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Ayako Maeda et al.
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Highly accurate protein structure prediction with AlphaFold
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DYW domain structures imply an unusual regulation principle in plant organellar RNA editing catalysis
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One C-to-U RNA Editing Site and Two Independently Evolved Editing Factors: Testing Reciprocal Complementation with DYW-Type PPR Proteins from the MossPhyscomitrium(Physcomitrella)patensand the Flowering PlantsMacadamia integrifoliaand Arabidopsis
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Plant-type pentatricopeptide repeat proteins with a DYW domain drive C-to-U RNA editing in Escherichia coli
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The DYW Domains of Pentatricopeptide Repeat RNA Editing Factors Contribute to Discriminate Target and Non-Target Editing Sites
Mizuho Ichinose et al.
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RNA Editing and Its Molecular Mechanism in Plant Organelles
Mizuho Ichinose et al.
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A protein with an unusually short PPR domain, MEF8, affects editing at over 60 Arabidopsis mitochondrial C targets of RNA editing
Michael F. Diaz et al.
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The chloroplast RNA helicase ISE2 is required for multiple chloroplast RNA processing steps in Arabidopsis thaliana
Krzysztof Bobik et al.
PLANT JOURNAL (2017)
Two interacting PPR proteins are major Arabidopsis editing factors in plastid and mitochondria
Damien Guillaumot et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Multiple PPR protein interactions are involved in the RNA editing system in Arabidopsis mitochondria and plastids
Nuria Andres-Colas et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
A genome-wide identification and analysis of the DYW-deaminase genes in the pentatricopeptide repeat gene family in cotton (Gossypium spp.)
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Redefining the structural motifs that determine RNA binding and RNA editing by pentatricopeptide repeat proteins in land plants
Shifeng Cheng et al.
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Structural basis for specific single-stranded RNA recognition by designer pentatricopeptide repeat proteins
Cuicui Shen et al.
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A Conserved Glutamate Residue in the C-terminal Deaminase Domain of Pentatricopeptide Repeat Proteins Is Required for RNA Editing Activity
Michael L. Hayes et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2015)
A Zinc Finger Motif-Containing Protein Is Essential for Chloroplast RNA Editing
Tao Sun et al.
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Cytidine Deaminase Motifs within the DYW Domain of Two Pentatricopeptide Repeat-containing Proteins Are Required for Site-specific Chloroplast RNA Editing
Jessica A. Wagoner et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2015)
The cytidine deaminase signature HxE(x)nCxxC of DYW1 binds zinc and is necessary for RNA editing of ndhD-1
Clement Boussardon et al.
NEW PHYTOLOGIST (2014)
Tetrapyrrole biosynthetic enzyme protoporphyrinogen IX oxidase 1 is required for plastid RNA editing
Fan Zhang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Identification of Two Pentatricopeptide Repeat Genes Required for RNA Editing and Zinc Binding by C-terminal Cytidine Deaminase-like Domains
Michael L. Hayes et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2013)
Structural basis for the modular recognition of single-stranded RNA by PPR proteins
Ping Yin et al.
NATURE (2013)
Elucidation of the RNA Recognition Code for Pentatricopeptide Repeat Proteins Involved in Organelle RNA Editing in Plants
Yusuke Yagi et al.
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Improved Computational Target Site Prediction for Pentatricopeptide Repeat RNA Editing Factors
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An RNA recognition motif-containing protein is required for plastid RNA editing in Arabidopsis and maize
Tao Sun et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Two Related RNA-editing Proteins Target the Same Sites in Mitochondria of Arabidopsis thaliana
Daniil Verbitskiy et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2012)
Two Interacting Proteins Are Necessary for the Editing of the NdhD-1 Site in Arabidopsis Plastids
Clement Boussardon et al.
PLANT CELL (2012)
Multiple organellar RNA editing factor (MORF) family proteins are required for RNA editing in mitochondria and plastids of plants
Mizuki Takenaka et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
A Combinatorial Amino Acid Code for RNA Recognition by Pentatricopeptide Repeat Proteins
Alice Barkan et al.
PLOS GENETICS (2012)
Evolution of the deaminase fold and multiple origins of eukaryotic editing and mutagenic nucleic acid deaminases from bacterial toxin systems
Lakshminarayan M. Iyer et al.
NUCLEIC ACIDS RESEARCH (2011)
Experimental phasing with SHELXC/D/E: combining chain tracing with density modification
George M. Sheldrick
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY (2010)
XDS
Wolfgang Kabsch
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY (2010)
A hypothesis on the identification of the editing enzyme in plant organelles
Veronique Salone et al.
FEBS LETTERS (2007)
Conserved domain structure of pentatricopeptide repeat proteins involved in chloroplast RNA editing
Kenji Okuda et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
The Buccaneer software for automated model building.: 1.: Tracing protein chains
Kevin Cowtan
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY (2006)
The 1.48 Å resolution crystal structure of the homotetrameric cytidine deaminase from mouse
Aik-Hong Teh et al.
BIOCHEMISTRY (2006)
A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts
E Kotera et al.
NATURE (2005)
Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis
C Lurin et al.
PLANT CELL (2004)
Coot:: model-building tools for molecular graphics
P Emsley et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2004)
UCSF chimera - A visualization system for exploratory research and analysis
EF Pettersen et al.
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