相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。fastp: an ultra-fast all-in-one FASTQ preprocessor
Shifu Chen et al.
BIOINFORMATICS (2018)
Effect of β-lactam antibiotic resistance gene expression on the radio-resistance profile of E. coli O157:H7
Ghizlane Gaougaou et al.
HELIYON (2018)
PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance
Celine Nadon et al.
EUROSURVEILLANCE (2017)
Arabidopsis EDT1/HDG11 improves drought and salt tolerance in cotton and poplar and increases cotton yield in the field
Lin-Hui Yu et al.
PLANT BIOTECHNOLOGY JOURNAL (2016)
ParDRe: faster parallel duplicated reads removal tool for sequencing studies
Jorge Gonzalez-Dominguez et al.
BIOINFORMATICS (2016)
Survival and SOS response induction in ultraviolet B irradiated Escherichia coli cells with defective repair mechanisms
Cesar Augusto Prada Medina et al.
INTERNATIONAL JOURNAL OF RADIATION BIOLOGY (2016)
Oxidative Stress in Shiga Toxin Production by Enterohemorrhagic Escherichia coli
Katarzyna Licznerska et al.
OXIDATIVE MEDICINE AND CELLULAR LONGEVITY (2016)
The Use and Abuse of LexA by Mobile Genetic Elements
Nadine Fornelos et al.
TRENDS IN MICROBIOLOGY (2016)
Stx1 prophage excision in Escherichia coli strain PA20 confers strong curli and biofilm formation by restoring native mlrA
Gaylen A. Uhlich et al.
FEMS MICROBIOLOGY LETTERS (2016)
Transcriptomic Analysis of Shiga-Toxigenic Bacteriophage Carriage Reveals a Profound Regulatory Effect on Acid Resistance in Escherichia coli
Marta Veses-Garcia et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)
A new perspective on lysogeny: prophages as active regulatory switches of bacteria
Ron Feiner et al.
NATURE REVIEWS MICROBIOLOGY (2015)
Escherichia coli O157:H7 bacteriophage Φ241 isolated from an industrial cucumber fermentation at high acidity and salinity
Zhongjing Lu et al.
FRONTIERS IN MICROBIOLOGY (2015)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
Backseat drivers: the hidden influence of microbial viruses on disease
Mary-Anne Hartley et al.
CURRENT OPINION IN MICROBIOLOGY (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
A Novel Escherichia coli O157:H7 Clone Causing a Major Hemolytic Uremic Syndrome Outbreak in China
Yanwen Xiong et al.
PLOS ONE (2012)
Lysogeny with Shiga Toxin 2-Encoding Bacteriophages Represses Type III Secretion in Enterohemorrhagic Escherichia coli
Xuefang Xu et al.
PLOS PATHOGENS (2012)
Hydrogen peroxide-mediated induction of the Shiga toxin-converting lambdoid prophage ST2-8624 in Escherichia coli O157:H7
Joanna M. Los et al.
FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY (2010)
Repression of sigK Intervening (skin) Element Gene Expression by the CI-Like Protein SknR and Effect of SknR Depletion on Growth of Bacillus subtilis Cells
Tatsu Kimura et al.
JOURNAL OF BACTERIOLOGY (2010)
Lysogenic infection of a Shiga toxin 2-converting bacteriophage changes host gene expression, enhances host acid resistance and motility
L. K. Su et al.
MOLECULAR BIOLOGY (2010)
Molecular mechanisms of Escherichia coli pathogenicity
Matthew A. Croxen et al.
NATURE REVIEWS MICROBIOLOGY (2010)
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
Aaron E. Darling et al.
PLOS ONE (2010)
Cryptic prophages help bacteria cope with adverse environments
Xiaoxue Wang et al.
NATURE COMMUNICATIONS (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Directed Evolution of Ionizing Radiation Resistance in Escherichia coli
Dennis R. Harris et al.
JOURNAL OF BACTERIOLOGY (2009)
Identification of multiple integration sites for Stx-phage Φ24B in the Escherichia coli genome, description of a novel integrase and evidence for a functional anti-repressor
Paul C. M. Fogg et al.
MICROBIOLOGY-SGM (2007)
Modelling the stability of Stx lysogens
Thomas Evans et al.
JOURNAL OF THEORETICAL BIOLOGY (2007)
Phage regulatory circuits and virulence gene expression
MK Waldor et al.
CURRENT OPINION IN MICROBIOLOGY (2005)
Evolution of genomic content in the stepwise emergence of Escherichia coli O157:H7
LM Wick et al.
JOURNAL OF BACTERIOLOGY (2005)
Shiga toxin-encoding bacteriophages - genomes in motion
S Herold et al.
INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY (2004)
Phages and the evolution of bacterial pathogens:: From genomic rearrangements to lysogenic conversion
H Brüssow et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2004)
The impact of prophages on bacterial chromosomes
C Canchaya et al.
MOLECULAR MICROBIOLOGY (2004)
Escherichia coli O157:H7 Shiga toxin-encoding bacteriophages:: integrations, excisions, truncations, and evolutionary implications
N Shaikh et al.
JOURNAL OF BACTERIOLOGY (2003)
Filamentous phage integration requires the host recombinases XerC and XerD
KE Huber et al.
NATURE (2002)
Physical interactions between DinI and RecA nucleoprotein filament for the regulation of SOS mutagenesis
T Yasuda et al.
EMBO JOURNAL (2001)
Genome sequence of enterohaemorrhagic Escherichia coli O157:H7
NT Perna et al.
NATURE (2001)
Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak
K Yokoyama et al.
GENE (2000)