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Eric W. Sayers et al.
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A. Gaballa et al.
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Danielle M. Tack et al.
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Lixin Lou et al.
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Fanta D. Gutema et al.
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Awa Diop et al.
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Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
Andrew Rambaut et al.
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A genomic overview of the population structure of Salmonella
Nabil-Fareed Alikhan et al.
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Jay Worley et al.
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SKESA: strategic k-mer extension for scrupulous assemblies
Alexandre Souvorov et al.
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TIPDATINGBEAST: an R package to assist the implementation of phylogenetic tip-dating tests using BEAST
Adrien Rieux et al.
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Jasna Kovac et al.
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Adam L. Bazinet
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bModelTest: Bayesian phylogenetic site model averaging and model comparison
Remco R. Bouckaert et al.
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PHASTER: a better, faster version of the PHAST phage search tool
David Arndt et al.
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NCBI prokaryotic genome annotation pipeline
Tatiana Tatusova et al.
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Jana Kamanova et al.
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The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies
Catherine E. Yoshida et al.
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Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen)
Andrew Rambaut et al.
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SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments
Andrew J. Page et al.
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Rapid scoring of genes in microbial pan-genome-wide association studies with Scoary
Ola Brynildsrud et al.
GENOME BIOLOGY (2016)
Pangenome analysis of Bifidobacterium longum and site-directed mutagenesis through by-pass of restriction-modification systems
A. O'Callaghan et al.
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The Performance of the Date-Randomization Test in Phylogenetic Analyses of Time-Structured Virus Data
Sebastian Duchene et al.
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Shengyong Mao et al.
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Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Nicholas J. Croucher et al.
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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
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Genomic characterization of Salmonella Cerro ST367, an emerging Salmonella subtype in cattle in the United States
Lorraine D. Rodriguez-Rivera et al.
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Supplement 2008-2010 (no. 48) to the White-Kauffmann-Le Minor scheme
Sylvie Issenhuth-Jeanjean et al.
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Casper Schroll et al.
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Sean-Paul Nuccio et al.
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QUAST: quality assessment tool for genome assemblies
Alexey Gurevich et al.
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Extreme genome reduction in symbiotic bacteria
John P. McCutcheon et al.
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Polyamines Are Required for Virulence in Salmonella enterica Serovar Typhimurium
Lotte Jelsbak et al.
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Sensing and Adaptation to Low pH Mediated by Inducible Amino Acid Decarboxylases in Salmonella
Julie P. M. Viala et al.
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Probing the pan-genome of Listeria monocytogenes: new insights into intraspecific niche expansion and genomic diversification
Xiangyu Deng et al.
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Kevin J. Cummings et al.
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Modulation of cellular function by polyamines
Kazuei Iarashi et al.
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FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price et al.
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Christiam Camacho et al.
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Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi
Kathryn E. Holt et al.
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Microbial comparative pan-genomics using binomial mixture models
Lars Snipen et al.
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Comparative genomics: the bacterial pan-genome
Herve Tettelin et al.
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Nicholas R. Thomson et al.
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The pangenome structure of Escherichia coli:: Comparative genomic analysis of E-coli commensal and pathogenic isolates
David A. Rasko et al.
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Timothy F. Jones et al.
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Reconstructing the ancestor of Mycobacterium leprae:: The dynamics of gene loss and genome reduction
Laura Gomez-Valero et al.
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The inflammation-associated Salmonella SopA is a HECT-like E3 ubiquitin ligase
Ying Zhang et al.
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SipA, SopA, SopB, SopD, and SopE2 contribute to Salmonella enterica serotype Typhimurium invasion of epithelial cells
M Raffatellu et al.
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Microbial minimalism: Genome reduction in bacterial pathogens
NA Moran
CELL (2002)
Genome sequence of Yersinia pestis, the causative agent of plague
J Parkhill et al.
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The alternative electron acceptor tetrathionate supports B12-dependent anaerobic growth of Salmonella enterica serovar typhimurium on ethanolamine or 1,2-propanediol
M Price-Carter et al.
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The secreted effector protein of Salmonella dublin, SopA, is translocated into eukaryotic cells and influences the induction of enteritis
MW Wood et al.
CELLULAR MICROBIOLOGY (2000)