4.3 Review

Natural history collections as a resource for conservation genomics: Understanding the past to preserve the future

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Cell Biology

The Ocean Genome Legacy: A Genomic Resource Repository for Marine Life

Rosalia Falco et al.

BIOPRESERVATION AND BIOBANKING (2022)

Article Ecology

Utilizing museomics to trace the complex history and species boundaries in an avian-study system of conservation concern

Mario Ernst et al.

Summary: Accurate taxonomic classification is crucial for conservation and genomics provides powerful tools for understanding evolutionary relationships. This study used museum specimens to trace the evolutionary history and species boundaries of an Asian oriole clade. The results confirmed the species status of the silver oriole and highlighted the need for taxonomic revision of the maroon oriole forms.

HEREDITY (2022)

Article Biochemistry & Molecular Biology

Conservation genomics and systematics of a near-extinct island radiation

Anna M. Kearns et al.

Summary: Genomics plays a crucial role in conservation, providing insights into the impacts of population declines, inbreeding, loss of genetic variation and hybridization. This study used ancient DNA methods to investigate the population dynamics of the near-extinct Mariana Islands reedwarbler radiation, highlighting the importance of conservation genomics studies for understanding and managing threatened populations.

MOLECULAR ECOLOGY (2022)

Editorial Material Multidisciplinary Sciences

The Earth BioGenome Project 2020: Starting the clock

Harris A. Lewin et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2022)

Review Ecology

Ancient and historical DNA in conservation policy

Evelyn L. Jensen et al.

Summary: Genetic diversity, including ancient and historical DNA, plays a crucial role in biodiversity conservation. However, it has not been adequately incorporated into conservation policies and regulations. Utilizing genetic information from ancient and historical specimens can help resolve key conservation issues and assist countries in meeting their obligations under the Convention on Biological Diversity (CBD).

TRENDS IN ECOLOGY & EVOLUTION (2022)

Article Multidisciplinary Sciences

Genomic basis for skin phenotype and cold adaptation in the extinct Steller's sea cow

Diana Le Duc et al.

Summary: Steller's sea cow, an extinct mammal, had genetic adaptations to cold aquatic environments and showed convergent evolution with cetaceans. Environmental changes also played a role in their extinction.

SCIENCE ADVANCES (2022)

Article Biochemistry & Molecular Biology

Response to Bakker et al.

Jacqueline A. Robinson et al.

CURRENT BIOLOGY (2022)

Article Multidisciplinary Sciences

Rapid weed adaptation and range expansion in response to agriculture over the past two centuries

Julia M. Kreiner et al.

Summary: This study uses genome analysis of the common waterhemp to demonstrate the significant impact of modern agriculture and agricultural intensification on the evolution of agricultural weeds. The strong selection pressure and changes in allele frequency trajectories since the 1960s have influenced the success of this weed in the 21st century, with human-mediated range shifts playing a role.

SCIENCE (2022)

Review Ecology

Linking evolutionary potential to extinction risk: applications and future directions

Brenna R. Forester et al.

Summary: Extinction-risk assessments are crucial for prioritizing conservation action, but quantifying extinction risk, especially incorporating evolutionary potential, is challenging. Disregarding evolutionary potential can lead to inadequate resource allocation and recovery planning. Fortunately, proxies for evolutionary potential can be estimated from environmental, phenotypic, and genetic data.

FRONTIERS IN ECOLOGY AND THE ENVIRONMENT (2022)

Article Ecology

Museum specimens: An overlooked and valuable material for conservation genetics

Naoyuki Nakahama

Summary: Museum specimens contain genetic information from when they were collected, and the technical difficulty of genetic analysis requires the use of new methods. Museum specimens are of great value for conservation genetic studies.

ECOLOGICAL RESEARCH (2021)

Article Evolutionary Biology

The influence of spatially heterogeneous anthropogenic change on bill size evolution in a coastal songbird

Phred M. Benham et al.

Summary: This study examined bill morphology variation to assess bird responses to ecological changes. The results showed that birds from higher salinity tidal marshes exhibited an increase in bill surface area, with only the coastal subspecies showing a significant increase in bill size over time. The spatial and temporal variation in bill size observed in this study align with the hypothesis that larger bills are favored in freshwater-limited environments.

