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Vegetable biology and breeding in the genomics era

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Article Plant Sciences

SlWRKY35 positively regulates carotenoid biosynthesis by activating the MEP pathway in tomato fruit

Yong Yuan et al.

Summary: Carotenoids are important phytonutrients and the study identifies SlWRKY35 as a positive regulator of carotenoid biosynthesis in tomato. SlWRKY35 activates the expression of the SlDXS1 gene to enhance carotenoid accumulation. The master regulator SlRIN is also involved in regulating SlWRKY35 during tomato fruit ripening.

NEW PHYTOLOGIST (2022)

Letter Biotechnology & Applied Microbiology

In vivo maternal haploid induction in tomato

Yu Zhong et al.

PLANT BIOTECHNOLOGY JOURNAL (2022)

Article Agronomy

CmPMRl and CmPMrs are responsible for resistance to powdery mildew caused by Podosphaera xanthii race 1 in Melon

Haonan Cui et al.

Summary: In this study, two genes for resistance to Podosphaera xanthii race 1 in melon were identified. Through the analysis of the disease-resistant MR-1 melon cultivar, two candidate genes related to powdery mildew resistance were found. These findings provide new genetic resources and markers for marker-assisted breeding for powdery mildew resistance in melon.

THEORETICAL AND APPLIED GENETICS (2022)

Article Multidisciplinary Sciences

Graph-based pan-genome reveals structural and sequence variations related to agronomic traits and domestication in cucumber

Hongbo Li et al.

Summary: We report a graph-based cucumber pan-genome by analyzing twelve chromosome-scale genome assemblies, and identify approximately 4.3 million genetic variants, including 56,214 structural variants. These findings provide valuable resources for studying agronomic traits and breeding of cucumber.

NATURE COMMUNICATIONS (2022)

Article Biochemistry & Molecular Biology

SlERF.F12 modulates the transition to ripening in tomato fruit by recruiting the co-repressor TOPLESS and histone deacetylases to repress key ripening genes

Heng Deng et al.

Summary: This study reveals that SlERF.F12, an ethylene response factor, negatively regulates the initiation of tomato fruit ripening by recruiting a co-repressor and histone deacetylases. SlERF.F12 interacts with the co-repressor and recruits histone deacetylases to form a complex, which decreases the acetylation level at the promoter regions of ripening genes, thus repressing their transcription.

PLANT CELL (2022)

Article Multidisciplinary Sciences

Breeding future crops to feed the world through de novo domestication

Hong Yu et al.

Summary: This article highlights the need for a 50% increase in agricultural productivity by the end of this century to address global food challenges. Recent studies have introduced de novo domestication of wild plants as a novel crop breeding strategy.

NATURE COMMUNICATIONS (2022)

Article Biochemistry & Molecular Biology

A telomere-to-telomere gap-free reference genome of watermelon and its mutation library provide important resources for gene discovery and breeding

Yun Deng et al.

Summary: This study presents the assembly of a high-quality, gap-free watermelon G42 genome, including complete chromosomes, protein-coding genes, and telomeres. A pollen-EMS mutagenesis protocol was established, producing a large number of mutations seeds, which are valuable for functional genomics and genetic improvement.

MOLECULAR PLANT (2022)

Article Multidisciplinary Sciences

Graph pangenome captures missing heritability and empowers tomato breeding

Yao Zhou et al.

Summary: Constructing a graph pangenome of tomato can improve the estimation of heritability for complex traits, identify more causal structural variants, and facilitate the identification of genetic factors underlying agronomically important traits. This study advances our understanding of the heritability of complex traits and demonstrates the power of the graph pangenome in crop breeding.

NATURE (2022)

Article Multidisciplinary Sciences

Genome evolution and diversity of wild and cultivated potatoes

Die Tang et al.

Summary: This study assembles 44 high-quality diploid potato genomes to investigate the genome evolution and diversity of potatoes. The results show a substantial expansion of disease-resistance genes in the potato genome compared to related solanaceous crops, indicating the impact of tuber-based propagation strategies on potato genome evolution. The study also identifies a transcription factor that determines tuber identity and its interaction with an inductive signal.

NATURE (2022)

Article Multidisciplinary Sciences

The 3D architecture of the pepper genome and its relationship to function and evolution

Yi Liao et al.

