4.7 Article

The VEGA Tool to Check the Applicability Domain Gives Greater Confidence in the Prediction of In Silico Models

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MDPI
DOI: 10.3390/ijms24129894

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in silico models; new approach methodologies (NAMs); toxicological endpoints; applicability domain (AD); VEGA tool

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A thorough assessment of in silico models and their applicability domain is crucial for utilizing new approach methodologies (NAMs) in chemical risk assessment and building users' confidence. The VEGA tool is examined in this study to evaluate the applicability domain of in silico models, demonstrating its efficiency in identifying less accurate predictions for various toxicological endpoints. The tool evaluates chemical structures and related features, providing valuable insights for both regression models and classifiers.
A sound assessment of in silico models and their applicability domain can support the use of new approach methodologies (NAMs) in chemical risk assessment and requires increasing the users' confidence in this approach. Several approaches have been proposed to evaluate the applicability domain of such models, but their prediction power still needs a thorough assessment. In this context, the VEGA tool capable of assessing the applicability domain of in silico models is examined for a range of toxicological endpoints. The VEGA tool evaluates chemical structures and other features related to the predicted endpoints and is efficient in measuring applicability domain, enabling the user to identify less accurate predictions. This is demonstrated with many models addressing different endpoints, towards toxicity of relevance to human health, ecotoxicological endpoints, environmental fate, physicochemical and toxicokinetic properties, for both regression models and classifiers.

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