4.7 Article

Generalisable long COVID subtypes: findings from the NIH N3C and RECOVER programmes

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Infectious Diseases

Clustering analysis reveals different profiles associating long-term post-COVID symptoms, COVID-19 symptoms at hospital admission and previous medical co-morbidities in previously hospitalized COVID-19 survivors

Cesar Fernandez-de-las-Penas et al.

Summary: By using cluster analysis on clinical data of COVID-19 survivors, three different subgroups were identified with distinct post-COVID symptoms and clinical characteristics. The study found that some patients experienced more long-term symptoms post-recovery, with greater limitations in daily activities, higher levels of anxiety and depression, and poorer sleep quality.

INFECTION (2023)

Review Infectious Diseases

A clinical case definition of post-COVID-19 condition by a Delphi consensus

Joan B. Soriano et al.

Summary: People with COVID-19 might experience long-term symptoms known as long COVID or long-haul COVID. The lack of a standardized definition hinders the understanding and treatment of this condition. In a WHO-led Delphi process, a consensus definition was developed, stating that post-COVID-19 condition occurs in individuals with a history of SARS-CoV-2 infection, with symptoms lasting for at least 2 months and impacting everyday functioning. This common framework provides a foundation for future studies and therapy.

LANCET INFECTIOUS DISEASES (2022)

Article Biology

Investigating phenotypes of pulmonary COVID-19 recovery: A longitudinal observational prospective multicenter trial

Thomas Sonnweber et al.

Summary: This study observed the respiratory and symptom recovery in COVID-19 patients during the follow-up period. The results showed that 49% of patients reported persistent symptoms at the 6-month follow-up. Structural lung abnormalities and impaired lung function were more common in severe cases. The study also found that early clinical indicators could predict the risk of incomplete pulmonary recovery.
Article Public, Environmental & Occupational Health

Positive Predictive Value of the ICD-10 Diagnosis Code for Long-COVID

Laerke Storgaard Duerlund et al.

Summary: The study examined the positive predictive value (PPV) of International Classification version 10 (ICD-10) diagnosis codes for long COVID-19 in a Danish Health registry. The overall PPV of diagnosis codes for long COVID-19 was high in the North Denmark Region and suitable for future registry-based studies. Caution is advised at the extremes of age and with secondary diagnosis codes.

CLINICAL EPIDEMIOLOGY (2022)

Article Multidisciplinary Sciences

Characteristics and impact of Long Covid: Findings from an online survey

Nida Ziauddeen et al.

Summary: Long Covid is a significant health concern with a wide range of symptoms, including fatigue, chest tightness, shortness of breath, headache, and cognitive dysfunction. It can lead to decreased work and daily life abilities.

PLOS ONE (2022)

Article Immunology

Identification of Distinct Long COVID Clinical Phenotypes Through Cluster Analysis of Self-Reported Symptoms

Grace Kenny et al.

Summary: The study identified three clusters of symptoms in long COVID patients, including predominantly pain symptoms, cardiovascular symptoms, and a cluster with fewer symptoms. Clusters 1 and 2 showed greater functional impairment, suggesting potential distinct underlying pathophysiologic mechanisms.

OPEN FORUM INFECTIOUS DISEASES (2022)

Letter Biotechnology & Applied Microbiology

The GA4GH Phenopacket schema defines a computable representation of clinical data

Julius O. B. Jacobsen et al.

NATURE BIOTECHNOLOGY (2022)

Article Biochemistry & Molecular Biology

The Human Phenotype Ontology in 2021

Sebastian Koehler et al.

Summary: The Human Phenotype Ontology (HPO) serves as a global standard for phenotype exchange, with recent major extensions in neurology, nephrology, immunology, pulmonology, and other fields. Efforts have been made to improve computational definitions of phenotypic abnormalities across HPO and multiple phenotype ontologies for animal disease models, benefiting software accuracy and cross-species phenotype matching. Recent initiatives include translating HPO into indigenous languages and advancing its use in electronic health record systems.

NUCLEIC ACIDS RESEARCH (2021)

Article Respiratory System

Persistent symptoms 1.5-6 months after COVID-19 in non-hospitalised subjects: a population-based cohort study

Knut Stavem et al.

