相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。mrSNP: Software to detect SNP effects on microRNA binding
Mehmet Deveci et al.
BMC BIOINFORMATICS (2014)
Driving glioblastoma growth by alternative polyadenylation
Ting Han et al.
CELL RESEARCH (2014)
The panorama of miRNA-mediated mechanisms in mammalian cells
Anna Stroynowska-Czerwinska et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2014)
miR-1, miR-10b, miR-155, and miR-191 are novel regulators of BDNF
Kart Varendi et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2014)
Massive analysis of cDNA ends (MACE) and miRNA expression profiling identifies proatherogenic pathways in chronic kidney disease
Adam M. Zawada et al.
EPIGENETICS (2014)
Global Analyses of the Effect of Different Cellular Contexts on MicroRNA Targeting
Jin-Wu Nam et al.
MOLECULAR CELL (2014)
New Links between mRNA Polyadenylation and Diverse Nuclear Pathways
Dafne Campigli Di Giammartino et al.
MOLECULES AND CELLS (2014)
Improved genome-wide mapping of uncapped and cleaved transcripts in eukaryotes-GMUCT 2.0
Matthew R. Willmann et al.
METHODS (2014)
Rapid construction of parallel analysis of RNA end (PARE) libraries for Illumina sequencing
Jixian Zhai et al.
METHODS (2014)
Role of Virus-Encoded microRNAs in Avian Viral Diseases
Yongxiu Yao et al.
VIRUSES-BASEL (2014)
APADB: a database for alternative polyadenylation and microRNA regulation events
Soeren Mueller et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2014)
8.2% of the Human Genome Is Constrained: Variation in Rates of Turnover across Functional Element Classes in the Human Lineage
Chris M. Rands et al.
PLOS GENETICS (2014)
Identification of distinct miRNA target regulation between breast cancer molecular subtypes using AGO2-PAR-CLIP and patient datasets
Thalia A. Farazi et al.
GENOME BIOLOGY (2014)
In silico analysis of regulatory networks underlines the role of miR-10b-5p and its target BDNF in huntington's disease
Soeren Mueller
TRANSLATIONAL NEURODEGENERATION (2014)
omiRas: a Web server for differential expression analysis of miRNAs derived from small RNA-Seq data
Soeren Mueller et al.
BIOINFORMATICS (2013)
mirCoX: a database of miRNA-mRNA expression correlations derived from RNA-seq meta-analysis
Cory B. Giles et al.
BMC BIOINFORMATICS (2013)
The nucleosome regulates the usage of polyadenylation sites in the human genome
Huan Huang et al.
BMC GENOMICS (2013)
Joint analysis of miRNA and mRNA expression data
Ander Muniategui et al.
BRIEFINGS IN BIOINFORMATICS (2013)
Mapping the Human miRNA Interactome by CLASH Reveals Frequent Noncanonical Binding
Aleksandra Helwak et al.
CELL (2013)
Widespread and extensive lengthening of 3′ UTRs in the mammalian brain
Pedro Miura et al.
GENOME RESEARCH (2013)
MicroRNA 218 Acts as a Tumor Suppressor by Targeting Multiple Cancer Phenotype-associated Genes in Medulloblastoma
Sujatha Venkataraman et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2013)
Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis
Rumyana Karlova et al.
JOURNAL OF EXPERIMENTAL BOTANY (2013)
Analysis of alternative cleavage and polyadenylation by 3′ region extraction and deep sequencing
Mainul Hoque et al.
NATURE METHODS (2013)
Mass spectrometry-based targeted proteomics
Allison Doerr
NATURE METHODS (2013)
Alternative cleavage and polyadenylation: extent, regulation and function
Ran Elkon et al.
NATURE REVIEWS GENETICS (2013)
A Polymorphic 3′UTR Element in ATP1B1 Regulates Alternative Polyadenylation and Is Associated with Blood Pressure
Megana K. Prasad et al.
PLOS ONE (2013)
Alternative cleavage and polyadenylation: the long and short of it
Bin Tian et al.
TRENDS IN BIOCHEMICAL SCIENCES (2013)
MicroRNA-target interactions: new insights from genome-wide approaches
Dooyoung Lee et al.
NUTRITION AND PHYSICAL ACTIVITY IN AGING, OBESITY, AND CANCER (2012)
CPSS: a computational platform for the analysis of small RNA deep sequencing data
Yuanwei Zhang et al.
BIOINFORMATICS (2012)
ncPRO-seq: a tool for annotation and profiling of ncRNAs in sRNA-seq data
Chong-Jian Chen et al.
BIOINFORMATICS (2012)
miRdSNP: a database of disease-associated SNPs and microRNA target sites on 3′UTRs of human genes
Andrew E. Bruno et al.
BMC GENOMICS (2012)
Identification of soybean seed developmental stage-specific and tissue-specific miRNA targets by degradome sequencing
Md Shamimuzzaman et al.
