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John G. Tate et al.
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Marion Classe et al.
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Gabriel G. Malouf et al.
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Mutational signatures: the patterns of somatic mutations hidden in cancer genomes
Ludmil B. Alexandrov et al.
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John R. Srigley et al.
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Helga Thorvaldsdottir et al.
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Genomic Heterogeneity of Translocation Renal Cell Carcinoma
Gabriel G. Malouf et al.
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Michael S. Lawrence et al.
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Aaron M. Robitaille et al.
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Qiu Rao et al.
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TFE3 Rearrangements in Adult Renal Cell Carcinoma: Clinical and Pathologic Features With Outcome in a Large Series of Consecutively Treated Patients
William R. Sukov et al.
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Lydie Cheval et al.
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Wei Zhang et al.
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Gabriel G. Malouf et al.
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Atanas Kamburov et al.
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Chuan Shen et al.
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Jill M. Hagenkord et al.
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Craig H. Mermel et al.
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Targeted agents in metastatic Xp11 translocation/TFE3 gene fusion renal cell carcinoma (RCC): a report from the Juvenile RCC Network
G. G. Malouf et al.
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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
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ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
Kai Wang et al.
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Pedram Argani et al.
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Yoshinobu Komai et al.
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Jacek R. Wisniewski et al.
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Philippe Camparo et al.
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Yuhuan Li et al.
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Xp11 translocation renal cell carcinoma in adults: Expanded clinical, pathologic, and genetic spectrum
Pedram Argani et al.
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Xp11.2 translocation renal cell carcinoma with very aggressive course in five adults
Paul N. Meyer et al.
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Dorothee Schmid et al.
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Bassam Janji et al.
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A Subramanian et al.
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E Bruder et al.
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PRCC-TFE3 renal carcinomas -: Morphologic, immunohistochemical, ultrastructural, and molecular analysis of an entity associated with the t(X;1)(p11.2;q21)
P Argani et al.
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Primary renal neoplasms with the ASPL-TFE3 gene fusion of alveolar soft part sarcoma -: A distinctive tumor entity previously included among renal cell carcinomas of children and adolescents
P Argani et al.
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ES Lander et al.
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