相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Unraveling patterns of disrupted gene expression across a complex tissue
Kelsie E. Hunnicutt et al.
EVOLUTION (2022)
Providing a phylogenetic framework for trait-based analyses in brown algae: Phylogenomic tree inferred from 32 nuclear protein-coding sequences
Shingo Akita et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2022)
High rates of evolution preceded shifts to sex-biased gene expression in Leucadendron, the most sexually dimorphic angiosperms
Mathias Scharmann et al.
ELIFE (2021)
Evolution of life cycles and reproductive traits: Insights from the brown algae
Svenja Heesch et al.
JOURNAL OF EVOLUTIONARY BIOLOGY (2021)
A partially sex-reversed giant kelp sheds light into the mechanisms of sexual differentiation in a UV sexual system
Dieter G. Mueller et al.
NEW PHYTOLOGIST (2021)
Pathways to sex determination in plants: how many roads lead to Rome?
Guanqiao Feng et al.
CURRENT OPINION IN PLANT BIOLOGY (2020)
Sexual dimorphism and rapid turnover in gene expression in pre-reproductive seedlings of a dioecious herb
Guillaume G. Cossard et al.
ANNALS OF BOTANY (2019)
Sex-biased gene expression in flowers, but not leaves, reveals secondary sexual dimorphism in Populus balsamifera
Brian J. Sanderson et al.
NEW PHYTOLOGIST (2019)
Selection shapes turnover and magnitude of sex-biased expression in Drosophila gonads
Carrie A. Whittle et al.
BMC EVOLUTIONARY BIOLOGY (2019)
Origin and evolution of sex-determination systems in the brown algae
Susana M. Coelho et al.
NEW PHYTOLOGIST (2019)
The EMBL-EBI search and sequence analysis tools APIs in 2019
Fabio Madeira et al.
NUCLEIC ACIDS RESEARCH (2019)
A major role for noncoding regulatory mutations in the evolution of enzyme activity
David W. Loehlin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Conservation, acquisition, and functional impact of sex-biased gene expression in mammals
Sahin Naqvi et al.
SCIENCE (2019)
The genomic footprint of sexual conflict
Ahmed Sayadi et al.
NATURE ECOLOGY & EVOLUTION (2019)
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
Jaime Huerta-Cepas et al.
NUCLEIC ACIDS RESEARCH (2019)
OrthoFinder: phylogenetic orthology inference for comparative genomics
David M. Emms et al.
GENOME BIOLOGY (2019)
Temperature Modulates Sex-Biased Gene Expression in the Gametophytes of the Kelp Saccharina latissima
Catia Monteiro et al.
FRONTIERS IN MARINE SCIENCE (2019)
BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics
Robert M. Waterhouse et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
Evolution of Sex-Biased Gene Expression and Dosage Compensation in the Eye and Brain of Heliconius Butterflies
Ana Catalan et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
Patterns of Z chromosome divergence among Heliconius species highlight the importance of historical demography
Steven M. Van Belleghem et al.
MOLECULAR ECOLOGY (2018)
Slow evolution of sex-biased genes in the reproductive tissue of the dioecious plant Salix viminalis
Iulia Darolti et al.
MOLECULAR ECOLOGY (2018)
Gamete-mediated mate choice: towards a more inclusive view of sexual selection
Jukka Kekalainen et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2018)
UV Chromosomes and Haploid Sexual Systems
Susana Margarida Coelho et al.
TRENDS IN PLANT SCIENCE (2018)
Genetic constraints on microevolutionary divergence of sex-biased gene expression
Scott L. Allen et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2018)
Rapid evolution of female-biased genes among four species of Anopheles malaria mosquitoes
Francesco Papa et al.
GENOME RESEARCH (2017)
Global Dosage Compensation Is Ubiquitous in Lepidoptera, but Counteracted by the Masculinization of the Z Chromosome
Ann Kathrin Huylmans et al.
MOLECULAR BIOLOGY AND EVOLUTION (2017)
The transcriptional architecture of phenotypic dimorphism
Judith E. Mank
NATURE ECOLOGY & EVOLUTION (2017)
Differential evolutionary patterns and expression levels between sex-specific and somatic tissue-specific genes in peanut
Hui Song et al.
SCIENTIFIC REPORTS (2017)
Sex-Biased Gene Expression
Sonja Grath et al.
ANNUAL REVIEW OF GENETICS, VOL 50 (2016)
Both Male-Biased and Female-Biased Genes Evolve Faster in Fish Genomes
Liandong Yang et al.