EVOLUTIONARY APPLICATIONS (2021)

Article Multidisciplinary Sciences

Genetic barcoding of museum eggshell improves data integrity of avian biological collections

Alicia Grealy et al.

Summary: The study demonstrates the feasibility of using an optimized drilling technique to extract sufficient DNA for genetic identification from even the smallest museum eggshells. Additionally, the method was successfully applied to resolve a 53-year-old ornithological controversy regarding the identification of purported Paradise Parrot eggs collected after the species' accepted extinction date.

SCIENTIFIC REPORTS (2021)

Article Evolutionary Biology

Physiological Genomics of Adaptation to High-Altitude Hypoxia

Jay F. Storz et al.

Summary: Population genomic studies on high-altitude adaptation have generated hypotheses about genes and pathways, but experimental tests are needed to identify causal mechanisms. Moving from candidate genes to phenotypic targets is challenging, as genotype-phenotype associations may reflect secondary consequences of changes in other traits linked via homeostatic regulation. Recent research on high-altitude models has revealed plastic and evolved changes in respiratory, cardiovascular, and metabolic traits affecting aerobic performance capacity in hypoxia.

ANNUAL REVIEW OF ANIMAL BIOSCIENCES, VOL 9, 2021 (2021)

Article Evolutionary Biology

Strongly deleterious mutations are a primary determinant of extinction risk due to inbreeding depression

Christopher C. Kyriazis et al.

Summary: Human-driven habitat fragmentation and loss have resulted in small and isolated plant and animal populations facing high risk of extinction, mainly due to inbreeding depression. While the traditional approach for managing these populations involves maintaining high genetic diversity, recent research suggests that minimizing strongly deleterious variation may be more important in reducing extinction risk.

EVOLUTION LETTERS (2021)

Article Multidisciplinary Sciences

Bird nests as botanical time capsules: DNA barcoding identifies the contents of contemporary and historical nests

Alex Rinkert et al.

Summary: Bird nests in natural history collections are a valuable but underutilized source of genetic information. By sequencing the nuclear ribosomal internal transcribed spacer, researchers were able to identify plant species used as nest material, with successful sequencing correlated with higher sample and DNA quality. This molecular approach allows for the identification of plant species without physically dissecting the nest specimens, and holds great promise for future ecological studies using nest specimens.

PLOS ONE (2021)

Article Multidisciplinary Sciences

The crucial role of genome-wide genetic variation in conservation

Marty Kardos et al.

Summary: Conserving genome-wide genetic variation is generally the best approach to prevent inbreeding depression and loss of adaptive potential, while focusing on functional genetic variation is not always feasible and can often lead to misleading and counterproductive outcomes.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)

Article Multidisciplinary Sciences

The inflated significance of neutral genetic diversity in conservation genetics

Joao C. Teixeira et al.

Summary: Conservation genetics aims to evaluate population health and extinction risk based on genetic diversity levels, but neutral genetic diversity is not the only factor affecting species extinction risk. A deeper understanding of functional genetic diversity, demographic history, and ecological relationships is necessary for developing effective conservation genetic strategies.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)

Article Biology

The demography of extinction in eastern North American birds

Brian Tilston Smith et al.

Summary: Species are disappearing at an unprecedented rate during the Anthropocene. Extinct bird species showed lower genetic diversity and population sizes compared to extant species, but both extinct and non-extinct birds had similar demographic histories, suggesting that overall population declines during the Pleistocene did not drive their extinction in the Anthropocene.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2021)

Article Multidisciplinary Sciences

Exposure to climate change drives stability or collapse of desert mammal and bird communities

E. A. Riddell et al.

Summary: The study found that small mammal communities in the Mojave Desert remained relatively stable, while bird populations declined significantly in response to warming and drying. This difference in response may be attributed to the different microhabitat use of birds and mammals.

SCIENCE (2021)

Review Ecology

Mining museums for historical DNA: advances and challenges in museomics

Christopher J. Raxworthy et al.

Summary: Historical DNA obtained from museum and herbarium specimens provides new insights into organisms' evolutionary history, such as documenting genetic erosion and extinction, discovering unknown species, resolving evolutionary relationships, studying epigenetic effects, and determining origins of infectious diseases. However, the development of best practices in isolating, processing, and analyzing historical DNA remains underexplored due to the diversity of specimen preparation types and collecting histories.

