4.6 Article

The complex role of transcription factor GAGA in germline death during Drosophila spermatogenesis: transcriptomic and bioinformatic analyses

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Cell Biology

Analysis of insect nuclear small heat shock proteins and interacting proteins

Mohamed Taha Moutaoufik et al.

Summary: Through sequence analysis, 56 additional insect sHsps with conserved nuclear localization signals were identified. The exact role of nuclear sHsps remains unknown, but DmHsp27 may have roles in molecular chaperoning and other nuclear processes such as chromatin remodeling and transcription. Identification of DmHsp27 interactors could provide insights into the cellular and molecular functions of this nuclear chaperone.

CELL STRESS & CHAPERONES (2021)

Article Agriculture, Multidisciplinary

Lack of GAGA protein in Trl mutants causes massive cell death in Drosophila spermatogenesis and oogenesis

N. Dorogova et al.

Summary: The lack of GAF protein in Trl mutants leads to significant germ cell death in both male and female Drosophila, with different manifestations depending on sex. Trl mutations induce germ cell death through autophagy in males, which is not typical in Drosophila spermatogenesis and has not been described before.

VAVILOVSKII ZHURNAL GENETIKI I SELEKTSII (2021)

Article Cell Biology

Pioneer-like factor GAF cooperates with PBAP (SWI/SNF) and NURF (ISWI) to regulate transcription

Julius Judd et al.

Summary: The study reveals that the Drosophila GAGA factor (GAF) works with chromatin remodelers to recruit Pol II and induce a paused state, as well as facilitate Pol II transition to productive elongation.

GENES & DEVELOPMENT (2021)

Review Agriculture, Dairy & Animal Science

Long Non-Coding RNAs in Insects

Chhavi Choudhary et al.

Summary: Long-non-coding RNAs (lncRNAs) are transcripts of more than 200 nucleotides without protein-coding potential, and while their functions in insects are not well understood, they are believed to play important roles in insect development and regulation. Studies have shown that lncRNAs are involved in various aspects of insect biology, and their regulatory roles are gaining attention in both animals and plants.

ANIMALS (2021)

Article Biochemical Research Methods

IRIS-EDA: An integrated RNA-Seq interpretation system for gene expression data analysis

Brandon Monier et al.

PLOS COMPUTATIONAL BIOLOGY (2019)

Review Biochemistry & Molecular Biology

Insights into the Functions of LncRNAs in Drosophila

Keqin Li et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)

Article Genetics & Heredity

Investigation of the Developmental Requirements of Drosophila HP1 and Insulator Protein Partner, HIPP1

Steve E. Glenn et al.

G3-GENES GENOMES GENETICS (2019)

Review Biochemistry & Molecular Biology

Molecular mechanisms of cell death: recommendations of the Nomenclature Committee on Cell Death 2018

Lorenzo Galluzzi et al.

CELL DEATH AND DIFFERENTIATION (2018)

Review Genetics & Heredity

Molecular mechanisms driving transcriptional stress responses

Anniina Vihervaara et al.

NATURE REVIEWS GENETICS (2018)

Article Biotechnology & Applied Microbiology

Analysis of Drosophila melanogaster testis transcriptome

Viktor Vedelek et al.

BMC GENOMICS (2018)

Review Genetics & Heredity

Long noncoding RNA (lincRNA), a new paradigm in gene expression control

Emre Deniz et al.

FUNCTIONAL & INTEGRATIVE GENOMICS (2017)

Article Genetics & Heredity

p53-dependent programmed necrosis controls germ cell homeostasis during spermatogenesis

Francesco Napoletano et al.

PLOS GENETICS (2017)

Article Multidisciplinary Sciences

Repression of Abd-B by Polycomb is critical for cell identity maintenance in adult Drosophila testis

Shuo Zhang et al.

SCIENTIFIC REPORTS (2017)

Article Biochemistry & Molecular Biology

Critical roles of long noncoding RNAs in Drosophila spermatogenesis

Kejia Wen et al.

GENOME RESEARCH (2016)

Article Biochemistry & Molecular Biology

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

Maxim V. Kuleshov et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Developmental Biology

GAGA Protein is Essential for Male Germ Cell Development in Drosophila

Natalia V. Dorogova et al.

GENESIS (2014)

Article Biochemistry & Molecular Biology

Comparison of D. melanogaster and C. elegans developmental stages, tissues, and cells by modENCODE RNA-seq data

Jingyi Jessica Li et al.

GENOME RESEARCH (2014)

Article Multidisciplinary Sciences

Diversity and dynamics of the Drosophila transcriptome

James B. Brown et al.

NATURE (2014)

Article Biochemical Research Methods

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin et al.

BIOINFORMATICS (2013)

Article Biochemical Research Methods

Scotty: a web tool for designing RNA-Seq experiments to measure differential gene expression

Michele A. Busby et al.

BIOINFORMATICS (2013)

Article Biochemical Research Methods

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

Edward Y. Chen et al.

BMC BIOINFORMATICS (2013)

Article Cell Biology

Regulation and Function of Autophagy during Cell Survival and Cell Death

Gautam Das et al.

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2012)

Review Biochemistry & Molecular Biology

ARTS, the unusual septin: structural and functional aspects

Yael Mandel-Gutfreund et al.

BIOLOGICAL CHEMISTRY (2011)

Article Biology

Analysis and recognition of the GAGA transcription factor binding sites in Drosophila genes

E. S. Omelina et al.

COMPUTATIONAL BIOLOGY AND CHEMISTRY (2011)

Article Biotechnology & Applied Microbiology

Differential expression analysis for sequence count data

Simon Anders et al.

GENOME BIOLOGY (2010)

Article Biochemical Research Methods

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

Eran Eden et al.

BMC BIOINFORMATICS (2009)

Article Developmental Biology

Drosophila retinal pigment cell death is regulated in a position-dependent manner by a cell memory gene

Nicolas Dos-Santos et al.

INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY (2008)

Article Biochemical Research Methods

Discovering motifs in ranked lists of DNA sequences

Eran Eden et al.

PLOS COMPUTATIONAL BIOLOGY (2007)

Review Biochemistry & Molecular Biology

miRNAs and apoptosis: RNAs to die for

M. Jovanovic et al.

ONCOGENE (2006)

Article Multidisciplinary Sciences

Interaction between the GAGA factor and Mod(mdg4) proteins promotes insulator bypass in Drosophila

L Melnikova et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biochemistry & Molecular Biology

The Drosophila MicroRNA mir-14 suppresses cell death and is required for normal fat metabolism

PZ Xu et al.

CURRENT BIOLOGY (2003)

Article Multidisciplinary Sciences

Genomewide analysis of Drosophila GAGA factor target genes reveals context-dependent DNA binding

B van Steensel et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Neurosciences

Rpr- and hid-driven cell death in Drosophila photoreceptors

CD Hsu et al.

VISION RESEARCH (2002)

Article Biochemistry & Molecular Biology

Interactions between the Su(Hw) and Mod(mdg4) proteins required for gypsy insulator function

D Ghosh et al.

EMBO JOURNAL (2001)