GENOME BIOLOGY AND EVOLUTION (2016)
Transcriptomes of Plant Gametophytes Have a Higher Proportion of Rapidly Evolving and Young Genes than Sporophytes
Toni I. Gossmann et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
Inferring regulatory change from gene expression: the confounding effects of tissue scaling
Stephen H. Montgomery et al.
MOLECULAR ECOLOGY (2016)
Near-optimal probabilistic RNA-seq quantification
Nicolas L. Bray et al.
NATURE BIOTECHNOLOGY (2016)
Darwinian sex roles confirmed across the animal kingdom
Tim Janicke et al.
SCIENCE ADVANCES (2016)
Evolution of sex-biased gene expression in a dioecious plant
Niklaus Zemp et al.
NATURE PLANTS (2016)
Sexual Dimorphism and the Evolution of Sex-Biased Gene Expression in the Brown Alga Ectocarpus
Agnieszka Lipinska et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Sex-biased gene expression in dioecious garden asparagus (Asparagus officinalis)
Alex Harkess et al.
NEW PHYTOLOGIST (2015)
Sexual selection drives evolution and rapid turnover of male gene expression
Peter W. Harrison et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Saccharina genomes provide novel insight into kelp biology
Naihao Ye et al.
NATURE COMMUNICATIONS (2015)
Pre-zygotic isolation in the macroalgal genus Fucus from four contact zones spanning 100-10 000 years: a tale of reinforcement?
G. Hoarau et al.
ROYAL SOCIETY OPEN SCIENCE (2015)
Sex-Biased Gene Expression and Sexual Conflict throughout Development
Fiona C. Ingleby et al.
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Selection-Driven Evolution of Sex-Biased Genes Is Consistent with Sexual Selection in Arabidopsis thaliana
Toni I. Gossmann et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
The Ontogeny and Evolution of Sex-Biased Gene Expression in Drosophila melanogaster
Jennifer C. Perry et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Reduced selection and accumulation of deleterious mutations in genes exclusively expressed in men
Moran Gershoni et al.
NATURE COMMUNICATIONS (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
Sex-biased gene expression in the brown alga Fucus vesiculosus
Maria Joao F. Martins et al.
BMC GENOMICS (2013)
Genome-wide evidence for speciation with gene flow in Heliconius butterflies
Simon H. Martin et al.
GENOME RESEARCH (2013)
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
Brian J. Haas et al.
NATURE PROTOCOLS (2013)
The evolutionary causes and consequences of sex-biased gene expression
John Parsch et al.
NATURE REVIEWS GENETICS (2013)
Masculinization of Gene Expression Is Associated with Exaggeration of Male Sexual Dimorphism
Marie A. Pointer et al.
PLOS GENETICS (2013)
Rate of Amino Acid Substitution Is Influenced by the Degree and Conservation of Male-Biased Transcription Over 50 Myr of Drosophila Evolution
Sonja Grath et al.
GENOME BIOLOGY AND EVOLUTION (2012)
Sex-Biased Transcriptome Evolution in Drosophila
Raquel Assis et al.
GENOME BIOLOGY AND EVOLUTION (2012)
Anisogamy, chance and the evolution of sex roles
Lukas Schaerer et al.
TRENDS IN ECOLOGY & EVOLUTION (2012)
Faster-X Evolution of Gene Expression in Drosophila
Richard P. Meisel et al.
PLOS GENETICS (2012)
Driving south: a multi-gene phylogeny of the brown algal family Fucaceae reveals relationships and recent drivers of a marine radiation
Fernando G. Canovas et al.
BMC EVOLUTIONARY BIOLOGY (2011)
Towards a More Nuanced Understanding of the Relationship between Sex-Biased Gene Expression and Rates of Protein-Coding Sequence Evolution
Richard P. Meisel
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
The Cost of Sex: Quantifying Energetic Investment in Gamete Production by Males and Females
April Hayward et al.
PLOS ONE (2011)
Transcription Regulation of Sex-Biased Genes during Ontogeny in the Malaria Vector Anopheles gambiae
Kalle Magnusson et al.
PLOS ONE (2011)
EFFECTIVE POPULATION SIZE AND THE FASTER-X EFFECT: EMPIRICAL RESULTS AND THEIR INTERPRETATION
Judith E. Mank et al.
EVOLUTION (2010)
The Genetic Signature of Conditional Expression
J. David Van Dyken et al.
GENETICS (2010)
Sex-specific and lineage-specific alternative splicing in primates
Ran Blekhman et al.
