相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Mapping transcriptomic vector fields of single cells
Xiaojie Qiu et al.
CELL (2022)
Non-genetic determinants of malignant clonal fitness at single-cell resolution
Katie A. Fennell et al.
NATURE (2022)
CoSpar identifies early cell fate biases from single-cell transcriptomic and lineage information
Shou-Wen Wang et al.
NATURE BIOTECHNOLOGY (2022)
Single-cell profiling of proteins and chromatin accessibility using PHAGE-ATAC
Evgenij Fiskin et al.
NATURE BIOTECHNOLOGY (2022)
Lineage recording in human cerebral organoids
Zhisong He et al.
NATURE METHODS (2022)
CellRank for directed single-cell fate mapping
Marius Lange et al.
NATURE METHODS (2022)
Mechanical regulation of early vertebrate embryogenesis
Manon Valet et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2022)
Clonal dynamics of haematopoiesis across the human lifespan
Emily Mitchell et al.
NATURE (2022)
DIALOGUE maps multicellular programs in tissue from single-cell or spatial transcriptomics data
Livnat Jerby-Arnon et al.
NATURE BIOTECHNOLOGY (2022)
What is a cell type and how to define it?
Hongkui Zeng
CELL (2022)
The emerging landscape of spatial profiling technologies
Jeffrey R. Moffitt et al.
NATURE REVIEWS GENETICS (2022)
spliceJAC: transition genes and state-specific gene regulation from single-cell transcriptome data
Federico Bocci et al.
MOLECULAR SYSTEMS BIOLOGY (2022)
Towards reliable quantification of cell state velocities
Valerie Marot-Lassauzaie et al.
PLOS COMPUTATIONAL BIOLOGY (2022)
Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling
Caleb A. Lareau et al.
NATURE BIOTECHNOLOGY (2021)
Active turnover of DNA methylation during cell fate decisions
Aled Parry et al.
NATURE REVIEWS GENETICS (2021)
Cell fate specification and differentiation in the adult mammalian intestine
Joep Beumer et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2021)
A comprehensive library of human transcription factors for cell fate engineering
Alex H. M. Ng et al.
NATURE BIOTECHNOLOGY (2021)
Single-cell lineages reveal the rates, routes, and drivers of metastasis in cancer xenografts
Jeffrey J. Quinn et al.
SCIENCE (2021)
Mitochondria as Signaling Organelles Control Mammalian Stem Cell Fate
Ram Prosad Chakrabarty et al.
CELL STEM CELL (2021)
A single-embryo, single-cell time-resolved model for mouse gastrulation
Markus Mittnenzweig et al.
CELL (2021)
Clonal multi-omics reveals Bcor as a negative regulator of emergency dendritic cell development
Luyi Tian et al.
IMMUNITY (2021)
Modelling human blastocysts by reprogramming fibroblasts into iBlastoids
Xiaodong Liu et al.
NATURE (2021)
Blastocyst-like structures generated from human pluripotent stem cells
Leqian Yu et al.
NATURE (2021)
Single-cell CUT&Tag analysis of chromatin modifications in differentiation and tumor progression
Steven J. Wu et al.
NATURE BIOTECHNOLOGY (2021)
Single-cell CUT&Tag profiles histone modifications and transcription factors in complex tissues
Marek Bartosovic et al.
NATURE BIOTECHNOLOGY (2021)
Imaging cell lineage with a synthetic digital recording system
Ke-Huan K. Chow et al.
SCIENCE (2021)
Simultaneous trimodal single-cell measurement of transcripts, epitopes, and chromatin accessibility using TEA-seq
Elliott Swanson et al.
ELIFE (2021)
Scalable, multimodal profiling of chromatin accessibility, gene expression and protein levels in single cells
Eleni P. Mimitou et al.
NATURE BIOTECHNOLOGY (2021)
Cell fate coordinates mechano-osmotic forces in intestinal crypt formation
Qiutan Yang et al.
NATURE CELL BIOLOGY (2021)
Lineage tracing on transcriptional landscapes links state to fate during differentiation
Caleb Weinreb et al.
SCIENCE (2020)
Lineage tracing meets single-cell omics: opportunities and challenges
Daniel E. Wagner et al.
NATURE REVIEWS GENETICS (2020)
Mechanisms of human embryo development: from cell fate to tissue shape and back
Marta N. Shahbazi
DEVELOPMENT (2020)
Human Embryogenesis: A Comparative Perspective
Claudia Gerri et al.
Annual Review of Cell and Developmental Biology (2020)
Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin
Sai Ma et al.
CELL (2020)
Unraveling Hematopoiesis through the Lens of Genomics
L. Alexander Liggett et al.
CELL (2020)
Single-molecule imaging of transcription dynamics in somatic stem cells
Justin C. Wheat et al.
NATURE (2020)
Single-cell lineage tracing unveils a role for TCF15 in haematopoiesis
Alejo E. Rodriguez-Fraticelli et al.
NATURE (2020)
A new lymphoid-primed progenitor marked byDach1downregulation identified with single cell multi-omics
Daniela Amann-Zalcenstein et al.
NATURE IMMUNOLOGY (2020)
Understanding cell fate control by continuous single-cell quantification
Dirk Loeffler et al.
BLOOD (2019)
Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming (vol 176, pg 928, 2019)
Geoffrey Schiebinger et al.
CELL (2019)
Lineage Tracing in Humans Enabled by Mitochondrial Mutations and Single-Cell Genomics
Leif S. Ludwig et al.
CELL (2019)
Transcription factors and 3D genome conformation in cell-fate decisions
Ralph Stadhouders et al.
