4.7 Article

Transcriptomic analysis reveals distinct mechanisms of adaptation of a polar picophytoplankter under ocean acidification conditions

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Plant Sciences

A reduction in metabolism explains the tradeoffs associated with the long-term adaptation of phytoplankton to high CO2 concentrations

Peng Jin et al.

Summary: This study examined the long-term adaptive responses of phytoplankton to high CO2 conditions and found that it leads to a decrease in photosynthesis and respiration. The results also indicate that metabolism reduction plays an important role in the adaptive mechanisms of phytoplankton to climate change.

NEW PHYTOLOGIST (2022)

Review Marine & Freshwater Biology

Influence of global environmental Change on plankton

John A. Raven et al.

Summary: Recent research has shown that ocean acidification has profound consequences for plankton, affecting primary production and biogeochemistry. Additionally, changes in the nutritional value of phytoplankton due to acidification can impact the entire food chain. Researchers are also exploring the complex interactions between elevated CO2 and other environmental factors, as well as the effects of acidification and warming on inland water plankton.

JOURNAL OF PLANKTON RESEARCH (2021)

Article Biotechnology & Applied Microbiology

Transcriptomic analysis of hydrogen photoproduction in Chlorella pyrenoidosa under nitrogen deprivation

Ling Li et al.

ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS (2020)

Editorial Material Biochemistry & Molecular Biology

Photosynthesis in Phytoplankton: Insights from the Newly Discovered Biological Inorganic Carbon Pumps

Na Sui et al.

MOLECULAR PLANT (2020)

Review Biochemistry & Molecular Biology

Nutrient Control of mRNA Translation

Xin Erica Shu et al.

ANNUAL REVIEW OF NUTRITION, VOL 40, 2020 (2020)

Article Plant Sciences

Universal response pattern of phytoplankton growth rates to increasing CO2

Allanah J. Paul et al.

NEW PHYTOLOGIST (2020)

Article Multidisciplinary Sciences

Protein synthesis rates and ribosome occupancies reveal determinants of translation elongation rates

Andrea Riba et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Article Multidisciplinary Sciences

Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom

Sarah R. Smith et al.

NATURE COMMUNICATIONS (2019)

Article Marine & Freshwater Biology

A metabolomic approach to investigate effects of ocean acidification on a polar microalga Chlorella sp.

Yong-Hao Tan et al.

AQUATIC TOXICOLOGY (2019)

Article Biotechnology & Applied Microbiology

Identification of transcription factors involved in the phenotype of a domesticated oleaginous microalgae strain of Tisochrysis lutea

S. Thiriet-Rupert et al.

ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS (2018)

Article Geochemistry & Geophysics

Mechanisms and Pathways of Small-Phytoplankton Export from the Surface Ocean

Tammi L. Richardson

Annual Review of Marine Science (2018)

Review Genetics & Heredity

Post-transcriptional Regulatory Functions of Mammalian Pumilio Proteins

Aaron C. Goldstrohm et al.

TRENDS IN GENETICS (2018)

Article Microbiology

Driverse CO2-Induced Responses in Physiology and Gene Expresssion among Eukaryotic Phytoplankton

Gwenn M. M. Hennon et al.

FRONTIERS IN MICROBIOLOGY (2017)

Article Multidisciplinary Sciences

Simulated ocean acidification reveals winners and losers in coastal phytoplankton

Lennart T. Bach et al.

PLOS ONE (2017)

Article Plant Sciences

The ins and outs of CO2

John A. Raven et al.

JOURNAL OF EXPERIMENTAL BOTANY (2016)

Article Biochemistry & Molecular Biology

FK506-Binding Proteins and Their Diverse Functions

Mingming Tong et al.

CURRENT MOLECULAR PHARMACOLOGY (2016)

Article Biotechnology & Applied Microbiology

Ostreococcus tauri is a new model green alga for studying iron metabolism in eukaryotic phytoplankton

Gaelle Lelandais et al.

BMC GENOMICS (2016)

Article Geosciences, Multidisciplinary

Anthropogenic carbon release rate unprecedented during the past 66 million years

Richard E. Zeebe et al.

NATURE GEOSCIENCE (2016)

Article Multidisciplinary Sciences

Ocean acidification reduces transfer of essential biomolecules in a natural plankton community

J. Rafael Bermudez et al.

SCIENTIFIC REPORTS (2016)

Article Biochemistry & Molecular Biology

ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap

Tauno Metsalu et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Oceanography

Response of Photosynthesis to Ocean Acidification

Katherine R. M. Mackey et al.

OCEANOGRAPHY (2015)

Article Environmental Sciences

Diatom acclimation to elevated CO2 via cAMP signalling and coordinated gene expression

Gwenn M. M. Hennon et al.

NATURE CLIMATE CHANGE (2015)

Article Environmental Sciences

Impact of ocean acidification on the structure of future phytoplankton communities

Stephanie Dutkiewicz et al.

NATURE CLIMATE CHANGE (2015)

Article Biotechnology & Applied Microbiology

Elevated CO2 and Phosphate Limitation Favor Micromonas pusilla through Stimulated Growth and Reduced Viral Impact

Douwe S. Maat et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Multidisciplinary Sciences

Global covariation of carbon turnover times with climate in terrestrial ecosystems

Nuno Carvalhais et al.

