相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。De Novo Genome Assembly and Annotation of an Andean Caddisfly, Atopsyche davidsoni Sykora, 1991, a Model for Genome Research of High-Elevation Adaptations
Blanca Rios-Touma et al.
GENOME BIOLOGY AND EVOLUTION (2022)
Genome size evolution in the diverse insect order Trichoptera
Jacqueline Heckenhauer et al.
GIGASCIENCE (2022)
Timing and mechanisms of Tibetan Plateau uplift
Lin Ding et al.
NATURE REVIEWS EARTH & ENVIRONMENT (2022)
Gene Flow and Diversification in Himalopsyche martynovi Species Complex (Trichoptera: Rhyacophilidae) in the Hengduan Mountains
Xi-Ling Deng et al.
BIOLOGY-BASEL (2021)
A Cautionary Note on the Use of Genotype Callers in Phylogenomics
Pablo Duchen et al.
SYSTEMATIC BIOLOGY (2021)
Population genomics for wildlife conservation and management
Paul A. Hohenlohe et al.
MOLECULAR ECOLOGY (2021)
Draft Genome Assemblies and Annotations of Agrypnia vestita Walker, and Hesperophylax magnus Banks Reveal Substantial Repetitive Element Expansion in Tube Case-Making Caddisflies (Insecta: Trichoptera)
Lindsey K. Olsen et al.
GENOME BIOLOGY AND EVOLUTION (2021)
Long Reads Are Revolutionizing 20 Years of Insect Genome Sequencing
Scott Hotaling et al.
GENOME BIOLOGY AND EVOLUTION (2021)
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
Bui Quang Minh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
Fast and accurate long-read assembly with wtdbg2
Jue Ruan et al.
NATURE METHODS (2020)
A multigene phylogeny and timeline for Trichoptera (Insecta)
Jessica A. Thomas et al.
SYSTEMATIC ENTOMOLOGY (2020)
RepeatModeler2 for automated genomic discovery of transposable element families
Jullien M. Flynn et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes
T. Rhyker Ranallo-Benavidez et al.
NATURE COMMUNICATIONS (2020)
Aquatic Insects Are Dramatically Underrepresented in Genomic Research
Scott Hotaling et al.
INSECTS (2020)
Progressive Cactus is a multiple-genome aligner for the thousand-genome era
Joel Armstrong et al.
NATURE (2020)
ngsLD: evaluating linkage disequilibrium using genotype likelihoods
Emma A. Fox et al.
BIOINFORMATICS (2019)
A genomic approach to inferring kinship reveals limited intergenerational dispersal in the yellow fever mosquito
Moshe Jasper et al.
MOLECULAR ECOLOGY RESOURCES (2019)
Diversity and Ecosystem Services of Trichoptera
John C. Morse et al.
INSECTS (2019)
Molecular phylogeny of Himalopsyche (Trichoptera, Rhyacophilidae)
Anna E. Hjalmarsson et al.
SYSTEMATIC ENTOMOLOGY (2019)
Delimitation and description of three new species of Himalopsyche (Trichoptera: Rhyacophilidae) from the Hengduan Mountains, China
Anna E. Hjalmarsson
ZOOTAXA (2019)
The presence and impact of reference bias on population genomic studies of prehistoric human populations
Torsten Gunther et al.
PLOS GENETICS (2019)
Optimal sequencing depth design for whole genome re-sequencing in pigs
Yifan Jiang et al.
BMC BIOINFORMATICS (2019)
Annotated Draft Genomes of Two Caddisfly Species Plectrocnemia conspersa CURTIS and Hydropsyche tenuis NAVAS (Insecta: Trichoptera)
Jacqueline Heckenhauer et al.
GENOME BIOLOGY AND EVOLUTION (2019)
The Value of Reference Genomes in the Conservation of Threatened Species
Parice Brandies et al.
GENES (2019)
UFBoot2: Improving the Ultrafast Bootstrap Approximation
Diep Thi Hoang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics
Robert M. Waterhouse et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
Minimap2: pairwise alignment for nucleotide sequences
Heng Li
BIOINFORMATICS (2018)
The genomic footprint of climate adaptation in Chironomus riparius
Ann-Marie Waldvogel et al.
MOLECULAR ECOLOGY (2018)
Integrative approaches to guide conservation decisions: Using genomics to define conservation units and functional corridors
Soraia Barbosa et al.
MOLECULAR ECOLOGY (2018)
Molecular association and morphological characterisation of Himalopsyche larval types (Trichoptera, Rhyacophilidae)
Anna E. Hjalmarsson et al.
ZOOKEYS (2018)
Genome-Wide Comparative Analysis of Aspergillus fumigatus Strains: The Reference Genome as a Matter of Concern
Rocio Garcia-Rubio et al.
GENES (2018)
Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies
Michael J. Roach et al.
BMC BIOINFORMATICS (2018)
The genome of an underwater architect, the caddisfly Stenopsyche tienmushanensis Hwang (Insecta: Trichoptera)
Shiqi Luo et al.
GIGASCIENCE (2018)
Inferring Population Structure and Admixture Proportions in Low-Depth NGS Data
Jonas Meisner et al.