NATURE (2019)
A comparison of single-cell trajectory inference methods
Wouter Saelens et al.
NATURE BIOTECHNOLOGY (2019)
Inferring population dynamics from single-cell RNA-sequencing time series data
David S. Fischer et al.
NATURE BIOTECHNOLOGY (2019)
Concepts and limitations for learning developmental trajectories from single cell genomics
Sophie Tritschler et al.
DEVELOPMENT (2019)
The genetics of human hematopoiesis and its disruption in disease
Erik L. Bao et al.
EMBO MOLECULAR MEDICINE (2019)
Hydraulic control of mammalian embryo size and cell fate
Chii Jou Chan et al.
NATURE (2019)
Droplet-based combinatorial indexing for massive-scale single-cell chromatin accessibility
Caleb A. Lareau et al.
NATURE BIOTECHNOLOGY (2019)
High-throughput single-cell ChIP-seq identifies heterogeneity of chromatin states in breast cancer
Kevin Grosselin et al.
NATURE GENETICS (2019)
Spatiotemporal structure of cell fate decisions in murine neural crest
Ruslan Soldatov et al.
SCIENCE (2019)
Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion
Ansuman T. Satpathy et al.
NATURE BIOTECHNOLOGY (2019)
A lineage-resolved molecular atlas of C. elegans embryogenesis at single-cell resolution
Jonathan S. Packer et al.
SCIENCE (2019)
Mapping human cell phenotypes to genotypes with single-cell genomics
J. Gray Camp et al.
SCIENCE (2019)
Unravelling cellular relationships during development and regeneration using genetic lineage tracing
Chloe S. Baron et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2019)
An ultra high-throughput method for single-cell joint analysis of open chromatin and transcriptome
Chenxu Zhu et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2019)
Ribosome Levels Selectively Regulate Translation and Lineage Commitment in Human Hematopoiesis
Rajiv K. Khajuria et al.
CELL (2018)
Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation
Jason D. Buenrostro et al.
CELL (2018)
Causes and Consequences of Hematopoietic Stem Cell Heterogeneity
Simon Haas et al.
CELL STEM CELL (2018)
Clonal analysis of lineage fate in native haematopoiesis
Alejo E. Rodriguez-Fraticelli et al.
NATURE (2018)
Simultaneous lineage tracing and cell-type identification using CRISPR-Cas9-induced genetic scars
Bastiaan Spanjaard et al.
NATURE BIOTECHNOLOGY (2018)
Fundamental limits on dynamic inference from single-cell snapshots
Caleb Weinreb et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis
Jeffrey A. Farrell et al.
SCIENCE (2018)
Lineage marker synchrony in hematopoietic genealogies refutes the PU.1/GATA1 toggle switch paradigm
Michael K. Strasser et al.
NATURE COMMUNICATIONS (2018)
RNA velocity of single cells
Gioele La Manno et al.
NATURE (2018)
Hierarchically related lineage-restricted fates of multipotent haematopoietic stem cells
Joana Carrelha et al.
NATURE (2018)
Population dynamics of normal human blood inferred from somatic mutations
Henry Lee-Six et al.
NATURE (2018)
Dynamics of genetically engineered hematopoietic stem and progenitor cells after autologous transplantation in humans
Serena Scala et al.
NATURE MEDICINE (2018)
Joint profiling of chromatin accessibility and gene expression in thousands of single cells
Junyue Cao et al.
SCIENCE (2018)
Single-cell analysis uncovers convergence of cell identities during axolotl limb regeneration
Tobias Gerber et al.
SCIENCE (2018)
Limb development: a paradigm of gene regulation
Florence Petit et al.
NATURE REVIEWS GENETICS (2017)
Parameter identifiability analysis and visualization in large-scale kinetic models of biosystems
Attila Gabor et al.
BMC SYSTEMS BIOLOGY (2017)
Epigenetic Memory Underlies Cell-Autonomous Heterogeneous Behavior of Hematopoietic Stem Cells
Vionnie W. C. Yu et al.
CELL (2016)
Early myeloid lineage choice is not initiated by random PU.1 to GATA1 protein ratios
Philipp S. Hoppe et al.
NATURE (2016)
Defining the Minimal Factors Required for Erythropoiesis through Direct Lineage Conversion
Sandra Capellera-Garcia et al.
CELL REPORTS (2016)
Fundamental properties of unperturbed haematopoiesis from stem cells in vivo
Katrin Busch et al.
NATURE (2015)
Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state
Assaf Rotem et al.
NATURE BIOTECHNOLOGY (2015)
Cell Fate Decision Making through Oriented Cell Division
Evan B. Dewey et al.
JOURNAL OF DEVELOPMENTAL BIOLOGY (2015)
Classification of transient behaviours in a time-dependent toggle switch model
Berta Verd et al.
BMC SYSTEMS BIOLOGY (2014)
Clonal dynamics of native haematopoiesis
Jianlong Sun et al.
NATURE (2014)
Altered translation of GATA1 in Diamond-Blackfan anemia
Leif S. Ludwig et al.
NATURE MEDICINE (2014)
Exome sequencing identifies GATA1 mutations resulting in Diamond-Blackfan anemia
Vijay G. Sankaran et al.
JOURNAL OF CLINICAL INVESTIGATION (2012)
Transcription factors: from enhancer binding to developmental control
Francois Spitz et al.
NATURE REVIEWS GENETICS (2012)
Hematopoiesis: An evolving paradigm for stem cell biology
Stuart H. Orkin et al.
CELL (2008)
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
BE Bernstein et al.
CELL (2006)
The chemical Langevin equation
DT Gillespie
JOURNAL OF CHEMICAL PHYSICS (2000)