Summary: This study reports a high-quality reference-grade pepper genome assembly and investigates the 3D organization of pepper chromatin through integrating multiple data methods. The results suggest that the organization of pepper chromatin is explained by a model of heterochromatin-driven folding and is under structural and functional constraints.

NATURE COMMUNICATIONS (2022)

Article Plant Sciences

Fine Mapping of the Ph-2 Gene Conferring Resistance to Late Blight (Phytophthora infestans) in Tomato

Xiaona Zhi et al.

Summary: The study conducted fine mapping of the Ph-2 gene in an F-2 population of tomato, identifying several putative R genes and developing markers that could be useful for molecular breeding of tomatoes with increased late blight resistance.

PLANT DISEASE (2021)

Article Agronomy

QTL-seq analysis of powdery mildew resistance in a Korean cucumber inbred line

Chunying Zhang et al.

Summary: Through QTL mapping and RT-PCR analyses, the CsGy5G015660 gene was identified as a strong candidate gene for powdery mildew resistance in cucumber, with natural variation observed in its allele. Two powdery mildew resistance loci were validated using molecular marker-based QTL analysis, providing new genetic insights for cucumber PM resistance breeding programs.

THEORETICAL AND APPLIED GENETICS (2021)

Article Genetics & Heredity

De novo genome assembly of two tomato ancestors, Solanum pimpinellifolium and Solanum lycopersicum var. cerasiforme, by long-read sequencing

Hitomi Takei et al.

Summary: This research successfully constructed high-quality genome assemblies of two ancestral tomato species, 'LA1670' and 'LA1673', predict a large number of protein-coding genes and validated them using transcriptome data, providing valuable resources for studying tomato domestication and breeding at a genome-scale level.

DNA RESEARCH (2021)

Letter Biotechnology & Applied Microbiology

Tolerance to tomato yellow leaf curl virus in transgenic tomato overexpressing a cellulose synthase-like gene

Siwon Choe et al.

PLANT BIOTECHNOLOGY JOURNAL (2021)

Article Biotechnology & Applied Microbiology

Assembly of the non-heading pak choi genome and comparison with the genomes of heading Chinese cabbage and the oilseed yellow sarson

Peirong Li et al.

Summary: The study presents a high-quality genome assembly for pak choi (Brassica rapa L. subsp. chinensis) and compares it with other Brassica genomes, providing valuable insights into the genetic improvement of vegetable crops and understanding morphological diversity across Brassica species.

PLANT BIOTECHNOLOGY JOURNAL (2021)

Article Biochemistry & Molecular Biology

Highly efficient, genotype-independent transformation and gene editing in watermelon (Citrullus lanatus) using a chimeric ClGRF4-GIF1 gene

Qin Feng et al.

Summary: Efficient genetic transformation was achieved in watermelon by overexpressing a fusion of two transcription factors, leading to improved regeneration. Combining with gene editing tools, highly efficient gene editing was also demonstrated, resulting in the creation of seedless watermelon.

JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2021)

Article Biochemistry & Molecular Biology

A route to de novo domestication of wild allotetraploid rice

Hong Yu et al.

Summary: The study presents a strategy for de novo domestication of wild allotetraploid rice and establishes necessary resources for this purpose, demonstrating the rapid improvement of agronomically important traits through gene editing.
Article Biochemistry & Molecular Biology

Conserved pleiotropy of an ancient plant homeobox gene uncovered by cis-regulatory dissection

Anat Hendelman et al.

Summary: The study explores the functional divergence of WOX9 in tomato and reveals hidden pleiotropic roles through a comprehensive allelic series. Mimicking these alleles in Arabidopsis exposes new inflorescence phenotypes, indicating deeply conserved pleiotropy in gene function. The findings suggest that targeted cis-regulatory mutations can uncover conserved gene functions and reduce undesirable effects in crop improvement.
Article Multidisciplinary Sciences

Genomic analyses provide insights into spinach domestication and the genetic basis of agronomic traits

Xiaofeng Cai et al.

Summary: This study presents a high-quality reference genome assembly of spinach and population genomic analyses, shedding light on genome rearrangements during spinach domestication and the impact of artificial selection on spinach phenotypic evolution. This research also identifies domestication sweeps in the spinach genome associated with important traits, providing valuable resources for spinach breeding.

