4.5 Article

Remodeling of maternal mRNA through poly(A) tail orchestrates human oocyte-to-embryo transition

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Letter Biology

Comprehensive analysis of mRNA poly(A) tails by PAIso-seq2

Yusheng Liu et al.

SCIENCE CHINA-LIFE SCIENCES (2023)

Article Cell & Tissue Engineering

Human embryonic genome activation initiates at the one-cell stage

Maki Asami et al.

Summary: Human embryonic transcription initiates at the one-cell stage, sooner than previously thought, with both upregulation and downregulation of genes impacting early development processes.

CELL STEM CELL (2022)

Article Cell Biology

Epigenetic Reprogramming in Early Animal Development

Zhenhai Du et al.

Summary: The latest research findings on epigenetic reprogramming in gametogenesis and embryogenesis, as well as its impact on gamete maturation and parental-to-zygotic transition, are summarized in this review.

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2022)

Article Biochemical Research Methods

Transcriptome-wide measurement of poly(A) tail length and composition at subnanogram total RNA sensitivity by PAIso-seq

Yusheng Liu et al.

Summary: Poly(A) tails are added to mRNAs in a non-templated manner and play essential roles in post-transcriptional regulation. Measuring their length is critical for understanding their regulatory roles in biological and medical studies. The PAlso-seq method utilizes PacBio sequencing to accurately measure poly(A) tail length and non-A residues, enabling analysis of samples with limited input material.

NATURE PROTOCOLS (2022)

Article Multidisciplinary Sciences

Translatome and transcriptome co-profiling reveals a role of TPRXs in human zygotic genome activation

Zhuoning Zou et al.

Summary: This study utilized Ribo-lite and mRNA sequencing to analyze the transcriptome and translatome of human oocytes and early embryos. The results showed widespread differential translation during the oocyte-to-embryo transition (OET) and zygotic genome activation (ZGA), functioning in epigenetic reprogramming, transposon defense, and small RNA biogenesis. Additionally, TPRX1/2/L were identified as critical regulators of ZGA.

SCIENCE (2022)

Article Multidisciplinary Sciences

Single-cell transcriptome and translatome dual-omics reveals potential mechanisms of human oocyte maturation

Wenqi Hu et al.

Summary: This study developed a dual-omics methodology for analyzing the transcriptome and translatome of single-cell oocyte samples. The analysis revealed differences in translational expression patterns between mouse and human oocytes, and identified OOSP2 as an induction factor during human oocyte maturation.

NATURE COMMUNICATIONS (2022)

Article Medicine, Research & Experimental

Biallelic mutations in MOS cause female infertility characterized by human early embryonic arrest and fragmentation

Yin-Li Zhang et al.

Summary: Rare MOS variants were identified in infertile females with EEAF, leading to decreased ERK phosphorylation and disruption of maternal mRNA clearance related to mitochondrial function. Inactivation of the MOS-ERK signaling pathway drives EEAF by impairing oocyte cytoplasmic maturation in humans as shown in mice models.

EMBO MOLECULAR MEDICINE (2021)

Article Biochemical Research Methods

FLEP-seq: simultaneous detection of RNA polymerase II position, splicing status, polyadenylation site and poly(A) tail length at genome-wide scale by single-molecule nascent RNA sequencing

Yanping Long et al.

Summary: The FLEP-seq method allows simultaneous detection of RNA polymerase II position, splicing status, polyadenylation site, and poly(A) tail length in plants. It enables calculation of cotranscriptional splicing kinetics and identification of polyadenylated transcripts with unspliced introns at specific positions posttranscriptionally.

NATURE PROTOCOLS (2021)

Article Plant Sciences

An atlas of plant full-length RNA reveals tissue-specific and monocots-dicots conserved regulation of poly(A) tail length

Jinbu Jia et al.

Summary: This study profiles the poly(A) tail length in plants using a poly(A)-enrichment-free, nanopore-based method. The results show tissue-specific variations in poly(A) tail length, with pollen exhibiting a distinct pattern. The length of poly(A) tails is also regulated in a gene-specific manner, with mRNAs having short half-lives having longer poly(A) tails. Furthermore, the length of poly(A) tails in the nucleus is longer than in the cytoplasm. The comprehensive dataset provides a foundation for future studies on the regulation of poly(A) tail length in plants.

