4.7 Article

Transcriptome Profiling of the Liver in Nellore Cattle Phenotypically Divergent for RFI in Two Genetic Groups

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Genetics & Heredity

Identification and characterization of hypothalamic circular RNAs associated with bovine residual feed intake

Lei Zhao et al.

Summary: This study identified key genes and functional pathways associated with phenotypic variation in cattle RFI using RNA sequencing. It revealed the potential regulatory role of circRNAs in feed efficiency and the feeding behavior regulation of livestock.
Article Genetics & Heredity

Identifying the key genes and functional enrichment pathways associated with feed efficiency in cattle

Chaoyun Yang et al.

Summary: This study identified and validated four marker genes for RFI in cattle liver, and found four functional enrichment pathways closely related to RFI. These findings provide new insights into the molecular mechanisms related to the regulation of feed efficiency in beef cattle.
Article Biochemistry & Molecular Biology

RMRP inhibition prevents NAFLD progression in rats via regulating miR-206/PTPN1 axis

Jingjing Yin et al.

Summary: This study investigates the regulatory function of lncRNA RMRP in NAFLD and finds that RMRP inhibition improves the pathological state of NAFLD and prevents its progression via the miR-206/PTPN1 axis.

MAMMALIAN GENOME (2022)

Review Biochemistry & Molecular Biology

Secreted Non-Coding RNAs: Functional Impact on the Tumor Microenvironment and Clinical Relevance in Triple-Negative Breast Cancer

Silvia Di Agostino et al.

Summary: Triple-negative breast cancer (TNBC) is a subtype of breast carcinoma with poor prognosis and limited targeted treatment options. Non-coding RNAs (ncRNAs) have been shown to drive oncogenic processes in TNBC, contributing to tumor progression and treatment resistance. These ncRNAs can be secreted in the tumor microenvironment and circulate in the bloodstream, potentially serving as non-invasive diagnostic and therapeutic tools in TNBC.

NON-CODING RNA (2022)

Review Biology

Non-coding RNAs: the new central dogma of cancer biology

Phei Er Saw et al.

Summary: Non-coding RNAs play crucial roles in cellular regulation and have been identified as key players in various networks, with both oncogenic and tumor suppressive functions in major cancers. Further understanding of ncRNAs could lead to more personalized therapeutic strategies.

SCIENCE CHINA-LIFE SCIENCES (2021)

Article Oncology

Non-coding RNAs, guardians of the p53 galaxy

Song Chen et al.

Summary: This review highlights the important roles of the TP53 gene and its protein product, p53, in tumor development, discussing how ncRNAs contribute to tumorigenesis by modulating levels and activity of p53, and their roles within the p53 regulatory network.

SEMINARS IN CANCER BIOLOGY (2021)

Article Biochemistry & Molecular Biology

Global Proteotoxicity Caused by Human β2 Microglobulin Variants Impairs the Unfolded Protein Response in C. elegans

Sarah C. Good et al.

Summary: Aggregation of beta(2) microglobulin into amyloid fibrils is associated with systemic amyloidosis, with different variants causing distinct pathogenic mechanisms. Expression of beta(2) microglobulin variants in transgenic C. elegans leads to increased proteotoxicity, reduced motility, delayed development, and shortened lifespan, linked to endogenous protein aggregation. Interestingly, all beta(2)m variants exhibit reduced protein secretion, potentially suggesting a disrupted ER secretory metabolism as a link to organismal toxicity.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2021)

Article Food Science & Technology

Associations of feed efficiency with circulating IGF-1 and leptin, carcass traits and meat quality of lambs

N. L. L. L. Montelli et al.

Summary: The study investigated the effects of feed efficiency classifications on lamb measurements, circulating leptin and IGF-1 concentrations, and carcass traits. Results showed that more efficient lambs had higher leptin and IGF-1 levels and produced similar carcass characteristics and meat quality as less efficient lambs, with the strategic advantage of lower feed intake.

MEAT SCIENCE (2021)

Article Genetics & Heredity

Identification of Predictor Genes for Feed Efficiency in Beef Cattle by Applying Machine Learning Methods to Multi-Tissue Transcriptome Data

Weihao Chen et al.

Summary: This study evaluated the performance of different ML methods in predicting high and low feed efficiency animals using RNA sequencing data. The results demonstrate that combining ML methods, such as RF and XGBoost, can identify biologically important genes for accurately classifying FE animals.

FRONTIERS IN GENETICS (2021)

Article Cell Biology

ncRNAs regulate bovine adipose tissue deposition

Zhaoxiong Lei et al.