GENOME RESEARCH (2010)
A multi-locus time-calibrated phylogeny of the brown algae (Heterokonta, Ochrophyta, Phaeophyceae): Investigating the evolutionary nature of the brown algal crown radiation
Thomas Silberfeld et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2010)
The Ectocarpus genome and the independent evolution of multicellularity in brown algae
J. Mark Cock et al.
NATURE (2010)
Development and application of SCAR markers for sex identification in the dioecious species Ginkgo biloba L.
Liqin Liao et al.
EUPHYTICA (2009)
A Problem With the Correlation Coefficient as a Measure of Gene Expression Divergence
Vini Pereira et al.
GENETICS (2009)
Dosage analysis of Z chromosome genes using microarray in silkworm, Bombyx mori
Xingfu Zha et al.
INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY (2009)
Systems genetics of complex traits in Drosophila melanogaster
Julien F. Ayroles et al.
NATURE GENETICS (2009)
Parental investment, sexual selection and sex ratios
Hanna Kokko et al.
JOURNAL OF EVOLUTIONARY BIOLOGY (2008)
Evolution of gene sequence and gene expression are not correlated in yeast
Itay Tirosh et al.
TRENDS IN GENETICS (2008)
Rapid evolution of female-biased, but not male-biased, genes expressed in the avian brain
Judith E. Mank et al.
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Constraint and turnover in sex-biased gene expression in the genus Drosophila
Yu Zhang et al.
NATURE (2007)
Hybridization and introgression in a mixed population of the intertidal seaweeds Fucus evanescens and F-serratus
J. A. Coyer et al.
JOURNAL OF EVOLUTIONARY BIOLOGY (2007)
Glacial refugia and recolonization pathways in the brown seaweed Fucus serratus
G. Hoarau et al.
MOLECULAR ECOLOGY (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Contrasting evolution of expression differences in the testis between species and subspecies of the house mouse
Christian Voolstra et al.
GENOME RESEARCH (2007)
The evolutionary significance of cis-regulatory mutations
Gregory A. Wray
NATURE REVIEWS GENETICS (2007)
The evolution of sex-biased genes and sex-biased gene expression
Hans Ellegren et al.
NATURE REVIEWS GENETICS (2007)
Tissue-specific expression and regulation of sexually dimorphic genes in mice
Xia Yang et al.
GENOME RESEARCH (2006)
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
Mikita Suyama et al.
NUCLEIC ACIDS RESEARCH (2006)
A mtDNA-based phylogeny of the brown algal genus Fucus (Heterokontophyta; Phaeophyta)
JA Coyer et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2006)
Simple and rapid RNA extraction from freeze-dried tissue of brown algae and seagrasses
G Pearson et al.
EUROPEAN JOURNAL OF PHYCOLOGY (2006)
Intergenomic conflict revealed by patterns of sex-biased gene expression
T Connallon et al.
TRENDS IN GENETICS (2005)
Genome-wide analysis of sex-enriched gene expression during C. elegans larval development
K Thoemke et al.
DEVELOPMENTAL BIOLOGY (2005)
Genetic isolation between three closely related taxa:: Fucus vesiculosus, F-Spiralis, and F-Ceranoides (Phaophyceae)
E Billard et al.
JOURNAL OF PHYCOLOGY (2005)
Male-biased mutation, sex linkage, and the rate of adaptive evolution
M Kirkpatrick et al.
EVOLUTION (2004)
Determining the affinities of salt marsh fucoids using microsatellite markers:: Evidence of hybridization and introgression between two species of fucus (Phaeophyta) in a Maine estuary
AL Wallace et al.
JOURNAL OF PHYCOLOGY (2004)
Molecular evolution of sex-biased genes in Drosophila
Z Zhang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2004)
Rapid evolution of male-biased gene expression in Drosophila
CD Meiklejohn et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Sex-dependent gene expression and evolution of the Drosophila transcriptome
JM Ranz et al.
SCIENCE (2003)
Paucity of genes on the Drosophila X chromosome showing male-biased expression
M Parisi et al.
SCIENCE (2003)
Hybridization of the marine seaweeds, Fucus serratus and Fucus evanescens (Heterokontophyta: Phaeophyceae) in a 100-year-old zone of secondary contact
JA Coyer et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2002)
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
K Katoh et al.
NUCLEIC ACIDS RESEARCH (2002)
Clustering of highly homologous sequences to reduce the size of large protein databases
WZ Li et al.
BIOINFORMATICS (2001)
Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
ZH Yang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2000)
分享论文