NATURE PLANTS (2021)

Article Biochemistry & Molecular Biology

Characterization of zygotic genome activation-dependent maternal mRNA clearance in mouse

Qian-Qian Sha et al.

NUCLEIC ACIDS RESEARCH (2020)

Article Biochemistry & Molecular Biology

The full-length transcriptome of C. elegans using direct RNA sequencing

Nathan P. Roach et al.

GENOME RESEARCH (2020)

Article Biochemistry & Molecular Biology

The Dynamics of Cytoplasmic mRNA Metabolism

Timothy J. Eisen et al.

MOLECULAR CELL (2020)

Article Genetics & Heredity

Homozygous Mutations in BTG4 Cause Zygotic Cleavage Failure and Female Infertility

Wei Zheng et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2020)

Article Genetics & Heredity

Mutations in NLRP2 and NLRP5 cause female infertility characterised by early embryonic arrest

Jian Mu et al.

JOURNAL OF MEDICAL GENETICS (2019)

Article Cell Biology

A pannexin 1 channelopathy causes human oocyte death

Qing Sang et al.

SCIENCE TRANSLATIONAL MEDICINE (2019)

Article Biochemistry & Molecular Biology

Comprehensive Integration of Single-Cell Data

Tim Stuart et al.

Article Multidisciplinary Sciences

Resetting histone modifications during human parental-to-zygotic transition

Weikun Xia et al.

SCIENCE (2019)

Article Biotechnology & Applied Microbiology

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome

Aaron M. Wenger et al.

NATURE BIOTECHNOLOGY (2019)

Article Biochemical Research Methods

FLAM-seq: full-length mRNA sequencing reveals principles of poly(A) tail length control

Ivano Legnini et al.

NATURE METHODS (2019)

Article Biochemical Research Methods

Nanopore native RNA sequencing of a human poly(A) transcriptome

Rachael E. Workman et al.

NATURE METHODS (2019)

Article Multidisciplinary Sciences

Key role for CTCF in establishing chromatin structure in human embryos

Xuepeng Chen et al.

NATURE (2019)

Article Genetics & Heredity

Homozygous Mutations in WEE2 Cause Fertilization Failure and Female Infertility

Qing Sang et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2018)

Article Biochemical Research Methods

Minimap2: pairwise alignment for nucleotide sequences

Heng Li

BIOINFORMATICS (2018)

Review Reproductive Biology

The oocyte-to-embryo transition in mouse: past, present, and future

Richard M. Schultz et al.

BIOLOGY OF REPRODUCTION (2018)

Article Biochemistry & Molecular Biology

Terminal Uridylyltransferases Execute Programmed Clearance of Maternal Transcriptome in Vertebrate Embryos

Hyeshik Chang et al.

MOLECULAR CELL (2018)

Article Obstetrics & Gynecology

Novel mutations in genes encoding subcortical maternal complex proteins may cause human embryonic developmental arrest

Xueqian Wang et al.

REPRODUCTIVE BIOMEDICINE ONLINE (2018)

Article Multidisciplinary Sciences

Mixed tailing by TENT4A and TENT4B shields mRNA from rapid deadenylation

Jaechul Lim et al.

SCIENCE (2018)

Review Genetics & Heredity

The Third Revolution in Sequencing Technology

Erwin L. van Dijk et al.

TRENDS IN GENETICS (2018)

Editorial Material Biochemistry & Molecular Biology

CNOT6L couples the selective degradation of maternal transcripts to meiotic cell cycle progression in mouse oocyte

Qian-Qian Sha et al.

EMBO JOURNAL (2018)

Article Biology

Role of Cnot6l in maternal mRNA turnover

Filip Horvat et al.

LIFE SCIENCE ALLIANCE (2018)

Article Genetics & Heredity

Female Infertility Caused by Mutations in the Oocyte-Specific Translational Repressor PATL2

Sateesh Maddirevula et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2017)

Article Genetics & Heredity

Biallelic Mutations in PATL2 Cause Female Infertility Characterized by Oocyte Maturation Arrest

Biaobang Chen et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2017)

Review Cell Biology

Zygotic Genome Activation in Vertebrates

David Jukam et al.

