相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Bacterial species metabolic interaction network for deciphering the lignocellulolytic system in fungal cultivating termite gut microbiota
Pritam Kundu et al.
BIOSYSTEMS (2022)
Metabolic modeling of the International Space Station microbiome reveals key microbial interactions
Rachita K. Kumar et al.
MICROBIOME (2022)
Recent advances in constraint and machine learning-based metabolic modeling by leveraging stoichiometric balances, thermodynamic feasibility and kinetic law formalisms
Patrick F. Suthers et al.
METABOLIC ENGINEERING (2021)
Polarization of microbial communities between competitive and cooperative metabolism
Daniel Machado et al.
NATURE ECOLOGY & EVOLUTION (2021)
Genome Scale-Differential Flux Analysis reveals deregulation of lung cell metabolism on SARS-CoV-2 infection
Piyush Nanda et al.
PLOS COMPUTATIONAL BIOLOGY (2021)
Metabolic modelling reveals broad changes in gut microbial metabolism in inflammatory bowel disease patients with dysbiosis
Almut Heinken et al.
NPJ SYSTEMS BIOLOGY AND APPLICATIONS (2021)
Designing microbial communities to maximize the thermodynamic driving force for the production of chemicals
Pavlos Stephanos Bekiaris et al.
PLOS COMPUTATIONAL BIOLOGY (2021)
Metabolic modelling approaches for describing and engineering microbial communities
Beatriz Garcia-Jimenez et al.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2021)
Computational Modeling of the Human Microbiome
Shomeek Chowdhury et al.
MICROORGANISMS (2020)
Dynamic metabolic adaptation can promote species coexistence in competitive microbial communities
Leonardo Pacciani-Mori et al.
PLoS Computational Biology (2020)
Investigating metabolic interactions in a microbial co-culture through integrated modelling and experiments
Aarthi Ravikrishnan et al.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2020)
Systems Biology Approaches to Understand the Host-Microbiome Interactions in Neurodegenerative Diseases
Dorines Rosario et al.
FRONTIERS IN NEUROSCIENCE (2020)
Fungus-growing insects host a distinctive microbiota apparently adapted to the fungiculture environment
Mariana O. Barcoto et al.
SCIENTIFIC REPORTS (2020)
RedCom: A strategy for reduced metabolic modeling of complex microbial communities and its application for analyzing experimental datasets from anaerobic digestion
Sabine Koch et al.
PLOS COMPUTATIONAL BIOLOGY (2019)
Designing Metabolic Division of Labor in Microbial Communities
Meghan Thommes et al.
MSYSTEMS (2019)
Disease-free monoculture farming by fungus-growing termites
Saria Otani et al.
SCIENTIFIC REPORTS (2019)
Metabolic network percolation quantifies biosynthetic capabilities across the human oral microbiome
David B. Bernstein et al.
ELIFE (2019)
Predicting the Longitudinally and Radially Varying Gut Microbiota Composition using Multi-Scale Microbial Metabolic Modeling
Siu H. J. Chan et al.
PROCESSES (2019)
Species-wide Metabolic Interaction Network for Understanding Natural Lignocellulose Digestion in Termite Gut Microbiota
Pritam Kundu et al.
SCIENTIFIC REPORTS (2019)
Metabolic Modeling Elucidates the Transactions in the Rumen Microbiome and the Shifts Upon Virome Interactions
Mohammad Mazharul Islam et al.
FRONTIERS IN MICROBIOLOGY (2019)
Systems biology perspective for studying the gut microbiota in human physiology and liver diseases
Ozlem Altay et al.
EBIOMEDICINE (2019)
A systematic assessment of current genome-scale metabolic reconstruction tools
Sebastian N. Mendoza et al.
GENOME BIOLOGY (2019)
KBase: The United States Department of Energy Systems Biology Knowledgebase
Adam P. Arkin et al.
NATURE BIOTECHNOLOGY (2018)
Methods for automated genome-scale metabolic model reconstruction
Jose P. Faria et al.