NATURE COMMUNICATIONS (2021)

Article Biochemistry & Molecular Biology

FERONIA receptor kinase-regulated reactive oxygen species mediate self-incompatibility in Brassica rapa

Lili Zhang et al.

Summary: Self-incompatibility (SI) mechanisms in plants involve the recognition of self-pollen by specific interactions between pollen ligands and stigma receptors, culminating in the rejection of self-pollen. This study reveals that in heading Chinese cabbage, high levels of reactive oxygen species (ROS) produced in stigma papilla cells mediate the SI response, leading to the rejection of self-pollen.

CURRENT BIOLOGY (2021)

Article Plant Sciences

The transcription factor WRKY32 affects tomato fruit colour by regulating YELLOW FRUITED-TOMATO 1, a core component of ethylene signal transduction

Weihua Zhao et al.

Summary: The transcription factor WRKY32 plays a crucial role in regulating tomato fruit color formation by binding to the YFT1 promoter region and inducing its expression, affecting ethylene signal transduction. WRKY32 regulates ethylene signaling in tomato fruit, leading to suppression of ethylene emission, delayed chromoplast development, decreased carotenoid accumulation, and a yellow fruit phenotype. These findings provide new insights into the regulatory networks governing tomato fruit color formation through ethylene signal transduction.

JOURNAL OF EXPERIMENTAL BOTANY (2021)

Article Genetics & Heredity

Whole-genome resequencing of 445 Lactuca accessions reveals the domestication history of cultivated lettuce

Tong Wei et al.

Summary: This study conducted whole-genome resequencing of 445 Lactuca accessions, including major lettuce crop types and wild relative species, providing a comprehensive map of lettuce genome variations and shedding light on the domestication history of cultivated lettuce. The research revealed that lettuce was first domesticated near the Caucasus, marked by loss of seed shattering, and identified the genetic architecture of other domestication traits and wild introgressions in major resistance clusters in the lettuce genome. This study offers valuable genomic resources for crop breeding and contributes to a better understanding of the domestication history of cultivated lettuce.

NATURE GENETICS (2021)

Article Plant Sciences

A mutation in Zeaxanthin epoxidase contributes to orange coloration and alters carotenoid contents in pepper fruit (Capsicum annuum)

Seo-Young Lee et al.

Summary: This study identified the key role of a gene called ZEP in fruit color formation in peppers. The inheritance of the ZEP genotype can determine whether peppers will have orange or yellow mature fruit.

PLANT JOURNAL (2021)

Article Biochemistry & Molecular Biology

Pan-genome of Raphanus highlights genetic variation and introgression among domesticated, wild, and weedy radishes

Xiaohui Zhang et al.

Summary: The study presents de novo sequence assemblies for various sub-species and varieties of radishes from different regions, revealing genetic variations, gene flow, and genomic diversity. The findings shed light on the genomic evolution and provide insights for genetic improvement of radish crops.

MOLECULAR PLANT (2021)

Article Plant Sciences

Genome-wide association study reveals the genetic architecture of 27 agronomic traits in tomato

Jie Ye et al.

Summary: Tomato yield is an important agronomic trait, and this study identified key genetic loci associated with yield through comprehensive genome-wide association analysis, revealing some genes related to tomato domestication and improvement. Furthermore, a candidate gene related to leaf stomata formation was functionally characterized, providing valuable information for genetics and breeding of tomato.

PLANT PHYSIOLOGY (2021)

Article Multidisciplinary Sciences

Cauliflower fractal forms arise from perturbations of floral gene networks

Eugenio Azpeitia et al.

Summary: This study reveals that the fractal-like forms in cauliflowers emerge from the combination of key, defined perturbations of floral developmental programs and growth dynamics. The self-similarity of curds is due to meristems failing to form flowers but retaining the memory of their floral state. Additional mutations affecting meristem growth can induce the production of conical structures reminiscent of the Romanesco shape.

SCIENCE (2021)

Article Genetics & Heredity

Insights from the first genome assembly of Onion (Allium cepa)

Richard Finkers et al.

Summary: This study presents the de novo assembly and annotation of the onion genome, resulting in a high-quality sequence for future research on onion genetics. The genome assembly revealed insights into the repetitive sequences and gene distribution, as well as the synteny with garlic, showing both collinearity and major rearrangements between the two species.

