相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Phylogeographic structure and historical demography of tarakihi (Nemadactylus macropterus) and king tarakihi (Nemadactylus n.sp.) in New Zealand
Yvan Papa et al.
NEW ZEALAND JOURNAL OF MARINE AND FRESHWATER RESEARCH (2022)
Genomic Stock Structure of the Marine Teleost Tarakihi (Nemadactylus macropterus) Provides Evidence of Potential Fine-Scale Adaptation and a Temperature-Associated Cline Amid Panmixia
Yvan Papa et al.
FRONTIERS IN ECOLOGY AND EVOLUTION (2022)
De novo assemblies ofLuffa acutangulaandLuffa cylindricagenomes reveal an expansion associated with substantial accumulation of transposable elements
Wirulda Pootakham et al.
MOLECULAR ECOLOGY RESOURCES (2021)
Genetic stock structure of New Zealand fish and the use of genomics in fisheries management: an overview and outlook
Yvan Papa et al.
NEW ZEALAND JOURNAL OF ZOOLOGY (2021)
Chromosome-level genome assembly for the largemouth bass Micropterus salmoides provides insights into adaptation to fresh and brackish water
Chengfei Sun et al.
MOLECULAR ECOLOGY RESOURCES (2021)
The changing face of genome assemblies: Guidance on achieving high-quality reference genomes
Annabel Whibley et al.
MOLECULAR ECOLOGY RESOURCES (2021)
Global tissue transcriptomic analysis to improve genome annotation and unravel skin pigmentation in goldfish
Wu Gan et al.
SCIENTIFIC REPORTS (2021)
Charting a course for genetic diversity in the UN Decade of Ocean Science
Alex Innes Thomson et al.
EVOLUTIONARY APPLICATIONS (2021)
Chromosome-level assembly of southern catfish (silurus meridionalis) provides insights into visual adaptation to nocturnal and benthic lifestyles
Shuqing Zheng et al.
MOLECULAR ECOLOGY RESOURCES (2021)
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm
Haoyu Cheng et al.
NATURE METHODS (2021)
Genome-Wide Integrated Analysis Revealed Functions of lncRNA-miRNA-mRNA Interaction in Growth of Intermuscular Bones in Megalobrama amblycephala
Yulong Chen et al.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY (2021)
Characterization of a Y-specific duplication/insertion of the anti-Mullerian hormone type II receptor gene based on a chromosome-scale genome assembly of yellow perch, Perca flavescens
Romain Feron et al.
MOLECULAR ECOLOGY RESOURCES (2020)
High-Quality Genome Assembly and Annotation of the Big-Eye Mandarin Fish (Siniperca knerii)
Liang Lu et al.
G3-GENES GENOMES GENETICS (2020)
Genome Sequence of the Euryhaline Javafish Medaka, Oryzias javanicus: A Small Aquarium Fish Model for Studies on Adaptation to Salinity
Yusuke Takehana et al.
G3-GENES GENOMES GENETICS (2020)
An Annotated Chromosome-Level Reference Genome of the Red-Eared Slider Turtle (Trachemys scripta elegans)
Warren Brian Simison et al.
GENOME BIOLOGY AND EVOLUTION (2020)
RepeatModeler2 for automated genomic discovery of transposable element families
Jullien M. Flynn et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
A Highly Contiguous Genome for the Golden-Fronted Woodpecker (Melanerpes aurifrons) via Hybrid Oxford Nanopore and Short Read Assembly
Graham Wiley et al.
G3-GENES GENOMES GENETICS (2020)
High-quality genome assembly and transcriptome of Ancherythroculter nigrocauda, an endemic Chinese cyprinid species
Hua-Hao Zhang et al.
MOLECULAR ECOLOGY RESOURCES (2020)
HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads
Sergey Nurk et al.
GENOME RESEARCH (2020)
The genome polishing tool POLCA makes fast and accurate corrections in genome assemblies
Aleksey V. Zimin et al.
PLOS COMPUTATIONAL BIOLOGY (2020)
Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K)
Guangyi Fan et al.
