相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Epigenetic clocks, aging, and cancer
Sarah E. Johnstone et al.
SCIENCE (2022)
Clinical validation of a targeted methylation-based multi-cancer early detection test using an independent validation set
E. A. Klein et al.
ANNALS OF ONCOLOGY (2021)
Sensitive and specific multi-cancer detection and localization using methylation signatures in cell-free DNA
M. C. Liu et al.
ANNALS OF ONCOLOGY (2020)
Large-Scale Topological Changes Restrain Malignant Progression in Colorectal Cancer
Sarah E. Johnstone et al.
CELL (2020)
The DNA methylation landscape of advanced prostate cancer
Shuang G. Zhao et al.
NATURE GENETICS (2020)
Unveiling the heterogeneity of NKT cells in the liver through single cell RNA sequencing
Hao Shen et al.
SCIENTIFIC REPORTS (2020)
A guide to cancer immunotherapy: from T cell basic science to clinical practice
Alex D. Waldman et al.
NATURE REVIEWS IMMUNOLOGY (2020)
Genome-wide association study identifies CD1A associated with rate of increase in plasma neurofilament light in non-demented elders
Zuo-Teng Wang et al.
AGING-US (2019)
Immunotherapy for Prostate Cancer
Nicholas J. Venturini et al.
COLD SPRING HARBOR PERSPECTIVES IN MEDICINE (2019)
Antigen presentation and tumor immunogenicity in cancer immunotherapy response prediction
Shixiang Wang et al.
ELIFE (2019)
Targeted methylation sequencing of plasma cell-free DNA for cancer detection and classification
L. Liu et al.
ANNALS OF ONCOLOGY (2018)
DNA methylation loss in late-replicating domains is linked to mitotic cell division
Wanding Zhou et al.
NATURE GENETICS (2018)
An RNA-Based Digital Circulating Tumor Cell Signature Is Predictive of Drug Response and Early Dissemination in Prostate Cancer
David T. Miyamoto et al.
CANCER DISCOVERY (2018)
Single-cell multiomics sequencing and analyses of human colorectal cancer
Shuhui Bian et al.
SCIENCE (2018)
Detecting DNA cytosine methylation using nanopore sequencing
Jared T. Simpson et al.
NATURE METHODS (2017)
Mapping DNA methylation with high-throughput nanopore sequencing
Arthur C. Rand et al.
NATURE METHODS (2017)
Genome-wide base-resolution mapping of DNA methylation in single cells using single-cell bisulfite sequencing( scBS-seq)
Stephen J. Clark et al.
NATURE PROTOCOLS (2017)
The 2014 International Society of Urological Pathology (ISUP) Consensus Conference on Gleason Grading of Prostatic Carcinoma Definition of Grading Patterns and Proposal for a New Grading System
Jonathan I. Epstein et al.
AMERICAN JOURNAL OF SURGICAL PATHOLOGY (2016)
regioneR: an R/Bioconductor package for the association analysis of genomic regions based on permutation tests
Bernat Gel et al.
BIOINFORMATICS (2016)
Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas
Yu Hou et al.
CELL RESEARCH (2016)
A Contemporary Prostate Cancer Grading System: A Validated Alternative to the Gleason Score
Jonathan I. Epstein et al.
EUROPEAN UROLOGY (2016)
Polymorphisms in exon 2 of CD1 genes are associated with susceptibility to Guillain-Barre syndrome
Hongbo Liu et al.
JOURNAL OF THE NEUROLOGICAL SCIENCES (2016)
deepTools2: a next generation web server for deep-sequencing data analysis
Fidel Ramirez et al.
NUCLEIC ACIDS RESEARCH (2016)
Mechanisms and Consequences of Antigen Presentation by CD1
Luc Van Kaer et al.
TRENDS IN IMMUNOLOGY (2016)
Epigenetic Determinants of Cancer
Stephen B. Baylin et al.
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2016)
Novel tumor suppressor microRNA at frequently deleted chromosomal region 8p21 regulates Epidermal Growth Factor Receptor in prostate cancer
Nathan Bucay et al.
ONCOTARGET (2016)
Sambamba: fast processing of NGS alignment formats
Artem Tarasov et al.
BIOINFORMATICS (2015)
PRROC: computing and visualizing precision-recall and receiver operating characteristic curves in R
Jan Grau et al.
BIOINFORMATICS (2015)
The Molecular Taxonomy of Primary Prostate Cancer
Adam Abeshouse et al.
CELL (2015)
Interactive analysis and assessment of single-cell copy-number variations
Tyler Garvin et al.
NATURE METHODS (2015)
RNA-Seq of single prostate CTCs implicates noncanonical Wnt signaling in antiandrogen resistance
David T. Miyamoto et al.
SCIENCE (2015)
An ultra-low-input native ChIP-seq protocol for genome-wide profiling of rare cell populations
Julie Brind'Amour et al.
NATURE COMMUNICATIONS (2015)
The Regulatory Role of Invariant NKT Cells in Tumor Immunity
Rosanna M. McEwen-Smith et al.
CANCER IMMUNOLOGY RESEARCH (2015)
HTSeq-a Python framework to work with high-throughput sequencing data
Simon Anders et al.