Summary: Lipid metabolism is critical for cellular functions, with adipose tissue playing key roles in maintaining homeostasis and regulating other tissues. Non-coding RNAs act as crucial regulators of gene expression in adipocytes, influencing adipogenesis.

MOLECULAR AND CELLULAR BIOCHEMISTRY (2021)

Review Cell Biology

Long Non-coding RNA RMRP in the Pathogenesis of Human Disorders

Bashdar Mahmud Hussen et al.

Summary: RMRP, a non-coding transcript associated with cartilage-hair hypoplasia syndrome, plays a role in cancer pathogenesis as a sponge for miRNAs such as miR-206, miR-613, and miR-217, affecting the expression of multiple miRNAs.

FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY (2021)

Review Agriculture, Dairy & Animal Science

Invited review: Disentangling residual feed intake-Insights and approaches to make it more fit for purpose in the modern context

Pauline Martin et al.

Summary: RFI is a widely used trait for analyzing feed efficiency in livestock, with different models and predictors leading to difficulty in comparing results. By dissecting the components of the RFI equation, a better understanding of the biological processes influencing efficiency variation can be gained. Therefore, breaking down the residual term, energy sinks, and intake term in RFI estimation is crucial for livestock production moving towards sustainable efficiency.

JOURNAL OF DAIRY SCIENCE (2021)

Article Biotechnology & Applied Microbiology

Noncoding RNA therapeutics - challenges and potential solutions

Melanie Winkle et al.

Summary: In recent years, RNA-based therapies have gained FDA approval, but there are still challenges in targeting ncRNAs. Therapeutic targeting of noncoding RNAs has the potential to become a new approach for treating diseases such as cancer.

NATURE REVIEWS DRUG DISCOVERY (2021)

Article Multidisciplinary Sciences

Transcriptome profiling analysis of muscle tissue reveals potential candidate genes affecting water holding capacity in Chinese Simmental beef cattle

Lili Du et al.

Summary: This study investigated the molecular mechanism underlying water holding capacity (WHC) in Chinese Simmental beef cattle by conducting RNA sequencing on longissimus dorsi (LD) muscles. Significant correlations were found between WHC and water loss, IMF content, and specific genes were identified as potential novel candidate genes affecting WHC. The findings offer important insight for understanding the regulation of WHC and improving beef quality.

SCIENTIFIC REPORTS (2021)

Article Agriculture, Dairy & Animal Science

Mitochondrial abundance and function in muscle from beef steers with divergent residual feed intakes

E. E. Fernandez et al.

ANIMAL (2020)

Review Cell Biology

Resveratrol targeting the Wnt signaling pathway: A focus on therapeutic activities

Milad Ashrafizadeh et al.

JOURNAL OF CELLULAR PHYSIOLOGY (2020)

Article Endocrinology & Metabolism

Systematic identification of long intergenic non-coding RNAs expressed in bovine oocytes

Jian Wang et al.

REPRODUCTIVE BIOLOGY AND ENDOCRINOLOGY (2020)

Article Biochemistry & Molecular Biology

Identification and Annotation of Potential Function of Regulatory Antisense Long Non-Coding RNAs Related to Feed Efficiency in Bos taurus Bulls

Wietje Nolte et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2020)

Review Biochemistry & Molecular Biology

Mitochondrial proteostasis in the context of cellular and organismal health and aging

Erica A. Moehle et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2019)

Editorial Material Cell Biology

Mitochondria in Health and Disease

Sarah J. Annesley et al.

Review Cell Biology

Reactive Oxygen Species-Induced Lipid Peroxidation in Apoptosis, Autophagy, and Ferroptosis

Lian-Jiu Su et al.

OXIDATIVE MEDICINE AND CELLULAR LONGEVITY (2019)

Article Biochemistry & Molecular Biology

miR-25 inhibits sepsis-induced cardiomyocyte apoptosis by targetting PTEN

Yulong Yao et al.

BIOSCIENCE REPORTS (2018)

Article Agriculture, Dairy & Animal Science

Reaction norm for yearling weight in beef cattle using single-step genomic evaluation

D. P. Oliveira et al.

JOURNAL OF ANIMAL SCIENCE (2018)

Article Multidisciplinary Sciences

Reducing food's environmental impacts through producers and consumers

J. Poore et al.

SCIENCE (2018)

Article

A myriad of roles of miR-25 in health and disease

Márta Sárközy et al.

