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Charlotte A. Jones et al.
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Kolos V. Szabo et al.
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Olga M. Sigalova et al.
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Robert D. Stewart et al.
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Abdulazeem Abdulsalam Ibrahim Alkhidir et al.
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fastp: an ultra-fast all-in-one FASTQ preprocessor
Shifu Chen et al.
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Bart Versteeg et al.
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Konrad Sachse et al.
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Phandango: an interactive viewer for bacterial population genomics
James Hadfield et al.
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V. L. Ferreira et al.
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MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
Martin Steinegger et al.
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Thomas Eder et al.
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Psittacosis outbreak in Tayside, Scotland, December 2011 to February 2012
C C McGuigan et al.
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SEROPREVALENCE OF CHLAMYDOPHILA PSITTACI AMONG EMPLOYEES OF TWO GERMAN DUCK FARMS
Raimond Lugert et al.
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Weina Guo et al.
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Eileen Roulis et al.
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Bernard J. Wolff et al.
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Fabien Vorimore et al.
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Avian Chlamydiosis
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Carol A. Bonner et al.
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ART: a next-generation sequencing read simulator
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The limitations of draft assemblies for understanding prokaryotic adaptation and evolution
N. Ricker et al.
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Anton Bankevich et al.
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Anja Voigt et al.
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Unity in Variety-The Pan-Genome of the Chlamydiae
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The Newick utilities: high-throughput phylogenetic tree processing in the Unix shell
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