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Sarah A. McClymont et al.
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C. Marras et al.
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Hi-C 2.0: An optimized Hi-C procedure for high-resolution genome-wide mapping of chromosome conformation
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Massively parallel digital transcriptional profiling of single cells
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UpSetR: an R package for the visualization of intersecting sets and their properties
Jake R. Conway et al.
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Jason Ernst et al.
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