Oncotarget (2018)

Review Biochemistry & Molecular Biology

The PIN-FORMED Auxin Efflux Carriers in Plants

Jing-Jing Zhou et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2018)

Article Agriculture, Dairy & Animal Science

Genome-wide scan reveals population stratification and footprints of recent selection in Nelore cattle

Diercles F. Cardoso et al.

GENETICS SELECTION EVOLUTION (2018)

Review Agriculture, Dairy & Animal Science

Mining long noncoding RNA in livestock

R. Weikard et al.

ANIMAL GENETICS (2017)

Review Genetics & Heredity

Long noncoding RNA (lincRNA), a new paradigm in gene expression control

Emre Deniz et al.

FUNCTIONAL & INTEGRATIVE GENOMICS (2017)

Article Biochemistry & Molecular Biology

Circulating microRNA as candidates for early embryonic viability in cattle

Ky G. Pohler et al.

MOLECULAR REPRODUCTION AND DEVELOPMENT (2017)

Review Immunology

Liver natural killer cells: subsets and roles in liver immunity

Hui Peng et al.

CELLULAR & MOLECULAR IMMUNOLOGY (2016)

Article Oncology

Circulating Beta-2 Microglobulin and Risk of Cancer: The Atherosclerosis Risk in Communities Study (ARIC)

Anna E. Prizment et al.

CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION (2016)

Review Cell Biology

Oxidative stress, microRNAs and cytosolic calcium homeostasis

Alessandra Magenta et al.

CELL CALCIUM (2016)

Review Biology

Quantification of liver fat: A comprehensive review

Evgin Goceri et al.

COMPUTERS IN BIOLOGY AND MEDICINE (2016)

Article Biochemistry & Molecular Biology

Systems genetics and genome-wide association approaches for analysis of feed intake, feed efficiency, and performance in beef cattle

M. H. A. Santana et al.

GENETICS AND MOLECULAR RESEARCH (2016)

Meeting Abstract Agriculture, Dairy & Animal Science

Transcriptome analysis of longissimus thoracis et lumborum from pigs divergent in residual feed intake.

J. Horodyska et al.

JOURNAL OF ANIMAL SCIENCE (2016)

Article Biotechnology & Applied Microbiology

Liver transcriptomic networks reveal main biological processes associated with feed efficiency in beef cattle

Pamela A. Alexandre et al.

BMC GENOMICS (2015)

Article Biotechnology & Applied Microbiology

Global liver gene expression differences in Nelore steers with divergent residual feed intake phenotypes

Polyana C. Tizioto et al.

BMC GENOMICS (2015)

Article Biochemistry & Molecular Biology

MiR-25 Protects Cardiomyocytes against Oxidative Damage by Targeting the Mitochondrial Calcium Uniporter

Lei Pan et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2015)

Article Biochemistry & Molecular Biology

Expression of genes related to mitochondrial function in Nellore cattle divergently ranked on residual feed intake

Larissa Fernanda Simielli Fonseca et al.

MOLECULAR BIOLOGY REPORTS (2015)

Article Biochemical Research Methods

HISAT: a fast spliced aligner with low memory requirements

Daehwan Kim et al.

NATURE METHODS (2015)

Review Agriculture, Dairy & Animal Science

A review of feed efficiency in swine: biology and application

John F. Patience et al.

JOURNAL OF ANIMAL SCIENCE AND BIOTECHNOLOGY (2015)

Article Medicine, General & Internal

The liver and the immune system

Jakab Lajos

ORVOSI HETILAP (2015)

Review Biochemistry & Molecular Biology

Ribosome biogenesis in skeletal development and the pathogenesis of skeletal disorders

Paul A. Trainor et al.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE (2014)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Genetics & Heredity

Identification of genomic regions associated with feed efficiency in Nelore cattle

Priscila S. N. de Oliveira et al.

BMC GENETICS (2014)

Article Biochemistry & Molecular Biology

Glia are critical for the neuropathology of complex I deficiency in Drosophila

Vijay R. Hegde et al.

HUMAN MOLECULAR GENETICS (2014)

Article Genetics & Heredity

Expression of microRNAs in bovine and human pre-implantation embryo culture media

Jenna Kropp et al.

FRONTIERS IN GENETICS (2014)

Article Biochemical Research Methods

Systematic classification of non-coding RNAs by epigenomic similarity

Mikhail G. Dozmorov et al.