TRENDS IN ECOLOGY & EVOLUTION (2021)

Article Biochemistry & Molecular Biology

Genome-wide diversity in the California condor tracks its prehistoric abundance and decline

Jacqueline A. Robinson et al.

Summary: The study focused on the genome of the California condor, Andean condor, and turkey vulture, revealing that the California condor genome retains a high degree of variation due to its historically high abundance. Correlations between genome-wide diversity and recombination rate suggest a history of purifying selection against linked deleterious alleles, providing a promising foundation for future restoration efforts.

CURRENT BIOLOGY (2021)

Article Multidisciplinary Sciences

Towards complete and error-free genome assemblies of all vertebrate species

Arang Rhie et al.

Summary: The Vertebrate Genome Project and the international Genome 10K consortium have collaborated to generate high-quality genome assemblies for 16 species representing six major vertebrate lineages, leading to new biological discoveries. Long-read sequencing technologies are essential for maximizing genome quality, and addressing complex repeats and haplotype heterozygosity are crucial for reducing assembly errors and improving completeness of reference genomes. The lessons learned from this project have paved the way for the Vertebrate Genomes Project (VGP), an international effort to generate high-quality, complete reference genomes for all known vertebrate species.

NATURE (2021)

Article Multidisciplinary Sciences

Genomic stability through time despite decades of in cod on both sides of the Atlantic

Malin L. Pinsky et al.

Summary: This study compared whole-genome sequence data of Atlantic cod from two geographically distinct populations and found that genetic diversity did not substantially decline and effective population sizes remained high after periods of intensive exploitation and rapid decline. The research suggests that phenotypic change in these populations is not constrained by irreversible loss of genomic variation.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)

Article Multidisciplinary Sciences

People have shaped most of terrestrial nature for at least 12,000 years

Erle C. Ellis et al.

Summary: Archaeological and paleoecological evidence suggest that human societies have been using ecologically transformative land use practices since 10,000 BCE, shaping nearly three quarters of Earth's land by that time. The current biodiversity crisis is not primarily caused by the loss of uninhabited wildlands, but rather from the appropriation, colonization, and intensifying use of biodiverse cultural landscapes long shaped and sustained by prior societies. Recognizing the deep cultural connection with biodiversity will be crucial in resolving the crisis.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)

Article Ecology

Resilience: insights from the US LongTerm Ecological Research Network

Jane Cowles et al.

Summary: Ecosystems are undergoing complex and unpredictable changes, and long-term research is crucial for analyzing these changes. This paper, based on stories from the U.S. National Science Foundation funded Long-Term Ecological Research network, highlights the discussion on the resilience theme of ecosystems. These stories underscore the importance of long-term studies in addressing complex ecological topics and demonstrate how the diversity of sites within the LTER network facilitates the emergence of overarching concepts about important drivers of ecosystem structure, function, services, and futures.

ECOSPHERE (2021)

Review Genetics & Heredity

Museum Genomics

Daren C. Card et al.

Summary: Natural history collections serve as valuable repositories of biological information, aiding research in ecology, evolutionary biology, extinct organisms, and the impact of human activities on biodiversity through genomics research. However, utilizing genomics in biological collections presents challenges in digitizing, integrating, and sharing data, highlighting the need for updated practices to ensure optimal data extraction.

ANNUAL REVIEW OF GENETICS, VOL 55 (2021)

Article Biochemistry & Molecular Biology

Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum)

Fatima Sanchez-Barreiro et al.

Summary: Large vertebrates, such as the white rhinoceros, have experienced significant decline in populations due to human activities. Genetic data from resequenced white rhinoceros genomes show a decrease in genomic diversity and increase in inbreeding coefficients, especially in the northern white rhinoceros (NWR) and the southern white rhinoceros (SWR). Despite the genetic impacts, the surviving SWR does not show a significant accumulation of genetic load compared to its historical counterpart. These findings have implications for informing conservation efforts for white rhinoceros populations.

MOLECULAR ECOLOGY (2021)

Article Biochemistry & Molecular Biology

Disentangling adaptation from drift in bottlenecked and reintroduced populations of Alpine ibex

Deborah M. Leigh et al.

Summary: Identifying local adaptation in bottlenecked species is crucial, and methods for detecting selection play an important role in species management and response to climate change. However, distinguishing selection signals from genetic drift in bottlenecked populations is challenging. This study used simulations to evaluate the accuracy of selection detection methods in Alpine ibex populations, finding high false positive rates but improved accuracy when combining multiple methods.