BMC GENOMICS (2012)
MirSNP, a database of polymorphisms altering miRNA target sites, identifies miRNA-related SNPs in GWAS SNPs and eQTLs
Chenxing Liu et al.
BMC GENOMICS (2012)
U1 snRNP Determines mRNA Length and Regulates Isoform Expression
Michael G. Berg et al.
CELL (2012)
Kinetic analysis reveals successive steps leading to miRNA-mediated silencing in mammalian cells
Julien Bethune et al.
EMBO REPORTS (2012)
Extensive alternative polyadenylation during zebrafish development
Igor Ulitsky et al.
GENOME RESEARCH (2012)
A quantitative atlas of polyadenylation in five mammals
Adnan Derti et al.
GENOME RESEARCH (2012)
Discovery of hundreds of mirtrons in mouse and human small RNA data
Erik Ladewig et al.
GENOME RESEARCH (2012)
Identification of putative miRNAs from the deep-branching unicellular flagellates
Po-Jung Huang et al.
GENOMICS (2012)
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support
Thanasis Vergoulis et al.
NUCLEIC ACIDS RESEARCH (2012)
PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing
Leighton Folkes et al.
NUCLEIC ACIDS RESEARCH (2012)
Large-Scale Identification of Mirtrons in Arabidopsis and Rice
Yijun Meng et al.
PLOS ONE (2012)
miRNA-Mediated Gene Silencing by Translational Repression Followed by mRNA Deadenylation and Decay
Sergej Djuranovic et al.
SCIENCE (2012)
Ribosome Profiling Shows That miR-430 Reduces Translation Before Causing mRNA Decay in Zebrafish
Ariel A. Bazzini et al.
SCIENCE (2012)
Single Nucleotide Polymorphisms Can Create Alternative Polyadenylation Signals and Affect Gene Expression through Loss of MicroRNA-Regulation
Laurent F. Thomas et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
E2F mediates enhanced alternative polyadenylation in proliferation
Ran Elkon et al.
GENOME BIOLOGY (2012)
A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?
Leonardo Salmena et al.
CELL (2011)
Ending the message: poly(A) signals then and now
Nick J. Proudfoot
GENES & DEVELOPMENT (2011)
miRWalk - Database: Prediction of possible miRNA binding sites by walking the genes of three genomes
Harsh Dweep et al.
JOURNAL OF BIOMEDICAL INFORMATICS (2011)
Mechanisms and Consequences of Alternative Polyadenylation
Dafne Campigli Di Giammartino et al.
MOLECULAR CELL (2011)
Formation, regulation and evolution of Caenorhabditis elegans 3′UTRs
Calvin H. Jan et al.
NATURE (2011)
Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data
Chaolin Zhang et al.
NATURE BIOTECHNOLOGY (2011)
Small RNA sorting: matchmaking for Argonautes
Benjamin Czech et al.
NATURE REVIEWS GENETICS (2011)
Experimental strategies for microRNA target identification
Daniel W. Thomson et al.
NUCLEIC ACIDS RESEARCH (2011)
miRConnect: Identifying Effector Genes of miRNAs and miRNA Families in Cancer Cells
Youjia Hua et al.
PLOS ONE (2011)
Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq
Peter J. Shepard et al.
RNA (2011)
Vive la difference: biogenesis and evolution of microRNAs in plants and animals
Michael J. Axtell et al.
GENOME BIOLOGY (2011)
Single-Nucleotide Polymorphisms Inside MicroRNA Target Sites Influence Tumor Susceptibility
Milena S. Nicoloso et al.
CANCER RESEARCH (2010)
The Promise of MicroRNA Replacement Therapy
Andreas G. Bader et al.
CANCER RESEARCH (2010)
Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP
Markus Hafner et al.
CELL (2010)
MicroSNiPer: A Web Tool for Prediction of SNP Effects on Putative microRNA Targets
Maxim Barenboim et al.
HUMAN MUTATION (2010)
Diverse Pathways Generate MicroRNA-like RNAs and Dicer-Independent Small Interfering RNAs in Fungi
Heng-Chi Lee et al.
MOLECULAR CELL (2010)
U1 snRNP protects pre-mRNAs from premature cleavage and polyadenylation
Daisuke Kaida et al.
NATURE (2010)
Desperately seeking microRNA targets
Marshall Thomas et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2010)
Molecular mechanisms of eukaryotic pre-mRNA 3' end processing regulation
Stefania Millevoi et al.
NUCLEIC ACIDS RESEARCH (2010)
Patrocles: a database of polymorphic miRNA-mediated gene regulation in vertebrates
Samuel Hiard et al.
NUCLEIC ACIDS RESEARCH (2010)
CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets
Charles Addo-Quaye et al.
BIOINFORMATICS (2009)
Origin, Biogenesis, and Activity of Plant MicroRNAs
Olivier Voinnet
CELL (2009)
MicroRNAs: Target Recognition and Regulatory Functions
David P. Bartel
CELL (2009)
Widespread Shortening of 3′UTRs by Alternative Cleavage and Polyadenylation Activates Oncogenes in Cancer Cells
Christine Mayr et al.