BMC BIOINFORMATICS (2013)

Review Biochemistry & Molecular Biology

Current Status of Biomarkers for Prostate Cancer

Vicki M. Velonas et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2013)

Article Food Science & Technology

Meat quality of young Nellore bulls with low and high residual feed intake

K. Zorzi et al.

MEAT SCIENCE (2013)

Article Hematology

Genomic analysis of high-risk smoldering multiple myeloma

Lucia Lopez-Corral et al.

HAEMATOLOGICA-THE HEMATOLOGY JOURNAL (2012)

Article Multidisciplinary Sciences

Landscape of transcription in human cells

Sarah Djebali et al.

NATURE (2012)

Article Multidisciplinary Sciences

An integrated encyclopedia of DNA elements in the human genome

Ian Dunham et al.

NATURE (2012)

Article Agriculture, Multidisciplinary

Meta-analysis of genetic parameter estimates of residual feed intake and of its component traits in cattle

Ana Cecilia Del Claro et al.

PESQUISA AGROPECUARIA BRASILEIRA (2012)

Review Medicine, General & Internal

Liver regeneration in nonalcoholic fatty liver disease

Aldo Lagomarsino

MEDWAVE (2012)

Article Oncology

A prognostic multigene classifier for squamous cell carcinomas of the larynx

Valentina Mirisola et al.

CANCER LETTERS (2011)

Review Clinical Neurology

Proteomic research in psychiatry

Regina Taurines et al.

JOURNAL OF PSYCHOPHARMACOLOGY (2011)

Article Physiology

Gene expression profiling of the short-term adaptive response to acute caloric restriction in liver and adipose tissues of pigs differing in feed efficiency

Sender Lkhagvadorj et al.

AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY (2010)

Article Agriculture, Dairy & Animal Science

Molecular basis for residual feed intake in beef cattle

S. S. Moore et al.

JOURNAL OF ANIMAL SCIENCE (2009)

Article Agriculture, Dairy & Animal Science

Physiological basis for residual feed intake

R. M. Herd et al.

JOURNAL OF ANIMAL SCIENCE (2009)

Article Cell Biology

The NF-κB Family of Transcription Factors and Its Regulation

Andrea Oeckinghaus et al.

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2009)

Article Agriculture, Dairy & Animal Science

Genetic and phenotypic relationships of feed intake and measures of efficiency with growth and carcass merit of beef cattle

J. D. Nkrumah et al.

JOURNAL OF ANIMAL SCIENCE (2007)

Review Biochemistry & Molecular Biology

The MEK/ERK cascade: From signaling specificity to diverse functions

Yoav D. Shaul et al.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2007)

Article Biochemistry & Molecular Biology

Mitochondria, oxidative stress and cell death

Martin Ott et al.

APOPTOSIS (2007)

Review Biochemistry & Molecular Biology

Colorectal cancer and genetic alterations in the Wnt pathway

S. Segditsas et al.

ONCOGENE (2006)

Article Gastroenterology & Hepatology

The liver as an immunological organ

V Racanelli et al.

HEPATOLOGY (2006)

Article Gastroenterology & Hepatology

Adenosine monophosphate-activated protein kinase and nitric oxide in rat steatotic liver transplantation

E Carrasco-Chaumel et al.

JOURNAL OF HEPATOLOGY (2005)

Article Endocrinology & Metabolism

AMP-activated protein kinase and coordination of hepatic fatty acid metabolism of starved/carbohydrate-refed rats

MM Assifi et al.

AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM (2005)

Article Multidisciplinary Sciences

Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles

A Subramanian et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Review Agriculture, Dairy & Animal Science

Physiological and pathological adaptations in dairy cows that may increase susceptibility to periparturient diseases and disorders

JK Drackley et al.

ITALIAN JOURNAL OF ANIMAL SCIENCE (2005)

Article Biochemistry & Molecular Biology

Age-associated decline in mitochondrial respiration and electron transport in Drosophila melanogaster

M Ferguson et al.

BIOCHEMICAL JOURNAL (2005)

Article Agriculture, Dairy & Animal Science

Residual feed intake and body composition in young growing cattle

JA Basarab et al.

CANADIAN JOURNAL OF ANIMAL SCIENCE (2003)

Article Biochemistry & Molecular Biology

Glutathione (GSH) concentrations vary with the cell cycle in maturing hamster oocytes, zygotes, and pre-implantation stage embryos

KA Zuelke et al.

MOLECULAR REPRODUCTION AND DEVELOPMENT (2003)

Article Agriculture, Dairy & Animal Science

Association of mitochondrial function with feed efficiency within a single genetic line of male broilers

W Bottje et al.

POULTRY SCIENCE (2002)