Summary: The study assessed symptoms and their determinants 1.5-6 months after symptom onset in non-hospitalised subjects with confirmed COVID-19 until 1 June 2020. Findings showed that individuals reported fewer symptoms after 1.5-6 months compared to during the acute COVID-19 phase, with persistent symptoms being associated with the number of comorbidities and symptoms experienced during the acute phase.

THORAX (2021)

Article Medicine, General & Internal

100,000 Genomes Pilot on Rare-Disease Diagnosis in Health Care - Preliminary Report

Damian Smedley et al.

Summary: The pilot study, involving 4660 participants with rare diseases, provided actionable diagnoses and identified three newly implicated disease genes, offering a road map for the larger implementation of genome sequencing in the setting of a national health service.

NEW ENGLAND JOURNAL OF MEDICINE (2021)

Article Biochemistry & Molecular Biology

Attributes and predictors of long COVID

Carole H. Sudre et al.

Summary: Reports on long-lasting COVID-19 symptoms, known as 'long COVID', are increasing. Analysis of data from over 4,000 COVID-19 cases revealed that long COVID is more common in older individuals, those with higher body mass index, and females. Experiencing more than five symptoms in the first week of illness was associated with long COVID. A simple model showed promise in distinguishing between short and long COVID cases early in the disease.

NATURE MEDICINE (2021)

Article Mathematical & Computational Biology

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies

Rebecca Jackson et al.

Summary: Biological ontologies are used to organize and interpret data from experiments, but integrating multiple ontologies can lead to compatibility issues. The OBO Foundry aims to promote the development and sharing of ontologies through a set of principles. Researchers have improved ontology quality and interoperability by encoding principles as operational rules and implementing automated validation checks.

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2021)

Article Medicine, General & Internal

Incidence, co-occurrence, and evolution of long-COVID features: A 6-month retrospective cohort study of 273,618 survivors of COVID-19

Maxime Taquet et al.

Summary: This study investigated the incidence and co-occurrence of long-COVID features in COVID-19 survivors, with comparisons to influenza patients, using electronic health records data. The findings showed that long-COVID clinical features were more commonly reported after COVID-19 infection, and differences were associated with sex, age, and illness severity.

PLOS MEDICINE (2021)

Article Genetics & Heredity

Computational analysis of 10,860 phenotypic annotations in individuals with SCN2A-related disorders

Katherine Crawford et al.

Summary: Pathogenic variants in SCN2A lead to a range of neurodevelopmental phenotypes. By extracting and analyzing phenotypic data from literature using Human Phenotype Ontology terms, this study identified key associations between genetic variants, clinical features, and protein structure in SCN2A-related disorders. The findings highlight the importance of standardized language in enabling quantitative phenotype analysis and mapping the phenotypic landscape in detail to reveal genotype-phenotype correlations.

GENETICS IN MEDICINE (2021)

Article Medicine, General & Internal

Characterizing Long COVID: Deep Phenotype of a Complex Condition

Rachel R. Deer et al.

EBIOMEDICINE (2021)

Article Multidisciplinary Sciences

High-dimensional characterization of post-acute sequelae of COVID-19

Ziyad Al-Aly et al.

Summary: This study comprehensively describes the post-acute sequelae of COVID-19 using national healthcare databases, finding increased risk of death and use of health resources beyond the first 30 days of illness, as well as incident sequelae in various organ systems, increased use of therapeutic agents, and evidence of laboratory abnormalities. The findings show a risk gradient according to the severity of acute COVID-19 infection and highlight the burden of health loss experienced by patients who survive the acute phase.

NATURE (2021)

Review Biochemistry & Molecular Biology

Post-acute COVID-19 syndrome

Ani Nalbandian et al.

Summary: SARS-CoV-2 is responsible for the COVID-19 pandemic, causing global healthcare crises. Recovery from COVID-19 may lead to persistent symptoms and long-term complications, prompting the need for multidisciplinary care and follow-up for survivors.

NATURE MEDICINE (2021)

Article Physiology

A High Percentage of Patients Recovered From COVID-19 but Discharged With Abnormal Liver Function Tests

Qinyi Gan et al.