G3-GENES GENOMES GENETICS (2021)

Review Plant Sciences

Genetic regulation of shoot architecture in cucumber

Xiaofeng Liu et al.

Summary: Cucumber is an important vegetable crop with significant economic value, and its shoot architecture plays a crucial role in crop management and yield. Unlike most plant species, cucumber undergoes both vegetative and reproductive growth simultaneously, a unique feature of the Cucurbitaceae family. Despite advances in understanding shoot architecture in other crops, mechanisms controlling cucumber's architecture are still limited.

HORTICULTURE RESEARCH (2021)

Article Plant Sciences

Plasma membrane-localized SlSWEET7a and SlSWEET14 regulate sugar transport and storage in tomato fruits

Xinsheng Zhang et al.

Summary: The study found that suppressing SlSWEET7a and SlSWEET14 can increase the sugar content of tomato fruits, as well as result in taller plants and larger fruits. Additionally, there was an observed increase in invertase activity and gene expression of certain SlSWEET members, consistent with the higher availability of sucrose and hexose in the fruits.

HORTICULTURE RESEARCH (2021)

Article Biochemistry & Molecular Biology

Evolutionary gain of oligosaccharide hydrolysis and sugar transport enhanced carbohydrate partitioning in sweet watermelon fruits

Yi Ren et al.

Summary: The study revealed that the gene ClAGA2 controls Raf hydrolysis and sugar partitioning in watermelon fruits, with SNPs in its promoter affecting expression regulation; ClSWEET3 and ClTST2 genes participate in sugar transport and storage in fruit cells. The selection of ClAGA2, ClSWEET3, and ClTST2 during watermelon domestication led to the development of modern sweet watermelon.

PLANT CELL (2021)

Article Biotechnology & Applied Microbiology

Impacts of allopolyploidization and structural variation on intraspecific diversification in Brassica rapa

Xu Cai et al.

Summary: Despite the prevalence and recurrence of polyploidization in flowering plants, its impacts on crop intraspecific genome diversification remain largely unknown. This study investigates the consequences of whole-genome triplication in Brassica rapa and uncovers the potential contributions of allopolyploidization on intraspecific diversification. Additionally, the role of structural variations in favorable trait domestication is explored.

GENOME BIOLOGY (2021)

Article Biochemistry & Molecular Biology

Gain-of-function of the 1-aminocyclopropane-1-carboxylate synthase gene ACS1G induces female flower development in cucumber gynoecy

Huimin Zhang et al.

Summary: Unisexual flowers in cucumber are controlled by three major loci, including the F locus which determines female development. ACS1G is responsible for conferring gynoecy in the F locus, and its early expression with ACO2 leads to ethylene production, repressing WIP1 and activating ACS2 to initiate female floral development. This cooperative mechanism involving ethylene biosynthesis genes establishes a dominant pathway for controlling unisexual flower development in cucumber.

PLANT CELL (2021)

Article Plant Sciences

Dissecting cis-regulatory control of quantitative trait variation in a plant stem cell circuit

Xingang Wang et al.

Summary: The study found that targeted mutations in conserved promoter sequences of the repressor of stem cell proliferation, SlCLV3, have a weak impact on fruit locule number, but pairwise combinations of these mutations mildly enhance this trait, revealing additive and synergistic relationships. Conversely, the positive regulator of stem cell proliferation, SlWUS, is more tolerant to promoter perturbations. The results suggest that complex interactions among cis-regulatory variants can shape quantitative variation in crop traits.

NATURE PLANTS (2021)

Article Plant Sciences

A complex resistance locus in Solanum americanum recognizes a conserved Phytophthora effector

Kamil Witek et al.

Summary: The study identified a new R gene, Rpi-amr1, from Solanum americanum, which confers resistance in potato to late blight caused by Phytophthora infestans. The diversity within the Rpi-amr1 gene family assists in recognizing diverse effector paralogues and alleles, contributing to durable resistance against P. infestans.

NATURE PLANTS (2021)

Article Plant Sciences

Development of InDel Markers for Brassica rapa Based on a High-resolution Melting Curve

Rong Chen et al.