BIOCHEMICAL SOCIETY TRANSACTIONS (2018)
Gut microbiota dysbiosis is associated with malnutrition and reduced plasma amino acid levels: Lessons from genome-scale metabolic modeling
Manish Kumar et al.
METABOLIC ENGINEERING (2018)
Human gut microbe co-cultures have greater potential than monocultures for food waste remediation to commodity chemicals
Matthew A. Perisin et al.
SCIENTIFIC REPORTS (2018)
KEGG: new perspectives on genomes, pathways, diseases and drugs
Minoru Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2017)
Bacterial communities in termite fungus combs are comprised of consistent gut deposits and contributions from the environment
Saria Otani et al.
MICROBIAL ECOLOGY (2016)
Metabolic Network Modeling of Microbial Interactions in Natural and Engineered Environmental Systems
Octavio Perez-Garcia et al.
FRONTIERS IN MICROBIOLOGY (2016)
The Gut Microbiota of Termites: Digesting the Diversity in the Light of Ecology and Evolution
Andreas Brune et al.
ANNUAL REVIEW OF MICROBIOLOGY, VOL 69 (2015)
Towards an integrated understanding of the consequences of fungus domestication on the fungus-growing termite gut microbiota
Michael Poulsen
ENVIRONMENTAL MICROBIOLOGY (2015)
Diet is the primary determinant of bacterial community structure in the guts of higher termites
Aram Mikaelyan et al.
MOLECULAR ECOLOGY (2015)
Reconstructing genome-scale metabolic models with merlin
Oscar Dias et al.
NUCLEIC ACIDS RESEARCH (2015)
Metabolic dependencies drive species co-occurrence in diverse microbial communities
Aleksej Zelezniak et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Metagenomic analysis of the microbiota in the highly compartmented hindguts of six wood- or soil-feeding higher termites
Karen Rossmassler et al.
MICROBIOME (2015)
Digestive enzymes from workers and soldiers of termite Nasutitermes corniger
Thamarah de Albuquerque Lima et al.
COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY (2014)
Identifying the core microbial community in the gut of fungus-growing termites
Saria Otani et al.
MOLECULAR ECOLOGY (2014)
Syntrophic exchange in synthetic microbial communities
Michael T. Mee et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Complementary symbiont contributions to plant decomposition in a fungus-farming termite
Michael Poulsen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
COBRApy: COnstraints-Based Reconstruction and Analysis for Python
Ali Ebrahim et al.
BMC SYSTEMS BIOLOGY (2013)
The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum
Rasmus Agren et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
Calculating and reporting effect sizes to facilitate cumulative science: a practical primer for t-tests and ANOVAs
Daniel Lakens
FRONTIERS IN PSYCHOLOGY (2013)
The gut microbiota of insects - diversity in structure and function
Philipp Engel et al.
FEMS MICROBIOLOGY REVIEWS (2013)
Microbial interactions: from networks to models
Karoline Faust et al.
NATURE REVIEWS MICROBIOLOGY (2012)
OptCom: A Multi-Level Optimization Framework for the Metabolic Modeling and Analysis of Microbial Communities
Ali R. Zomorrodi et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions
Jan Schellenberger et al.
BMC BIOINFORMATICS (2010)
Computationally efficient flux variability analysis
Steinn Gudmundsson et al.
BMC BIOINFORMATICS (2010)
High-throughput generation, optimization and analysis of genome-scale metabolic models
Christopher S. Henry et al.
NATURE BIOTECHNOLOGY (2010)
What is flux balance analysis?
Jeffrey D. Orth et al.
NATURE BIOTECHNOLOGY (2010)
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
Falk Warnecke et al.
NATURE (2007)
The systems biology markup language (SBML):: a medium for representation and exchange of biochemical network models
M Hucka et al.
BIOINFORMATICS (2003)
The evolution of fungus-growing termites and their mutualistic fungal symbionts
DK Aanen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
分享论文
