相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Critical Assessment of Metagenome Interpretation: the second round of challenges
Fernando Meyer et al.
NATURE METHODS (2022)
LMAS: evaluating metagenomic short de novo assembly methods through defined communities
Catarina Ines Mendes et al.
GIGASCIENCE (2022)
Tutorial: assessing metagenomics software with the CAMI benchmarking toolkit
Fernando Meyer et al.
NATURE PROTOCOLS (2021)
New approaches for metagenome assembly with short reads
Martin Ayling et al.
BRIEFINGS IN BIOINFORMATICS (2020)
GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations
Nancy Manchanda et al.
BMC GENOMICS (2020)
BlobToolKit - Interactive Quality Assessment of Genome Assemblies
Richard Challis et al.
G3-GENES GENOMES GENETICS (2020)
Developing standards for the microbiome field
Gregory C. A. Amos et al.
MICROBIOME (2020)
Simulating Illumina metagenomic data with InSilicoSeq
Hadrien Gourle et al.
BIOINFORMATICS (2019)
CAMISIM: simulating metagenomes and microbial communities
Adrian Fritz et al.
MICROBIOME (2019)
Ultra-deep, long-read nanopore sequencing of mock microbial community standards
Samuel M. Nicholls et al.
GIGASCIENCE (2019)
Scalable Genome Assembly through Parallel de Bruijn Graph Construction for Multiple k-mers
Kanak Mahadik et al.
SCIENTIFIC REPORTS (2019)
Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
Volkan Sevim et al.
SCIENTIFIC DATA (2019)
Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes
Nathan D. Olson et al.
BRIEFINGS IN BIOINFORMATICS (2019)
Complete Genome Sequence of a Pseudomonas aeruginosa Isolate from a Kidney Stone
Genevieve Johnson et al.
MICROBIOLOGY RESOURCE ANNOUNCEMENTS (2019)
Minimap2: pairwise alignment for nucleotide sequences
Heng Li
BIOINFORMATICS (2018)
Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens
Natacha Couto et al.
SCIENTIFIC REPORTS (2018)
SKESA: strategic k-mer extension for scrupulous assemblies
Alexandre Souvorov et al.
GENOME BIOLOGY (2018)
metaSPAdes: a new versatile metagenomic assembler
Sergey Nurk et al.
GENOME RESEARCH (2017)
ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter
Shaun D. Jackman et al.
GENOME RESEARCH (2017)
Nextflow enables reproducible computational workflows
Paolo Di Tommaso et al.
NATURE BIOTECHNOLOGY (2017)
Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software
Alexander Sczyrba et al.
NATURE METHODS (2017)
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
Ryan R. Wick et al.
PLOS COMPUTATIONAL BIOLOGY (2017)
MetaQUAST: evaluation of metagenome assemblies
Alla Mikheenko et al.
BIOINFORMATICS (2016)
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
Dinghua Li et al.
BIOINFORMATICS (2015)
Space-efficient and exact de Bruijn graph representation based on a Bloom filter
Rayan Chikhi et al.
ALGORITHMS FOR MOLECULAR BIOLOGY (2013)
QUAST: quality assessment tool for genome assemblies
Alexey Gurevich et al.
BIOINFORMATICS (2013)
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
Keith R. Bradnam et al.
GIGASCIENCE (2013)
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
Yu Peng et al.
BIOINFORMATICS (2012)
Current opportunities and challenges in microbial metagenome analysis-a bioinformatic perspective
Hanno Teeling et al.
BRIEFINGS IN BIOINFORMATICS (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Genome assembly quality: Assessment and improvement using the neutral indel model
Stephen Meader et al.
GENOME RESEARCH (2010)
分享论文