GIGASCIENCE (2020)
High-quality chromosome-level genome assembly and full-length transcriptome analysis of the pharaoh ant Monomorium pharaonis
Qionghua Gao et al.
GIGASCIENCE (2020)
Single-Molecule Real-Time (SMRT) Isoform Sequencing (Iso-Seq) in Plants: The Status of the Bioinformatics Tools to Unravel the Transcriptome Complexity
Yubang Gao et al.
CURRENT BIOINFORMATICS (2019)
Chromosome-level genome assembly of Triplophysa tibetana, a fish adapted to the harsh high-altitude environment of the Tibetan Plateau
Xuefen Yang et al.
MOLECULAR ECOLOGY RESOURCES (2019)
Assembly of long, error-prone reads using repeat graphs
Mikhail Kolmogorov et al.
NATURE BIOTECHNOLOGY (2019)
A taxonomic revision of Cheilodactylidae and Latridae (Centrarchiformes: Cirrhitoidei) using morphological and genomic characters
William B. Ludt et al.
ZOOTAXA (2019)
A hybrid de novo assembly of the sea pansy (Renilla muelleri) genome
Justin B. Jiang et al.
GIGASCIENCE (2019)
De novo assembly of the Indian blue peacock (Pavo cristatus) genome using Oxford Nanopore technology and Illumina sequencing
Ruby Dhar et al.
GIGASCIENCE (2019)
De novo assembly of a chromosome-level reference genome of red-spotted grouper (Epinephelus akaara) using nanopore sequencing and Hi-C
Hui Ge et al.
MOLECULAR ECOLOGY RESOURCES (2019)
The First Highly Contiguous Genome Assembly of Pikeperch (Sander lucioperca), an Emerging Aquaculture Species in Europe
Julien Alban Nguinkal et al.
GENES (2019)
Hybrid genome assembly and annotation of Danionella translucida
Mykola Kadobianskyi et al.
SCIENTIFIC DATA (2019)
Realizing the potential of full-length transcriptome sequencing
Ashley Byrne et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2019)
Full-length transcriptome reconstruction reveals a large diversity of RNA and protein isoforms in rat hippocampus
Xi Wang et al.
NATURE COMMUNICATIONS (2019)
Whole Genome Assembly of the Snout Otter Clam, Lutraria rhynchaena, Using Nanopore and Illumina Data, Benchmarked Against Bivalve Genome Assemblies
Binh Thanh Thai et al.
FRONTIERS IN GENETICS (2019)
Full-length transcriptome analysis of Litopenaeus vannamei reveals transcript variants involved in the innate immune system
Xiujuan Zhang et al.
FISH & SHELLFISH IMMUNOLOGY (2019)
New Approaches for Genome Assembly and Scaffolding
Edward S. Rice et al.
ANNUAL REVIEW OF ANIMAL BIOSCIENCES, VOL 7 (2019)
Severe Continental-Scale Impacts of Climate Change Are Happening Now: Extreme Climate Events Impact Marine Habitat Forming Communities Along 45% of Australia's Coast
Russell C. Babcock et al.
FRONTIERS IN MARINE SCIENCE (2019)
Improved metagenomic analysis with Kraken 2
Derrick E. Wood et al.
GENOME BIOLOGY (2019)
Minimap2: pairwise alignment for nucleotide sequences
Heng Li
BIOINFORMATICS (2018)
Comparative genome analysis of 52 fish species suggests differential associations of repetitive elements with their living aquatic environments
Zihao Yuan et al.
BMC GENOMICS (2018)
Population genetic signatures of a climate change driven marine range extension
Jorge E. Ramos et al.
SCIENTIFIC REPORTS (2018)
Isoform Sequencing and State-of-Art Applications for Unravelling Complexity of Plant Transcriptomes
Dong An et al.
GENES (2018)
Finding Nemo: hybrid assembly with Oxford Nanopore and Illumina reads greatly improves the clownfish (Amphiprion ocellaris) genome assembly
Mun Hua Tan et al.
GIGASCIENCE (2018)
A fast adaptive algorithm for computing whole-genome homology maps
Chirag Jain et al.