Summary: By utilizing high-resolution melting curve analysis, insertion-deletion (InDel) markers suitable for Brassica rapa were successfully developed, showing polymorphism and potential for linkage map construction and molecular marker-assisted selection.

HORTICULTURAL PLANT JOURNAL (2021)

Review Biotechnology & Applied Microbiology

How the pan-genome is changing crop genomics and improvement

Rafael Della Coletta et al.

Summary: Crop genomics has advanced significantly in recent years thanks to improvements in sequencing technology, assembly methods, and computational resources. The study of structural variation within species and the characterization of pan-genomes have revealed extensive genome content variation among individuals within a species, which is revolutionizing crop genomics and improvement.

GENOME BIOLOGY (2021)

Article Biochemistry & Molecular Biology

A Transcriptional Network Promotes Anthocyanin Biosynthesis in Tomato Flesh

Chuanlong Sun et al.

MOLECULAR PLANT (2020)

Review Plant Sciences

Super-Pangenome by Integrating the Wild Side of a Species for Accelerated Crop Improvement

Aamir W. Khan et al.

TRENDS IN PLANT SCIENCE (2020)

Article Biotechnology & Applied Microbiology

Rapid customization of Solanaceae fruit crops for urban agriculture

Choon-Tak Kwon et al.

NATURE BIOTECHNOLOGY (2020)

Article Biotechnology & Applied Microbiology

Deciphering the high-quality genome sequence of coriander that causes controversial feelings

Xiaoming Song et al.

PLANT BIOTECHNOLOGY JOURNAL (2020)

Article Biotechnology & Applied Microbiology

DcMYB113, a root-specific R2R3-MYB, conditions anthocyanin biosynthesis and modification in carrot

Zhi-Sheng Xu et al.

PLANT BIOTECHNOLOGY JOURNAL (2020)

Article Plant Sciences

Phytoene synthase 2 can compensate for the absence of PSY1 in the control of color in Capsicum fruit

So-Jeong Jang et al.

JOURNAL OF EXPERIMENTAL BOTANY (2020)

Article Multidisciplinary Sciences

Loss of function of the Pad-1 aminotransferase gene, which is involved in auxin homeostasis, induces parthenocarpy in Solanaceae plants

Satoshi Matsuo et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Article Biotechnology & Applied Microbiology

A GRF-GIF chimeric protein improves the regeneration efficiency of transgenic plants

Juan M. Debernardi et al.

NATURE BIOTECHNOLOGY (2020)

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Application of deep learning in genomics

Jianxiao Liu et al.

SCIENCE CHINA-LIFE SCIENCES (2020)

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From one linear genome to a graph-based pan-genome: a new era for genomics

Yucheng Liu et al.

SCIENCE CHINA-LIFE SCIENCES (2020)

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Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding

Xin Wang et al.

NATURE COMMUNICATIONS (2020)

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FIS1 encodes a GA2-oxidase that regulates fruit firmness in tomato

Ren Li et al.

NATURE COMMUNICATIONS (2020)

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Genetic mapping and candidate gene analysis for melon resistance to Phytophthora capsici

Pingyong Wang et al.

SCIENTIFIC REPORTS (2020)

Article Biochemistry & Molecular Biology

Genetic Regulation of Ethylene Dosage for Cucumber Fruit Elongation

Tongxu Xin et al.

PLANT CELL (2019)

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The genome of cowpea (Vigna unguiculata [L.] Walp.)

Stefano Lonardi et al.

PLANT JOURNAL (2019)

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CsBRC1 inhibits axillary bud outgrowth by directly repressing the auxin efflux carrier CsPIN3 in cucumber

Junjun Shen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

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The wax gourd genomes offer insights into the genetic diversity and ancestral cucurbit karyotype

Dasen Xie et al.

NATURE COMMUNICATIONS (2019)

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A chromosome-anchored eggplant genome sequence reveals key events in Solanaceae evolution

Lorenzo Barchi et al.

SCIENTIFIC REPORTS (2019)

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Efficient BoPDS Gene Editing in Cabbage by the CRISPR/Cas9 System

Cunfa Ma et al.

HORTICULTURAL PLANT JOURNAL (2019)

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An Overlooked Paleotetraploidization in Cucurbitaceae

Jinpeng Wang et al.