CELL (2009)
Origins and Mechanisms of miRNAs and siRNAs
Richard W. Carthew et al.
CELL (2009)
Most mammalian mRNAs are conserved targets of microRNAs
Robin C. Friedman et al.
GENOME RESEARCH (2009)
Molecular Architecture of the Human Pre-mRNA 3′ Processing Complex
Yongsheng Shi et al.
MOLECULAR CELL (2009)
MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression
Seungyoon Nam et al.
NUCLEIC ACIDS RESEARCH (2009)
miRecords: an integrated resource for microRNA-target interactions
Feifei Xiao et al.
NUCLEIC ACIDS RESEARCH (2009)
Reprogramming of 3′ Untranslated Regions of mRNAs by Alternative Polyadenylation in Generation of Pluripotent Stem Cells from Different Cell Types
Zhe Ji et al.
PLOS ONE (2009)
Progressive lengthening of 3′ untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development
Zhe Ji et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
miRo: a miRNA knowledge base
A. Lagana et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2009)
Conserved Expression Patterns Predict microRNA Targets
William Ritchie et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
A PROBABILISTIC FRAMEWORK TO IMPROVE MICRORNA TARGET PREDICTION BY INCORPORATING PROTEOMICS DATA
JINGJING LI et al.
Journal of Bioinformatics and Computational Biology (2009)
Polymorphisms in microRNA targets: a gold mine for molecular epidemiology
Kexin Chen et al.
CARCINOGENESIS (2008)
Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome
Charles Addo-Quaye et al.
CURRENT BIOLOGY (2008)
A link between RNA metabolism and silencing affecting Arabidopsis development
Brian D. Gregory et al.
DEVELOPMENTAL CELL (2008)
A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
Qian-Hao Zhu et al.
GENOME RESEARCH (2008)
Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends
Marcelo A. German et al.
NATURE BIOTECHNOLOGY (2008)
Primary microRNA transcripts are processed co-transcriptionally
Mariangela Morlando et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2008)
Experimental validation of miRNA targets
Donald E. Kuhn et al.
METHODS (2008)
Proliferating cells express mRNAs with shortened 3′ untranslated regions and fewer microRNA target sites
Rickard Sandberg et al.
SCIENCE (2008)
Widespread translational inhibition by plant miRNAs and siRNAs
Peter Brodersen et al.
SCIENCE (2008)
Switching from repression to activation: MicroRNAs can up-regulate translation
Shobha Vasudevan et al.
SCIENCE (2007)
The role of site accessibility in microRNA target recognition
Michael Kertesz et al.
NATURE GENETICS (2007)
MicroRNA targeting specificity in mammals: Determinants beyond seed pairing
Andrew Grimson et al.
MOLECULAR CELL (2007)
Intronic microRNA precursors that bypass Drosha processing
J. Graham Ruby et al.
NATURE (2007)
miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
Attila Molnar et al.
NATURE (2007)
High-Throughput Sequencing of Arabidopsis microRNAs: Evidence for Frequent Birth and Death of MIRNA Genes
Noah Fahlgren et al.
PLOS ONE (2007)
GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists
Pedro Carmona-Saez et al.
GENOME BIOLOGY (2007)
Role of brain-derived neurotrophic factor in Huntington's disease
Chiara Zuccato et al.
PROGRESS IN NEUROBIOLOGY (2007)
miRBase: microRNA sequences, targets and gene nomenclature
Sam Griffiths-Jones et al.
NUCLEIC ACIDS RESEARCH (2006)
Silencing of microRNAs in vivo with 'antagomirs'
J Krützfeldt et al.
NATURE (2005)
Bioinformatic identification of candidate cis-regulatory elements involved in human mRNA polyadenylation
J Hu et al.
RNA (2005)
Combinatorial microRNA target predictions
A Krek et al.
NATURE GENETICS (2005)
MicroRNA biogenesis: Coordinated cropping and dicing
VN Kim
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2005)
Principles of MicroRNA-target recognition
J Brennecke et al.
PLOS BIOLOGY (2005)
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
BP Lewis et al.
CELL (2005)
Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways
YS Lee et al.
CELL (2004)
Argonaute2 is the catalytic engine of mammalian RNAi
JD Liu et al.
SCIENCE (2004)
Crystal structure of argonaute and its implications for RISC slicer activity
JJ Song et al.
SCIENCE (2004)
Processing of primary microRNAs by the Microprocessor complex
AM Denli et al.
NATURE (2004)
Prediction of mammalian microRNA targets
BP Lewis et al.
CELL (2003)
Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs
R Yi et al.
GENES & DEVELOPMENT (2003)
Prediction of plant microRNA targets
MW Rhoades et al.
CELL (2002)
Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C-elegans
RF Ketting et al.
GENES & DEVELOPMENT (2001)
The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans
BJ Reinhart et al.
NATURE (2000)