & Heredity

Genetics meets DNA methylation in rare diseases

Guillaume Velasco et al.

CLINICAL GENETICS (2019)

Article Biochemistry & Molecular Biology

Active Demethylation of Non-CpG Moieties in Animals: A Neglected Research Area

Marco Lucarelli et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)

Article Biochemistry & Molecular Biology

The UCSC Genome Browser database: 2019 update

Maximilian Haeussler et al.

NUCLEIC ACIDS RESEARCH (2019)

Review Reproductive Biology

50 years of spermatogenesis: Sertoli cells and their interactions with germ cells

Michael D. Griswold

BIOLOGY OF REPRODUCTION (2018)

Review Multidisciplinary Sciences

Dynamic DNA methylation: In the right place at the right time

Chongyuan Luo et al.

SCIENCE (2018)

Review Oncology

The calcium-cancer signalling nexus

Gregory R. Monteith et al.

NATURE REVIEWS CANCER (2017)

Article Biochemical Research Methods

Differential methylation analysis for BS-seq data under general experimental design

Yongseok Park et al.

BIOINFORMATICS (2016)

Review Genetics & Heredity

Wnt signaling in testis development: Unnecessary or essential?

Wei-Lai Dong et al.

Article Mathematical & Computational Biology

cytoHubba: identifying hub objects and sub-networks from complex interactome

Chia-Hao Chin et al.

BMC SYSTEMS BIOLOGY (2014)

Review Biochemistry & Molecular Biology

The evidence for functional non-CpG methylation in mammalian cells

Vibha Patil et al.

EPIGENETICS (2014)

Review Neurosciences

DNA Methylation and Its Basic Function

Lisa D. Moore et al.

NEUROPSYCHOPHARMACOLOGY (2013)

Article Biochemistry & Molecular Biology

Accumulation and loss of asymmetric non-CpG methylation during male germ-cell development

Tomoko Ichiyanagi et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

Caspase 3-mediated stimulation of tumor cell repopulation during cancer radiotherapy

Qian Huang et al.

NATURE MEDICINE (2011)

Article Biochemistry & Molecular Biology

FZD7 has a critical role in cell proliferation in triple negative breast cancer

L. Yang et al.

ONCOGENE (2011)

Article Cell Biology

Apoptosis and Autophagy: Decoding Calcium Signals that Mediate Life or Death

Michael W. Harr et al.

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2010)

Review Biochemistry & Molecular Biology

The human and mouse sex-determining SRY genes repress the Rspo1/β-catenin signaling

Yun-Fai Chris Lau et al.

JOURNAL OF GENETICS AND GENOMICS (2009)

Article Multidisciplinary Sciences

Human DNA methylomes at base resolution show widespread epigenomic differences

Ryan Lister et al.

NATURE (2009)

Article Biochemistry & Molecular Biology

Caspase-3-dependent activation of calcium-independent phospholipase A2 enhances cell migration in non-apoptotic ovarian cancer cells

Xiaoxian Zhao et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2006)

Article Biochemistry & Molecular Biology

Cytoscape: A software environment for integrated models of biomolecular interaction networks

P Shannon et al.

GENOME RESEARCH (2003)

Article Multidisciplinary Sciences

C(m)C(A/T)GG DNA methylation in mature B cell lymphoma gene silencing

CS Malone et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)

Article Biochemistry & Molecular Biology

Early stages of p53-induced apoptosis are reversible

FJ Geske et al.

CELL DEATH AND DIFFERENTIATION (2001)

Article Multidisciplinary Sciences

Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a

BH Ramsahoye et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)