MOLECULAR BIOLOGY AND EVOLUTION (2018)

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De novo assembly of the zucchini genome reveals a whole-genome duplication associated with the origin of the Cucurbita genus

Javier Montero-Pau et al.

PLANT BIOTECHNOLOGY JOURNAL (2018)

Article Biochemistry & Molecular Biology

Rewiring of the Fruit Metabolome in Tomato Breeding

Guangtao Zhu et al.

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An improved assembly and annotation of the melon (Cucumis melo L.) reference genome

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SCIENTIFIC REPORTS (2018)

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An EMS mutant library for cucumber

Chen Chen et al.

JOURNAL OF INTEGRATIVE AGRICULTURE (2018)

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Reference quality assembly of the 3.5-Gb genome of Capsicum annuum from a single linked-read library

Amanda M. Hulse-Kemp et al.

HORTICULTURE RESEARCH (2018)

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Antagonistic function of the Ve R-genes in tomato

Ross N. Nazar et al.

PLANT MOLECULAR BIOLOGY (2018)

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Domestication of wild tomato is accelerated by genome editing

Tingdong Li et al.

NATURE BIOTECHNOLOGY (2018)

Article Biotechnology & Applied Microbiology

De novo domestication of wild tomato using genome editing

Agustin Zsogon et al.

NATURE BIOTECHNOLOGY (2018)

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Whole-genome landscape of Medicago truncatula symbiotic genes

Yann Pecrix et al.

NATURE PLANTS (2018)

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The tandem repeated organization of NB-LRR genes in the clubroot-resistant CRb locus in Brassica rapa L.

Katsunori Hatakeyama et al.

MOLECULAR GENETICS AND GENOMICS (2017)

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Efficient CRISPR/Cas9-based gene knockout in watermelon

Shouwei Tian et al.

PLANT CELL REPORTS (2017)

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Karyotype Stability and Unbiased Fractionation in the Paleo-Allotetraploid Cucurbita Genomes

Honghe Sun et al.

MOLECULAR PLANT (2017)

Letter Biochemistry & Molecular Biology

Brassica rapa Genome 2.0: A Reference Upgrade through Sequence Re-assembly and Gene Re-annotation

Chengcheng Cai et al.

MOLECULAR PLANT (2017)

Article Biochemistry & Molecular Biology

CaHDZ27, a Homeodomain-Leucine Zipper I Protein, Positively Regulates the Resistance to Ralstonia solanacearum Infection in Pepper

Shaoliang Mou et al.

MOLECULAR PLANT-MICROBE INTERACTIONS (2017)

Article Biochemistry & Molecular Biology

De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing

Maximilian H. -W. Schmidt et al.

PLANT CELL (2017)

Article Plant Sciences

The RNA Editing Factor SlORRM4 Is Required for Normal Fruit Ripening in Tomato

Yongfang Yang et al.

PLANT PHYSIOLOGY (2017)

Article Multidisciplinary Sciences

PLANT SCIENCE A chemical genetic roadmap to improved tomato flavor

Denise Tieman et al.

SCIENCE (2017)

Article Multidisciplinary Sciences

Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce

Sebastian Reyes-Chin-Wo et al.

NATURE COMMUNICATIONS (2017)

Article Multidisciplinary Sciences

Draft genome of spinach and transcriptome diversity of 120 Spinacia accessions

Chenxi Xu et al.

NATURE COMMUNICATIONS (2017)

Article Multidisciplinary Sciences

The asparagus genome sheds light on the origin and evolution of a young Y chromosome

Alex Harkess et al.

NATURE COMMUNICATIONS (2017)

Article Multidisciplinary Sciences

Rapid breeding of parthenocarpic tomato plants using CRISPR/Cas9

Risa Ueta et al.

SCIENTIFIC REPORTS (2017)

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Accelerated cloning of a potato late blight-resistance gene using RenSeq and SMRT sequencing

Kamil Witek et al.

NATURE BIOTECHNOLOGY (2016)

Article Multidisciplinary Sciences

GAME9 regulates the biosynthesis of steroidal alkaloids and upstream isoprenoids in the plant mevalonate pathway

Pablo D. Cardenas et al.

NATURE COMMUNICATIONS (2016)

Article Biochemistry & Molecular Biology

A Rare SNP Identified a TCP Transcription Factor Essential for Tendril Development in Cucumber

Shenhao Wang et al.