DEVELOPMENTAL CELL (2017)

Review Cell Biology

Cytoplasmic polyadenylation in mammalian oocyte maturation

Juan M. Reyes et al.

WILEY INTERDISCIPLINARY REVIEWS-RNA (2016)

Article Genetics & Heredity

Mutations in PADI6 Cause Female Infertility Characterized by Early Embryonic Arrest

Yao Xu et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2016)

Article Cell Biology

mTAIL-seq reveals dynamic poly(A) tail regulation in oocyte-to-embryo development

Jaechul Lim et al.

GENES & DEVELOPMENT (2016)

Article Biochemistry & Molecular Biology

BTG4 is a meiotic cell cycle-coupled maternal-zygotic transition licensing factor in oocytes

Chao Yu et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)

Article Medicine, General & Internal

Mutations in TUBB8 and Human Oocyte Meiotic Arrest

Ruizhi Feng et al.

NEW ENGLAND JOURNAL OF MEDICINE (2016)

Letter Cell Biology

BTG4 is a key regulator for maternal mRNA clearance during mouse early embryogenesis

Yusheng Liu et al.

JOURNAL OF MOLECULAR CELL BIOLOGY (2016)

Article Multidisciplinary Sciences

A survey of the sorghum transcriptome using single-molecule long reads

Salah E. Abdel-Ghany et al.

NATURE COMMUNICATIONS (2016)

Article Biochemistry & Molecular Biology

BTG4 is a meiotic cell cycle-coupled maternal-zygotic transition licensing factor in oocytes

Chao Yu et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)

Article Biochemistry & Molecular Biology

The BTG4 and CAF1 complex prevents the spontaneous activation of eggs by deadenylating maternal mRNAs

Michal Pasternak et al.

OPEN BIOLOGY (2016)

Article Developmental Biology

Identification of a human subcortical maternal complex

Kai Zhu et al.

MOLECULAR HUMAN REPRODUCTION (2015)

Article Biotechnology & Applied Microbiology

TLE6 mutation causes the earliest known human embryonic lethality

Anas M. Alazami et al.

GENOME BIOLOGY (2015)

Review Cell Biology

Zygotic Genome Activation During the Maternal-to-Zygotic Transition

Miler T. Lee et al.

ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY, VOL 30 (2014)

Article Biochemistry & Molecular Biology

Uridylation by TUT4 and TUT7 Marks mRNA for Degradation

Jaechul Lim et al.

Article Biochemistry & Molecular Biology

TAIL-seq: Genome-wide Determination of Poly(A) Tail Length and 3′ End Modifications

Hyeshik Chang et al.

MOLECULAR CELL (2014)

Article Multidisciplinary Sciences

Poly(A)-tail profiling reveals an embryonic switch in translational control

Alexander O. Subtelny et al.

NATURE (2014)

Article Multidisciplinary Sciences

The subcortical maternal complex controls symmetric division of mouse zygotes by regulating F-actin dynamics

Xing-Jiang Yu et al.

NATURE COMMUNICATIONS (2014)

Article Biochemistry & Molecular Biology

Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells

Liying Yan et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)

Article Multidisciplinary Sciences

Multiplex Genome Engineering Using CRISPR/Cas Systems

Le Cong et al.

SCIENCE (2013)

Article Biochemistry & Molecular Biology

Extensive alternative polyadenylation during zebrafish development

Igor Ulitsky et al.

GENOME RESEARCH (2012)

Review Biochemistry & Molecular Biology

Translational control by changes in poly(A) tail length: recycling mRNAs

Laure Weill et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2012)

Review Cell Biology

Control of poly(A) tail length

Christian R. Eckmann et al.

WILEY INTERDISCIPLINARY REVIEWS-RNA (2011)

Article Multidisciplinary Sciences

Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs

AJ Giraldez et al.

SCIENCE (2006)

Article Biochemistry & Molecular Biology

Acquisition of transcriptional competence in the 1-cell mouse embryo: Requirement for recruitment of maternal mRNAs

F Aoki et al.

MOLECULAR REPRODUCTION AND DEVELOPMENT (2003)