MOLECULAR ECOLOGY RESOURCES (2021)

Article Multidisciplinary Sciences

Museum genomics reveals the rapid decline and extinction of Australian rodents since European settlement

Emily Roycroft et al.

Summary: Australia has the highest historically recorded rate of mammalian extinction, especially among rodents. Through genomic data and museum specimens, researchers reveal genetic diversity, evolutionary history, and evidence of rapid extinction in extinct species.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)

Review Ecology

Shape-shifting: changing animal morphologies as a response to climatic warming

Sara Ryding et al.

Summary: Animal appendages like avian beaks and mammalian ears can dissipate excess body heat, with animals in warmer climates typically having larger appendages for more efficient heat exchange. In response to climate change and warming, endotherms may undergo 'shape-shifting' in appendage size. Temperature is found to be a strong predictor of morphological change in endotherms, either independently or in combination with other environmental factors.

TRENDS IN ECOLOGY & EVOLUTION (2021)

Article Biochemistry & Molecular Biology

More than skin and bones: Comparing extraction methods and alternative sources of DNA from avian museum specimens

Whitney L. E. Tsai et al.

MOLECULAR ECOLOGY RESOURCES (2020)

Article Biochemistry & Molecular Biology

Evolutionary History, Genomic Adaptation to Toxic Diet, and Extinction of the Carolina Parakeet

Pere Gelabert et al.

CURRENT BIOLOGY (2020)

Article Biochemistry & Molecular Biology

Genomic and Fitness Consequences of Genetic Rescue in Wild Populations

Sarah W. Fitzpatrick et al.

CURRENT BIOLOGY (2020)

Article Biochemistry & Molecular Biology

Inferring the Demographic History of Inbred Species from Genome-Wide SNP Frequency Data

Paul D. Blischak et al.

MOLECULAR BIOLOGY AND EVOLUTION (2020)

Article Biochemistry & Molecular Biology

Museomics identifies genetic erosion in two butterfly species across the 20th century in Finland

Jeremy Gauthier et al.

MOLECULAR ECOLOGY RESOURCES (2020)

Review Ecology

Genomic Prediction of (Mal)Adaptation Across Current and Future Climatic Landscapes

Thibaut Capblancq et al.

ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 51, 2020 (2020)

Editorial Material Biochemistry & Molecular Biology

Genomics of natural history collections for understanding evolution in the wild

Lua Lopez et al.

MOLECULAR ECOLOGY RESOURCES (2020)

Article Multidisciplinary Sciences

Dense sampling of bird diversity increases power of comparative genomics

Shaohong Feng et al.

NATURE (2020)

Review Plant Sciences

Using herbaria to study global environmental change

Patricia L. M. Lang et al.

NEW PHYTOLOGIST (2019)

Editorial Material Biodiversity Conservation

Conservation of adaptive potential and functional diversity

A. Rus Hoelzel et al.

CONSERVATION GENETICS (2019)

Article Biochemistry & Molecular Biology

A chromosome-scale assembly of the axolotl genome

Jeramiah J. Smith et al.

GENOME RESEARCH (2019)

Article Biochemistry & Molecular Biology

Phenotypic and genetic introgression across a moving woodpecker hybrid zone

Shawn M. Billerman et al.

MOLECULAR ECOLOGY (2019)

Review Genetics & Heredity

Ancient pathogen genomics as an emerging tool for infectious disease research

Maria A. Spyrou et al.

NATURE REVIEWS GENETICS (2019)

Article Multidisciplinary Sciences

Genomic signatures of extensive inbreeding in Isle Royale wolves, a population on the threshold of extinction

Jacqueline A. Robinson et al.

SCIENCE ADVANCES (2019)

Review Ecology

The Exciting Potential and Remaining Uncertainties of Genetic Rescue

Donovan A. Bell et al.

TRENDS IN ECOLOGY & EVOLUTION (2019)

Article Genetics & Heredity

Inference of Population Structure from Time-Series Genotype Data

Tyler A. Joseph et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2019)

Article Genetics & Heredity

The Linked Selection Signature of Rapid Adaptation in Temporal Genomic Data

Vince Buffalo et al.

