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Genomic epidemiology on the move

NATURE REVIEWS MICROBIOLOGY (2023)

Genomics, social media and mobile phone data enable mapping of SARS-CoV-2 lineages to inform health policy in Bangladesh

Lauren A. Cowley et al.

Summary: Genomic analysis in Bangladesh revealed the initial emergence and spread of SARS-CoV-2 lineages, with significant impact from population mobility and inter-city travel, highlighting the importance of monitoring viral diversity and controlling within-country movement to limit transmission rates.

NATURE MICROBIOLOGY (2021)

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Article Biotechnology & Applied Microbiology

Homopolish: a method for the removal of systematic errors in nanopore sequencing by homologous polishing

Yao-Ting Huang et al.

Summary: Homopolish, trained on homologous sequences, outperforms traditional methods in correcting Nanopore systematic errors and improving genome quality. When combined with other programs, it can achieve higher genome quality across various datasets. Nanopore-only sequencing has the potential to produce high-quality microbial genomes for downstream analysis.

GENOME BIOLOGY (2021)

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Article Virology

Portable Rabies Virus Sequencing in Canine Rabies Endemic Countries Using the Oxford Nanopore MinION

Crystal M. Gigante et al.

VIRUSES-BASEL (2020)

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Article Immunology

Nanopore Sequencing as a Rapidly Deployable Ebola Outbreak Tool

Thomas Hoenen et al.

EMERGING INFECTIOUS DISEASES (2016)

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Article Biology

A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer

Joshua Quick et al.

GIGASCIENCE (2014)

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Genomic epidemiology on the move

相关参考文献

Genomics, social media and mobile phone data enable mapping of SARS-CoV-2 lineages to inform health policy in Bangladesh

Homopolish: a method for the removal of systematic errors in nanopore sequencing by homologous polishing

Portable Rabies Virus Sequencing in Canine Rabies Endemic Countries Using the Oxford Nanopore MinION

Nanopore Sequencing as a Rapidly Deployable Ebola Outbreak Tool

A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer

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