Summary: Liver function test abnormality is common in COVID-19 patients and more prevalent in severe cases. A significant percentage of patients still had abnormal liver functions at the time of discharge. Younger age, hypertension, and low lymphocyte counts were identified as independent risk factors for persistent abnormal liver functions during hospitalization.

FRONTIERS IN PHYSIOLOGY (2021)

Article Virology

Post-COVID syndrome: A single-center questionnaire study on 1007 participants recovered from COVID-19

Bircan Kayaaslan et al.

Summary: This study investigated the prevalence and characteristics of post-COVID syndrome among COVID-19 survivors, finding that 47.5% of patients had persistent symptoms, with fatigue, myalgia, and weight loss being the most common. Factors such as severe acute COVID-19, hospitalization, and comorbidities were identified as independent factors for the development of persistent symptoms.

JOURNAL OF MEDICAL VIROLOGY (2021)

News Item Multidisciplinary Sciences

FOUR KEY QUESTIONS ABOUT LONG COVID

Michael Marshall

Summary: Scientists are gaining insights into the long-term effects of SARS-CoV-2 on some infected individuals, but many mysteries surrounding this issue remain unsolved.

NATURE (2021)

Article Multidisciplinary Sciences

Altered platelet and coagulation function in moderate-to-severe COVID-19

Rustem I. Litvinov et al.

Summary: In COVID-19 patients, coagulopathies mainly present as hypercoagulability, directly correlating with systemic inflammation and disease severity. Hindered clot contraction may increase the risk of bleeding, with associations found between elevated levels of C-reactive protein and antiphospholipid antibodies in most cases.

SCIENTIFIC REPORTS (2021)

Article Multidisciplinary Sciences

Clinical characterization of dysautonomia in long COVID-19 patients

Nicolas Barizien et al.

Summary: Heart rate variability assessment in long COVID-19 patients revealed signs of autonomic dysregulation, suggesting a potential explanation for persistent symptoms in these individuals.

SCIENTIFIC REPORTS (2021)

Review Infectious Diseases

Long COVID or post-COVID-19 syndrome: putative pathophysiology, risk factors, and treatments

Shin Jie Yong

Summary: Long COVID or post-COVID-19 syndrome is a poorly understood condition that affects survivors with symptoms like fatigue, dyspnoea, cognitive impairments, and more. The pathophysiology, risk factors, and treatments are still lacking in literature, but potential treatments may include rehabilitation training and repurposed drugs from similar conditions. Further research is needed to substantiate risk factors and treatment options.

INFECTIOUS DISEASES (2021)

Article Medicine, General & Internal

Elevations in Liver Transaminases in COVID-19: (How) Are They Related?

Henrique Pott-Junior et al.

Summary: Liver transaminase abnormalities in COVID-19 patients are directly related to disease severity and inflammatory parameters. The study suggests that liver transaminases can serve as a complementary marker for disease severity in COVID-19 patients.

FRONTIERS IN MEDICINE (2021)

Review Public, Environmental & Occupational Health

Characterising long COVID: a living systematic review

Melina Michelen et al.

Summary: Long COVID is a complex condition with prolonged and heterogeneous symptoms, including weakness, general malaise, fatigue, concentration impairment, and breathlessness. Approximately 37% of patients reported reduced quality of life, and 26% of studies presented evidence of reduced pulmonary function. There is an urgent need for further studies to explore the etiology, risk factors, and biomarkers of long COVID in different populations and settings.

BMJ GLOBAL HEALTH (2021)

Article Medicine, General & Internal

Characterizing long COVID in an international cohort: 7 months of symptoms and their impact

Hannah E. Davis et al.

Summary: Patients with Long COVID report prolonged, multisystem involvement and significant disability. By seven months, many patients have not yet recovered (mainly from systemic and neurological/cognitive symptoms), have not returned to previous levels of work, and continue to experience significant symptom burden.

ECLINICALMEDICINE (2021)

Article Endocrinology & Metabolism

Long COVID: An overview

A. V. Raveendran et al.

Summary: Long COVID refers to the persistence of symptoms in individuals who have recovered from SARS-CoV-2 infection, possibly related to organ damage, post viral syndrome, etc. Clinical evaluation should focus on identifying the pathophysiology and appropriate remedial measures.