MOLECULAR PLANT (2015)

Article Genetics & Heredity

A cascade of arabinosyltransferases controls shoot meristem size in tomato

Cao Xu et al.

NATURE GENETICS (2015)

Article Plant Sciences

The tomato I-3 gene: a novel gene for resistance to Fusarium wilt disease

Ann-Maree Catanzariti et al.

NEW PHYTOLOGIST (2015)

Article Multidisciplinary Sciences

Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication

Kai Yang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Multidisciplinary Sciences

A cucurbit androecy gene reveals how unisexual flowers develop and dioecy emerges

Adnane Boualem et al.

SCIENCE (2015)

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Fine genetic mapping of target leaf spot resistance gene cca-3 in cucumber, Cucumis sativus L.

Changlong Wen et al.

THEORETICAL AND APPLIED GENETICS (2015)

Article Agronomy

Map-based cloning of a candidate gene conferring Fusarium yellows resistance in Brassica oleracea

Motoki Shimizu et al.

THEORETICAL AND APPLIED GENETICS (2015)

Article Biochemical Research Methods

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis

BIOINFORMATICS (2014)

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Mapping and analysis of a novel candidate Fusarium wilt resistance gene FOC1 in Brassica oleracea

Honghao Lv et al.

BMC GENOMICS (2014)

Article Genetics & Heredity

Draft Sequences of the Radish (Raphanus sativus L.) Genome

Hiroyasu Kitashiba et al.

DNA RESEARCH (2014)

Article Plant Sciences

A 13-lipoxygenase, TomloxC, is essential for synthesis of C5 flavour volatiles in tomato

Jiyuan Shen et al.

JOURNAL OF EXPERIMENTAL BOTANY (2014)

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The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)

Juliane C. Dohm et al.

NATURE (2014)

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The genome of the stress-tolerant wild tomato species Solanum pennellii

Anthony Bolger et al.

NATURE GENETICS (2014)

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A reference genome for common bean and genome-wide analysis of dual domestications

Jeremy Schmutz et al.

NATURE GENETICS (2014)

Article Genetics & Heredity

Genomic analyses provide insights into the history of tomato breeding

Tao Lin et al.

NATURE GENETICS (2014)

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Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization

Cheng Qin et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

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Biosynthesis, regulation, and domestication of bitterness in cucumber

Yi Shang et al.

SCIENCE (2014)

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Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

Boulos Chalhoub et al.

SCIENCE (2014)

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The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes

Shengyi Liu et al.

NATURE COMMUNICATIONS (2014)

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Genome triplication drove the diversification of Brassica plants

Feng Cheng et al.

HORTICULTURE RESEARCH (2014)

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Genetic and chemical characterization of an EMS induced mutation in Cucumis melo CRTISO gene

Navot Galpaz et al.

ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS (2013)

Article Biochemistry & Molecular Biology

Characteristic of the Pepper CaRGA2 Gene in Defense Responses against Phytophthora capsici Leonian

Ying-Li Zhang et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2013)

Article Biotechnology & Applied Microbiology

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

Rajeev K. Varshney et al.

NATURE BIOTECHNOLOGY (2013)

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MutMap plus : Genetic Mapping and Mutant Identification without Crossing in Rice

Rym Fekih et al.

PLOS ONE (2013)

Article Multidisciplinary Sciences

A cytochrome P450 regulates a domestication trait in cultivated tomato

Manohar Chakrabarti et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Agronomy

Development of InDel markers for Brassica rapa based on whole-genome re-sequencing

Bo Liu et al.

THEORETICAL AND APPLIED GENETICS (2013)

Article Biotechnology & Applied Microbiology

Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)

Ray Ming et al.

GENOME BIOLOGY (2013)

Article Agronomy

Characterization of the Fusarium wilt resistance Fom-2 gene in melon

A. Oumouloud et al.

MOLECULAR BREEDING (2012)

Article Multidisciplinary Sciences

The tomato genome sequence provides insights into fleshy fruit evolution

Shusei Sato et al.

NATURE (2012)

Article Biotechnology & Applied Microbiology

Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers

Rajeev K. Varshney et al.

NATURE BIOTECHNOLOGY (2012)

Article Biotechnology & Applied Microbiology

Genome sequencing reveals agronomically important loci in rice using MutMap

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