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Matthew R. Willmann et al.
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Jixian Zhai et al.
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Soeren Mueller et al.
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Chris M. Rands et al.
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Thalia A. Farazi et al.
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Soeren Mueller
TRANSLATIONAL NEURODEGENERATION (2014)
omiRas: a Web server for differential expression analysis of miRNAs derived from small RNA-Seq data
Soeren Mueller et al.
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mirCoX: a database of miRNA-mRNA expression correlations derived from RNA-seq meta-analysis
Cory B. Giles et al.
BMC BIOINFORMATICS (2013)
The nucleosome regulates the usage of polyadenylation sites in the human genome
Huan Huang et al.
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Joint analysis of miRNA and mRNA expression data
Ander Muniategui et al.
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Aleksandra Helwak et al.
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Sujatha Venkataraman et al.
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Rumyana Karlova et al.
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Mainul Hoque et al.
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Allison Doerr
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Alternative cleavage and polyadenylation: extent, regulation and function
Ran Elkon et al.
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A Polymorphic 3′UTR Element in ATP1B1 Regulates Alternative Polyadenylation and Is Associated with Blood Pressure
Megana K. Prasad et al.
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Alternative cleavage and polyadenylation: the long and short of it
Bin Tian et al.
TRENDS IN BIOCHEMICAL SCIENCES (2013)
MicroRNA-target interactions: new insights from genome-wide approaches
Dooyoung Lee et al.
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CPSS: a computational platform for the analysis of small RNA deep sequencing data
Yuanwei Zhang et al.
BIOINFORMATICS (2012)
ncPRO-seq: a tool for annotation and profiling of ncRNAs in sRNA-seq data
Chong-Jian Chen et al.
BIOINFORMATICS (2012)
miRdSNP: a database of disease-associated SNPs and microRNA target sites on 3′UTRs of human genes
Andrew E. Bruno et al.
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Identification of soybean seed developmental stage-specific and tissue-specific miRNA targets by degradome sequencing
Md Shamimuzzaman et al.
BMC GENOMICS (2012)
MirSNP, a database of polymorphisms altering miRNA target sites, identifies miRNA-related SNPs in GWAS SNPs and eQTLs
Chenxing Liu et al.
BMC GENOMICS (2012)
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Michael G. Berg et al.
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Kinetic analysis reveals successive steps leading to miRNA-mediated silencing in mammalian cells
Julien Bethune et al.
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Extensive alternative polyadenylation during zebrafish development
Igor Ulitsky et al.
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A quantitative atlas of polyadenylation in five mammals
Adnan Derti et al.
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Discovery of hundreds of mirtrons in mouse and human small RNA data
Erik Ladewig et al.
GENOME RESEARCH (2012)
Identification of putative miRNAs from the deep-branching unicellular flagellates
Po-Jung Huang et al.
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TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support
Thanasis Vergoulis et al.
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PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing
Leighton Folkes et al.
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Large-Scale Identification of Mirtrons in Arabidopsis and Rice
Yijun Meng et al.
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miRNA-Mediated Gene Silencing by Translational Repression Followed by mRNA Deadenylation and Decay
Sergej Djuranovic et al.
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Ariel A. Bazzini et al.
SCIENCE (2012)
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Laurent F. Thomas et al.
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E2F mediates enhanced alternative polyadenylation in proliferation
Ran Elkon et al.
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Leonardo Salmena et al.
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miRWalk - Database: Prediction of possible miRNA binding sites by walking the genes of three genomes
Harsh Dweep et al.
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Dafne Campigli Di Giammartino et al.
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Formation, regulation and evolution of Caenorhabditis elegans 3′UTRs
Calvin H. Jan et al.
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Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data
Chaolin Zhang et al.
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Small RNA sorting: matchmaking for Argonautes
Benjamin Czech et al.
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Experimental strategies for microRNA target identification
Daniel W. Thomson et al.
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miRConnect: Identifying Effector Genes of miRNAs and miRNA Families in Cancer Cells
Youjia Hua et al.
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Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq
Peter J. Shepard et al.
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Vive la difference: biogenesis and evolution of microRNAs in plants and animals
Michael J. Axtell et al.
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Single-Nucleotide Polymorphisms Inside MicroRNA Target Sites Influence Tumor Susceptibility
Milena S. Nicoloso et al.
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Andreas G. Bader et al.
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Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP
Markus Hafner et al.
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MicroSNiPer: A Web Tool for Prediction of SNP Effects on Putative microRNA Targets
Maxim Barenboim et al.
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Heng-Chi Lee et al.
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U1 snRNP protects pre-mRNAs from premature cleavage and polyadenylation
Daisuke Kaida et al.
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Desperately seeking microRNA targets
Marshall Thomas et al.
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Molecular mechanisms of eukaryotic pre-mRNA 3' end processing regulation
Stefania Millevoi et al.
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Patrocles: a database of polymorphic miRNA-mediated gene regulation in vertebrates
Samuel Hiard et al.
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CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets
Charles Addo-Quaye et al.
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Olivier Voinnet
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David P. Bartel
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Christine Mayr et al.
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Origins and Mechanisms of miRNAs and siRNAs
Richard W. Carthew et al.
CELL (2009)
Most mammalian mRNAs are conserved targets of microRNAs
Robin C. Friedman et al.
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Molecular Architecture of the Human Pre-mRNA 3′ Processing Complex
Yongsheng Shi et al.
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MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression
Seungyoon Nam et al.
NUCLEIC ACIDS RESEARCH (2009)
miRecords: an integrated resource for microRNA-target interactions
Feifei Xiao et al.
NUCLEIC ACIDS RESEARCH (2009)
Reprogramming of 3′ Untranslated Regions of mRNAs by Alternative Polyadenylation in Generation of Pluripotent Stem Cells from Different Cell Types
Zhe Ji et al.
PLOS ONE (2009)
Progressive lengthening of 3′ untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development
Zhe Ji et al.
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miRo: a miRNA knowledge base
A. Lagana et al.
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William Ritchie et al.
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A PROBABILISTIC FRAMEWORK TO IMPROVE MICRORNA TARGET PREDICTION BY INCORPORATING PROTEOMICS DATA
JINGJING LI et al.
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Kexin Chen et al.
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Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome
Charles Addo-Quaye et al.
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Brian D. Gregory et al.
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A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
Qian-Hao Zhu et al.
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Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends
Marcelo A. German et al.
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Mariangela Morlando et al.
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Experimental validation of miRNA targets
Donald E. Kuhn et al.
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Rickard Sandberg et al.
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Shobha Vasudevan et al.
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Michael Kertesz et al.
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J. Graham Ruby et al.
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Attila Molnar et al.
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Pedro Carmona-Saez et al.
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Silencing of microRNAs in vivo with 'antagomirs'
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Bioinformatic identification of candidate cis-regulatory elements involved in human mRNA polyadenylation
J Hu et al.
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Combinatorial microRNA target predictions
A Krek et al.
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VN Kim
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Principles of MicroRNA-target recognition
J Brennecke et al.
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BP Lewis et al.
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Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways
YS Lee et al.
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JD Liu et al.
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JJ Song et al.
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Processing of primary microRNAs by the Microprocessor complex
AM Denli et al.
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BP Lewis et al.
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R Yi et al.
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MW Rhoades et al.
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RF Ketting et al.
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The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans
BJ Reinhart et al.
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