4.5 Article

Assessment of copy number variants in three Brazilian locally adapted cattle breeds using whole-genome re-sequencing data

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Agriculture, Dairy & Animal Science

Genome-Wide Association Analysis of Growth Curve Parameters in Chinese Simmental Beef Cattle

Xinghai Duan et al.

Summary: By comparing three nonlinear models describing body weight data of Chinese Simmental beef cattle, 87 significant SNPs associated with body weight were identified, along with many candidate genes. Through single-trait and multi-trait GWAS analysis, significant SNPs related to body weight were determined, with several candidate genes previously reported to associate with growth and development. Further research on these candidate genes may aid in exploring the full genetic architecture underlying growth and development traits in livestock.

ANIMALS (2021)

Review Cell Biology

Lipid metabolism in adaptation to extreme nutritional challenges

Luke Olsen et al.

Summary: Animals have evolved various strategies to store and mobilize lipids in response to extreme starvation conditions, storing fat when food is abundant and utilizing it during periods of scarcity. These strategies come with resilience phenotypes that aid in developing and tolerating profound metabolic adaptations.

DEVELOPMENTAL CELL (2021)

Article Agriculture, Dairy & Animal Science

Genome-wide detection of copy-number variations in local cattle breeds

Rosalia Di Gerlando et al.

ANIMAL PRODUCTION SCIENCE (2019)

Article Biochemistry & Molecular Biology

Genetic Architecture and Selection of Chinese Cattle Revealed by Whole Genome Resequencing

Chugang Mei et al.

MOLECULAR BIOLOGY AND EVOLUTION (2018)

Article Biochemistry & Molecular Biology

SORCS1 and SORCS3 control energy balance and orexigenic peptide production

Aygul Subkhangulova et al.

EMBO REPORTS (2018)

Article Agriculture, Dairy & Animal Science

Copy number variation regions in Nellore cattle: Evidences of environment adaptation

Marcos Vinicius Antunes de Lemos et al.

LIVESTOCK SCIENCE (2018)

Article Ecology

Bison body size and climate change

Jeff M. Martin et al.

ECOLOGY AND EVOLUTION (2018)

Article Agriculture, Dairy & Animal Science

A genome wide association study between CNVs and quantitative traits in Brown Swiss cattle

R. T. M. M. Prinsen et al.

LIVESTOCK SCIENCE (2017)

Article Genetics & Heredity

Distribution and Functionality of Copy Number Variation across European Cattle Populations

Maulik Upadhyay et al.

FRONTIERS IN GENETICS (2017)

Review Agriculture, Dairy & Animal Science

Tropically adapted cattle of Africa: perspectives on potential role of copy number variations

M. D. Wang et al.

ANIMAL GENETICS (2016)

Article Biochemistry & Molecular Biology

Developmental progress and current status of the Animal QTLdb

Zhi-Liang Hu et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemical Research Methods

Software for Computing and Annotating Genomic Ranges

Michael Lawrence et al.

PLOS COMPUTATIONAL BIOLOGY (2013)

Article Genetics & Heredity

Analysis of copy number variants in the cattle genome

James W. Kijas et al.

Article Biotechnology & Applied Microbiology

A first comparative map of copy number variations in the sheep genome

L. Fontanesi et al.

GENOMICS (2011)

Article Biotechnology & Applied Microbiology

Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants

Dalila Pinto et al.

NATURE BIOTECHNOLOGY (2011)

Article Ecology

Declining body size: a third universal response to warming?

Janet L. Gardner et al.

TRENDS IN ECOLOGY & EVOLUTION (2011)

Article Biochemical Research Methods

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan et al.

BIOINFORMATICS (2010)

Article Biotechnology & Applied Microbiology

Copy number variation in the bovine genome

Joao Fadista et al.

BMC GENOMICS (2010)

Article Biochemistry & Molecular Biology

Analysis of copy number variations among diverse cattle breeds

George E. Liu et al.

GENOME RESEARCH (2010)

Article Genetics & Heredity

Mutation spectrum revealed by breakpoint sequencing of human germline CNVs

Donald F. Conrad et al.

NATURE GENETICS (2010)

Review Genetics & Heredity

Copy Number Variation in Human Health, Disease, and Evolution

Feng Zhang et al.

ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS (2009)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Review Biochemistry & Molecular Biology

Copy number variants, diseases and gene expression

Charlotte N. Henrichsen et al.

HUMAN MOLECULAR GENETICS (2009)

Article Agriculture, Dairy & Animal Science

Present status of the conservation of livestock genetic resources in Brazil

A. da S. Mariante et al.

LIVESTOCK SCIENCE (2009)

Article Biochemical Research Methods

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

Da Wei Huang et al.

NATURE PROTOCOLS (2009)

Editorial Material Biochemistry & Molecular Biology

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

Da Wei Huang et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

BioMart Central Portal-unified access to biological data

Syed Haider et al.

NUCLEIC ACIDS RESEARCH (2009)

Review Multidisciplinary Sciences

The proteasome: Overview of structure and functions

Keiji Tanaka

PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES (2009)

Review Biochemistry & Molecular Biology

Regulatory T cells and immune tolerance

Shimon Sakaguchi et al.

Article Cell Biology

CNV discovery using SNP genotyping arrays

C. Yau et al.

CYTOGENETIC AND GENOME RESEARCH (2008)

Article Biochemistry & Molecular Biology

Reduced purifying selection prevails over positive selection in human copy number variant evolution

Duc-Quang Nguyen et al.

GENOME RESEARCH (2008)

Review Biochemistry & Molecular Biology

Non-homologous end-joining, a sticky affair

D. C. van Gent et al.

ONCOGENE (2007)

Article Genetics & Heredity

Dynamic evolution of the innate immune system in Drosophila

Timothy B. Sackton et al.

NATURE GENETICS (2007)

Review Genetics & Heredity

Copy number variants and genetic traits: closer to the resolution of phenotypic to genotypic variability

Jacques S. Beckmann et al.

NATURE REVIEWS GENETICS (2007)

Article Genetics & Heredity

Challenges and standards in integrating surveys of structural variation

Stephen W. Scherer et al.

NATURE GENETICS (2007)

Article Genetics & Heredity

Copy-number variation and association studies of human disease

Steven A. McCarroll et al.

NATURE GENETICS (2007)

Article Multidisciplinary Sciences

Global variation in copy number in the human genome

Richard Redon et al.

NATURE (2006)

Review Genetics & Heredity

Structural variation in the human genome

L Feuk et al.

NATURE REVIEWS GENETICS (2006)

Article Obstetrics & Gynecology

Expression of phosphodiesterase 5 in maternal and fetal sheep

KH Coppage et al.

AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY (2005)

Review Immunology

Mammalian defensins in the antimicrobial immune response

ME Selsted et al.

NATURE IMMUNOLOGY (2005)

Article Genetics & Heredity

Variability and evolution of bovine β-defensin genes

K Luenser et al.

GENES AND IMMUNITY (2005)

Review Microbiology

Antimicrobial peptides: Pore formers or metabolic inhibitors in bacteria?

KA Brogden

NATURE REVIEWS MICROBIOLOGY (2005)

Review Agriculture, Multidisciplinary

Body condition at calving and the performance of dairy cows in early lactation under Australian conditions: a review

CR Stockdale

AUSTRALIAN JOURNAL OF EXPERIMENTAL AGRICULTURE (2001)