NATURE (2014)

Article Biochemistry & Molecular Biology

RefSeq: an update on mammalian reference sequences

Kim D. Pruitt et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Multidisciplinary Sciences

Heterocyst-specific flavodiiron protein Flv3B enables oxic diazotrophic growth of the filamentous cyanobacterium Anabaena sp. PCC 7120

Maria Ermakova et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Plant Sciences

Rubisco is a small fraction of total protein in marine phytoplankton

Jenna L. Losh et al.

NEW PHYTOLOGIST (2013)

Article Multidisciplinary Sciences

Ocean Acidification Reduces Growth and Calcification in a Marine Dinoflagellate

Dedmer B. Van de Waal et al.

PLOS ONE (2013)

Article Environmental Sciences

The impact of temperature on marine phytoplankton resource allocation and metabolism

A. Toseland et al.

NATURE CLIMATE CHANGE (2013)

Article Microbiology

The response of marine picoplankton to ocean acidification

Lindsay K. Newbold et al.

ENVIRONMENTAL MICROBIOLOGY (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Biochemistry & Molecular Biology

Structure and activity of the only human RNase T2

Andrea Thorn et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biotechnology & Applied Microbiology

The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation

Guillaume Blanc et al.

GENOME BIOLOGY (2012)

Review Geochemistry & Geophysics

Carbon Concentrating Mechanisms in Eukaryotic Marine Phytoplankton

John R. Reinfelder

ANNUAL REVIEW OF MARINE SCIENCE, VOL 3 (2011)

Review Biochemistry & Molecular Biology

Light-harvesting and structural organization of Photosystem II: From individual complexes to thylakoid membrane

Roberta Croce et al.

JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY (2011)

Article Biotechnology & Applied Microbiology

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Manfred G. Grabherr et al.

NATURE BIOTECHNOLOGY (2011)

Review Cell Biology

From unwinding to clamping - the DEAD box RNA helicase family

Patrick Linder et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2011)

Article Biochemical Research Methods

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan et al.

BIOINFORMATICS (2010)

Review Plant Sciences

Structural and functional diversification of the light-harvesting complexes in photosynthetic eukaryotes

Jonathan A. D. Neilson et al.

PHOTOSYNTHESIS RESEARCH (2010)

Review Plant Sciences

Genomic insights into photosynthesis in eukaryotic phytoplankton

Giovanni Finazzi et al.

TRENDS IN PLANT SCIENCE (2010)

Review Plant Sciences

Chlorophyll biosynthesis: spotlight on protochlorophyllide reduction

Christiane Reinbothe et al.

TRENDS IN PLANT SCIENCE (2010)

Article Biotechnology & Applied Microbiology

A scaling normalization method for differential expression analysis of RNA-seq data

Mark D. Robinson et al.

GENOME BIOLOGY (2010)

Article Biochemical Research Methods

BLAST plus : architecture and applications

Christiam Camacho et al.

BMC BIOINFORMATICS (2009)

Article Oceanography

Climatological mean and decadal change in surface ocean pCO2, and net sea-air CO2 flux over the global oceans

Taro Takahashi et al.

DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY (2009)

Article Biochemical Research Methods

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

Da Wei Huang et al.

NATURE PROTOCOLS (2009)

Review Multidisciplinary Sciences

Glycine cleavage system: reaction mechanism, physiological significance, and hyperglycinemia

Goro Kikuchi et al.

PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES (2008)

Article Multidisciplinary Sciences

The Chlamydomonas genome reveals the evolution of key animal and plant functions

Sabeeha S. Merchant et al.

SCIENCE (2007)

Review Chemistry, Multidisciplinary

The marine inorganic carbon cycle

Frank J. Millero

CHEMICAL REVIEWS (2007)

Review Biochemistry & Molecular Biology

Making light work of enzyme catalysis: protochlorophyllide oxidoreductase

DJ Heyes et al.

TRENDS IN BIOCHEMICAL SCIENCES (2005)

Article Plant Sciences

Nitric oxide generation upon growth of Antarctic Chlorella sp cells

MS Estevez et al.

PHYSIOLOGIA PLANTARUM (2005)

Article Environmental Sciences

Bicarbonate uptake by Southern Ocean phytoplankton

N Cassar et al.

GLOBAL BIOGEOCHEMICAL CYCLES (2004)

Article Environmental Sciences

Antioxidative role of nitric oxide on copper toxicity to a chlorophycean alga, Chlorella

AK Singh et al.

ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY (2004)

Article Biochemistry & Molecular Biology

Genes encoding a-type flavoproteins are essential for photoreduction of O2 in cyanobacteria

Y Helman et al.

CURRENT BIOLOGY (2003)

Article Biochemistry & Molecular Biology

The structure of photosystem II in Arabidopsis:: Localization of the CP26 and CP29 antenna complexes

AE Yakushevska et al.

BIOCHEMISTRY (2003)

Article Biochemistry & Molecular Biology

Protochlorophyllide oxidoreductase: A homology model examined by site-directed mutagenesis

HE Townley et al.

PROTEINS-STRUCTURE FUNCTION AND GENETICS (2001)

Article Biochemistry & Molecular Biology

The COG database: new developments in phylogenetic classification of proteins from complete genomes

RL Tatusov et al.

NUCLEIC ACIDS RESEARCH (2001)

Article Biology

The water-water cycle as alternative photon and electron sinks

K Asada

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES (2000)

Article Biochemistry & Molecular Biology

KEGG: Kyoto Encyclopedia of Genes and Genomes

M Kanehisa et al.

NUCLEIC ACIDS RESEARCH (2000)