BIOINFORMATICS (2018)
High resolution annotation of zebrafish transcriptome using long-read sequencing
German Nudelman et al.
GENOME RESEARCH (2018)
Exploring the genome and transcriptome of the cave nectar bat Eonycteris spelaea with PacBio long-read sequencing
Ming Wen et al.
GIGASCIENCE (2018)
Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies
Michael J. Roach et al.
BMC BIOINFORMATICS (2018)
Comparative morphology and phylogenetic systematics of the families Cheilodactylidae and Latridae (Perciformes: Cirrhitoidea), and proposal of a new classification
Katsuya Kimura et al.
ZOOTAXA (2018)
SUPPA2: fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions
Juan L. Trincado et al.
GENOME BIOLOGY (2018)
The value of new genome references
Kim C. Worley et al.
EXPERIMENTAL CELL RESEARCH (2017)
Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm
Aleksey V. Zimin et al.
GENOME RESEARCH (2017)
Harnessing the Power of Genomics to Secure the Future of Seafood
Louis Bernatchez et al.
TRENDS IN ECOLOGY & EVOLUTION (2017)
De novo genome assembly and annotation of Australia's largest freshwater fish, the Murray cod (Maccullochella peelii) from Illumina and Nanopore sequencing reads
Christopher M. Austin et al.
GIGASCIENCE (2017)
An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing
Aleksey V. Zimin et al.
GIGASCIENCE (2017)
Rapid de novo assembly of the European eel genome from nanopore sequencing reads
Hans J. Jansen et al.
SCIENTIFIC REPORTS (2017)
GenomeScope: fast reference-free genome profiling from short reads
Gregory W. Vurture et al.
BIOINFORMATICS (2017)
Ensembl Genomes 2016: more genomes, more complexity
Paul Julian Kersey et al.
NUCLEIC ACIDS RESEARCH (2016)
Phylogenetic placement of enigmatic percomorph families (Teleostei: Percomorphaceae)
Millicent D. Sanciangco et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
The draft genome of the grass carp (Ctenopharyngodon idellus) provides insights into its evolution and vegetarian adaptation
Yaping Wang et al.
NATURE GENETICS (2015)
The Genome 10K Project: A Way Forward
Klaus-Peter Koepfli et al.
ANNUAL REVIEW OF ANIMAL BIOSCIENCES, VOL 3 (2015)
Widespread intron retention in mammals functionally tunes transcriptomes
Ulrich Braunschweig et al.
GENOME RESEARCH (2014)
The draft genome of the large yellow croaker reveals well-developed innate immunity
Changwen Wu et al.
NATURE COMMUNICATIONS (2014)
The MaSuRCA genome assembler
Aleksey V. Zimin et al.
BIOINFORMATICS (2013)
Hybrid error correction and de novo assembly of single-molecule sequencing reads
Sergey Koren et al.
NATURE BIOTECHNOLOGY (2012)
Feature-by-Feature - Evaluating De Novo Sequence Assembly
Francesco Vezzi et al.
PLOS ONE (2012)
Reevaluating Assembly Evaluations with Feature Response Curves: GAGE and Assemblathons
Francesco Vezzi et al.
PLOS ONE (2012)
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
Guillaume Marcais et al.
BIOINFORMATICS (2011)
MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
Carson Holt et al.
BMC BIOINFORMATICS (2011)
The Pace of Shifting Climate in Marine and Terrestrial Ecosystems
Michael T. Burrows et al.
SCIENCE (2011)
Biases in Illumina transcriptome sequencing caused by random hexamer priming
Kasper D. Hansen et al.
NUCLEIC ACIDS RESEARCH (2010)
JBrowse: A next-generation genome browser
Mitchell E. Skinner et al.
GENOME RESEARCH (2009)
Aggressive assembly of pyrosequencing reads with mates
Jason R. Miller et al.
BIOINFORMATICS (2008)
AUGUSTUS: a web server for gene finding in eukaryotes
M Stanke et al.
NUCLEIC ACIDS RESEARCH (2004)