DIABETES & METABOLIC SYNDROME-CLINICAL RESEARCH & REVIEWS (2021)

Review Endocrinology & Metabolism

Hypocalcemia is associated with severe COVID-19: A systematic review and meta-analysis

Januar Wibawa Martha et al.

Summary: The meta-analysis showed that hypocalcemia in COVID-19 patients is associated with poor outcomes, with a higher post-test probability in patients with hypocalcemia compared to those without.

DIABETES & METABOLIC SYNDROME-CLINICAL RESEARCH & REVIEWS (2021)

Article Computer Science, Information Systems

The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment

Melissa A. Haendel et al.

Summary: N3C is an open science community focused on analyzing patient-level data from multiple centers to address the challenges posed by COVID-19. By overcoming technical, regulatory, policy, and governance barriers, N3C has successfully established a secure data enclave for efficient, transparent, and reproducible collaborative analytics.

JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION (2021)

Article Genetics & Heredity

Interpretable Clinical Genomics with a Likelihood Ratio Paradigm

Peter N. Robinson et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2020)

Letter Medical Laboratory Technology

Hyperferritinemia in critically ill COVID-19 patients - Is ferritin the product of inflammation or a pathogenic mediator?

Jenifer Gomez-Pastora et al.

CLINICA CHIMICA ACTA (2020)

Article Computer Science, Artificial Intelligence

Evaluation and selection of clustering methods using a hybrid group MCDM

Sasan Barak et al.

EXPERT SYSTEMS WITH APPLICATIONS (2019)

Article Psychology, Multidisciplinary

Assessing the Robustness of Cluster Solutions Obtained From Sparse Count Matrices

Kathleen M. Gates et al.

PSYCHOLOGICAL METHODS (2019)

Article Biochemistry & Molecular Biology

The Human Phenotype Ontology in 2017

Sebastian Koehler et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Genetics & Heredity

The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease

Tudor Groza et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2015)

Article Computer Science, Information Systems

Feasibility and utility of applications of the common data model to multiple, disparate observational health databases

Erica A. Voss et al.

JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION (2015)

Article Biochemical Research Methods

Phenolyzer: phenotype-based prioritization of candidate genes for human diseases

Hui Yang et al.

NATURE METHODS (2015)

Article Social Sciences, Mathematical Methods

Nonparametric pairwise multiple comparisons in independent groups using Dunn's test

Alexis Dinno

STATA JOURNAL (2015)

Article Biochemistry & Molecular Biology

Improved exome prioritization of disease genes through cross-species phenotype comparison

Peter N. Robinson et al.

GENOME RESEARCH (2014)

Article Computer Science, Software Engineering

UpSet: Visualization of Intersecting Sets

Alexander Lex et al.

IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS (2014)

Article Biochemistry & Molecular Biology

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data

Sebastian Koehler et al.

NUCLEIC ACIDS RESEARCH (2014)

Review Genetics & Heredity

Phenotype Ontologies and Cross-Species Analysis for Translational Research

Peter N. Robinson et al.

PLOS GENETICS (2014)

Review Genetics & Heredity

The Human Phenotype Ontology

P. N. Robinson et al.

CLINICAL GENETICS (2010)

Article Genetics & Heredity

Clinical Diagnostics in Human Genetics with Semantic Similarity Searches in Ontologies

Sebastian Koehler et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2009)

Review Biochemical Research Methods

Semantic Similarity in Biomedical Ontologies

Catia Pesquita et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Article Genetics & Heredity

The Human Phenotype Ontology: A Tool for Annotating and Analyzing Human Hereditary Disease

Peter N. Robinson et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2008)

Article Statistics & Probability

Dissolution point and isolation robustness: Robustness criteria for general cluster analysis methods

Christian Hennig

JOURNAL OF MULTIVARIATE ANALYSIS (2008)

Review Mathematics, Interdisciplinary Applications

K-means clustering:: A half-century synthesis

Douglas Steinley

BRITISH JOURNAL OF MATHEMATICAL & STATISTICAL PSYCHOLOGY (2006)

Article Statistics & Probability

An algorithm for a letter-based representation of all-pairwise comparisons

HP Piepho

JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS (2004)