BIOINFORMATICS (2015)
The emerging role of human PYHIN proteins in innate immunity: Implications for health and disease
Dympna J. Connolly et al.
BIOCHEMICAL PHARMACOLOGY (2014)
Large-scale hypomethylated blocks associated with Epstein-Barr virus-induced B-cell immortalization
Kasper D. Hansen et al.
GENOME RESEARCH (2014)
Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity
Sebastien A. Smallwood et al.
NATURE METHODS (2014)
Full-length RNA-seq from single cells using Smart-seq2
Simone Picelli et al.
NATURE PROTOCOLS (2014)
Blood-Based Analyses of Cancer: Circulating Tumor Cells and Circulating Tumor DNA
Daniel A. Haber et al.
CANCER DISCOVERY (2014)
Large hypomethylated blocks as a universal defining epigenetic alteration in human solid tumors
Winston Timp et al.
GENOME MEDICINE (2014)
Whole-Genome Methylation Sequencing Reveals Distinct Impact of Differential Methylations on Gene Transcription in Prostate Cancer
Yan P. Yu et al.
AMERICAN JOURNAL OF PATHOLOGY (2013)
Prostate cancer originating in basal cells progresses to adenocarcinoma propagated by luminal-like cells
Tanya Stoyanova et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Inertial Focusing for Tumor Antigen-Dependent and -Independent Sorting of Rare Circulating Tumor Cells
Emre Ozkumur et al.
SCIENCE TRANSLATIONAL MEDICINE (2013)
Invariant natural killer T cells: an innate activation scheme linked to diverse effector functions
Patrick J. Brennan et al.
NATURE REVIEWS IMMUNOLOGY (2013)
Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer
Gary C. Hon et al.
GENOME RESEARCH (2012)
Suppressor role of androgen receptor in proliferation of prostate basal epithelial and progenitor cells
Soo Ok Lee et al.
JOURNAL OF ENDOCRINOLOGY (2012)
Absolute quantification of somatic DNA alterations in human cancer
Scott L. Carter et al.
NATURE BIOTECHNOLOGY (2012)
Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina-associated domains
Benjamin P. Berman et al.
NATURE GENETICS (2012)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
NATURE PROTOCOLS (2012)
Human Epithelial Basal Cells Are Cells of Origin of Prostate Cancer, Independent of CD133 Status
Renea A. Taylor et al.
STEM CELLS (2012)
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
Felix Krueger et al.
BIOINFORMATICS (2011)
Molecular signatures database (MSigDB) 3.0
Arthur Liberzon et al.
BIOINFORMATICS (2011)
Replication timing-related and gene body-specific methylation of active human genes
Dvir Aran et al.
HUMAN MOLECULAR GENETICS (2011)
Increased methylation variation in epigenetic domains across cancer types
Kasper Daniel Hansen et al.
NATURE GENETICS (2011)
CD1d-Expressing Breast Cancer Cells Modulate NKT Cell-Mediated Antitumor Immunity in a Murine Model of Breast Cancer Metastasis
Laura M. Hix et al.
PLOS ONE (2011)
Cancer Immunoediting: Integrating Immunity's Roles in Cancer Suppression and Promotion
Robert D. Schreiber et al.
SCIENCE (2011)
Isolation and Characterization of Circulating Tumor Cells from Patients with Localized and Metastatic Prostate Cancer
Shannon L. Stott et al.
SCIENCE TRANSLATIONAL MEDICINE (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
Erez Lieberman-Aiden et al.
SCIENCE (2009)
DNA Hypomethylation Arises Later in Prostate Cancer Progression than CpG Island Hypermethylation and Contributes to Metastatic Tumor Heterogeneity
Srinivasan Yegnasubramanian et al.
CANCER RESEARCH (2008)
Phenotypic analysis of prostate-infiltrating lymphocytes reveals TH17 and Treg skewing
Karen Sandell Sfanos et al.
CLINICAL CANCER RESEARCH (2008)
QUMA: quantification tool for methylation analysis
Yuichi Kumaki et al.
NUCLEIC ACIDS RESEARCH (2008)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
Decreased NKX3.1 protein expression in focal prostatic atrophy, prostatic Intraepithelial neoplasia, and adenocarcinoma: Association with Gleason score and chromosome 8p deletion
Carlise R. Bethel et al.
CANCER RESEARCH (2006)
The UCSC Genome Browser Database: update 2006
A. S. Hinrichs et al.
NUCLEIC ACIDS RESEARCH (2006)
Context-dependent hormone-refractory progression revealed through characterization of a novel murine prostate cancer cell line
PA Watson et al.
CANCER RESEARCH (2005)
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
A Subramanian et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Hypermethylation of CpG islands in primary and metastatic human prostate cancer
S Yegnasubramanian et al.
CANCER RESEARCH (2004)
The Dnmt1 DNA-(cytosine-C5)-methyltransferase methylates DNA processively with high preference for hemimethylated target sites
A Hermann et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
The UCSC Table Browser data retrieval tool
D Karolchik et al.
NUCLEIC ACIDS RESEARCH (2004)
CpG island hypermethylation and tumor suppressor genes: a booming present, a brighter future
M Esteller
ONCOGENE (2002)