GENETICS (2018)
Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm
Aleksey V. Zimin et al.
GENOME RESEARCH (2017)
Fast and accurate de novo genome assembly from long uncorrected reads
Robert Vaser et al.
GENOME RESEARCH (2017)
ModelFinder: fast model selection for accurate phylogenetic estimates
Subha Kalyaanamoorthy et al.
NATURE METHODS (2017)
GenomeScope: fast reference-free genome profiling from short reads
Gregory W. Vurture et al.
BIOINFORMATICS (2017)
The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics
Shyam Gopalakrishnan et al.
BMC GENOMICS (2017)
MultiQC: summarize analysis results for multiple tools and samples in a single report
Philip Ewels et al.
BIOINFORMATICS (2016)
Environmental and spatial characterisation of an unknown fauna using DNA sequencing - an example with Himalayan Hydropsychidae (Insecta: Trichoptera)
Felicitas Hoppeler et al.
FRESHWATER BIOLOGY (2016)
Coming of age: ten years of next-generation sequencing technologies
Sara Goodwin et al.
NATURE REVIEWS GENETICS (2016)
Using intron position conservation for homology-based gene prediction
Jens Keilwagen et al.
NUCLEIC ACIDS RESEARCH (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
Ancient Wolf Genome Reveals an Early Divergence of Domestic Dog Ancestors and Admixture into High-Latitude Breeds
Pontus Skoglund et al.
CURRENT BIOLOGY (2015)
A complete bacterial genome assembled de novo using only nanopore sequencing data
Nicholas J. Loman et al.
NATURE METHODS (2015)
Mapping Bias Overestimates Reference Allele Frequencies at the HLA Genes in the 1000 Genomes Project Phase I Data
Debora Y. C. Brandt et al.
G3-GENES GENOMES GENETICS (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
ANGSD: Analysis of Next Generation Sequencing Data
Thorfinn Sand Korneliussen et al.
BMC BIOINFORMATICS (2014)
Characterizing Bias in Population Genetic Inferences from Low-Coverage Sequencing Data
Eunjung Han et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Sequencing depth and coverage: key considerations in genomic analyses
David Sims et al.
NATURE REVIEWS GENETICS (2014)
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
Bruce J. Walker et al.
PLOS ONE (2014)
Genome sequencing and population genomics in non-model organisms
Hans Ellegren
TRENDS IN ECOLOGY & EVOLUTION (2014)
The MaSuRCA genome assembler
Aleksey V. Zimin et al.
BIOINFORMATICS (2013)
QUAST: quality assessment tool for genome assemblies
Alexey Gurevich et al.
BIOINFORMATICS (2013)
HAL: a hierarchical format for storing and analyzing multiple genome alignments
Glenn Hickey et al.
BIOINFORMATICS (2013)
Calculation of Tajima's D and other neutrality test statistics from low depth next-generation sequencing data
Thorfinn Sand Korneliussen et al.
BMC BIOINFORMATICS (2013)
Estimating Individual Admixture Proportions from Next Generation Sequencing Data
Line Skotte et al.
GENETICS (2013)
River network properties shape α-diversity and community similarity patterns of aquatic insect communities across major drainage basins
Florian Altermatt et al.
JOURNAL OF BIOGEOGRAPHY (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Assessing the Effect of Sequencing Depth and Sample Size in Population Genetics Inferences
Matteo Fumagalli
PLOS ONE (2013)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Assessing the Accuracy and Power of Population Genetic Inference from Low-Pass Next-Generation Sequencing Data
Jacob E. Crawford et al.
Frontiers in Genetics (2012)
The variant call format and VCFtools
Petr Danecek et al.
BIOINFORMATICS (2011)
Integrative freshwater ecology and biodiversity conservation
Juergen Geist
ECOLOGICAL INDICATORS (2011)
From the Western Alps across Central Europe: Postglacial recolonisation of the tufa stream specialist Rhyacophila pubescens (Insecta, Trichoptera)
Christine H. M. Engelhardt et al.
FRONTIERS IN ZOOLOGY (2011)
Genotype and SNP calling from next-generation sequencing data
Rasmus Nielsen et al.
NATURE REVIEWS GENETICS (2011)
Overcoming bias and systematic errors in next generation sequencing data
Margaret A. Taub et al.
GENOME MEDICINE (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
The Melting Himalayas: Cascading Effects of Climate Change on Water, Biodiversity, and Livelihoods
Jianchu Xu et al.
CONSERVATION BIOLOGY (2009)
High-throughput functional annotation and data mining with the Blast2GO suite
Stefan Gotz et al.
NUCLEIC ACIDS RESEARCH (2008)
Importance of water flow on larval growth and pupation of Himalopsyche acharai, (Malicky and Chantaramongkol, 1989) (Trichoptera: Rhyacophilidae)
Tatsu Tsuruishi et al.
HYDROBIOLOGIA (2006)
Dispersal of adult aquatic insects in catchments of differing land use
I Petersen et al.
JOURNAL OF APPLIED ECOLOGY (2004)
分享论文