GENETICS (2019)

Article Multidisciplinary Sciences

Cryptic diversity of a widespread global pathogen reveals expanded threats to amphibian conservation

Allison Q. Byrne et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Article Biodiversity Conservation

Genetic rescue and the maintenance of native ancestry

Kelley Harris et al.

CONSERVATION GENETICS (2019)

Article Biochemistry & Molecular Biology

Historical Genomes Reveal the Genomic Consequences of Recent Population Decline in Eastern Gorillas

Tom van der Valk et al.

CURRENT BIOLOGY (2019)

Review Biology

Museum specimens of terrestrial vertebrates are sensitive indicators of environmental change in the Anthropocene

C. Jonathan Schmitt et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2019)

Article Genetics & Heredity

Estimating recent migration and population-size surfaces

Hussein Al-Asadi et al.

PLOS GENETICS (2019)

Article Biochemistry & Molecular Biology

BaitsTools: Software for hybridization capture bait design

Michael G. Campana

MOLECULAR ECOLOGY RESOURCES (2018)

Article Ecology

Genomic basis and evolutionary potential for extreme drought adaptation in Arabidopsis thaliana

Moises Exposito-Alonso et al.

NATURE ECOLOGY & EVOLUTION (2018)

Article Evolutionary Biology

Genome Sequencing of Museum Specimens Reveals Rapid Changes in the Genetic Composition of Honey Bees in California

Julie M. Cridland et al.

GENOME BIOLOGY AND EVOLUTION (2018)

Article Biochemistry & Molecular Biology

Rapid genetic adaptation to a novel environment despite a genome-wide reduction in genetic diversity

Janna R. Willoughby et al.

MOLECULAR ECOLOGY (2018)

Review Genetics & Heredity

Runs of homozygosity: windows into population history and trait architecture

Francisco C. Ceballos et al.

NATURE REVIEWS GENETICS (2018)

Article Multidisciplinary Sciences

Recent Asian origin of chytrid fungi causing global amphibian declines

Simon J. O'Hanlon et al.

SCIENCE (2018)

Review Ecology

Breaking Barriers: Causes, Consequences, and Experimental Utility of Human-Mediated Hybridization

Kathryn C. Grabenstein et al.

TRENDS IN ECOLOGY & EVOLUTION (2018)

Article Genetics & Heredity

The rate and potential relevance of new mutations in a colonizing plant lineage

Moises Exposito-Alonso et al.

PLOS GENETICS (2018)

Review Ecology

Using Genomic Data to Infer Historic Population Dynamics of Nonmodel Organisms

Annabel C. Beichman et al.

ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 49 (2018)

Review Cell Biology

Inference of population history using coalescent HMMs: review and outlook

Jeffrey P. Spence et al.

CURRENT OPINION IN GENETICS & DEVELOPMENT (2018)

Review Biotechnology & Applied Microbiology

Conservation of biodiversity in the genomics era

Megan A. Supple et al.

GENOME BIOLOGY (2018)

Article Biochemistry & Molecular Biology

Breaking RAD: an evaluation of the utility of restriction site-associated DNA sequencing for genome scans of adaptation

David B. Lowry et al.

MOLECULAR ECOLOGY RESOURCES (2017)

Article Genetics & Heredity

Inferring Demographic History Using Two-Locus Statistics

Aaron P. Ragsdale et al.

GENETICS (2017)

Editorial Material Biochemistry & Molecular Biology

Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations

Julian M. Catchen et al.

MOLECULAR ECOLOGY RESOURCES (2017)

Article Biochemistry & Molecular Biology

Phylogenomics using formalin-fixed and 100+year-old intractable natural history specimens

Sara Ruane et al.

MOLECULAR ECOLOGY RESOURCES (2017)

Article Multidisciplinary Sciences

Survival and divergence in a small group: The extraordinary genomic history of the endangered Apennine brown bear stragglers

Andrea Benazzo et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Review Ecology

Revisiting Adaptive Potential, Population Size, and Conservation

Ary A. Hoffmann et al.

TRENDS IN ECOLOGY & EVOLUTION (2017)

Article Genetics & Heredity

Inferring Demographic History Using Two-Locus Statistics

Aaron P. Ragsdale et al.

GENETICS (2017)

Letter Immunology

White-Nose Syndrome Fungus in a 1918 Bat Specimen from France

Michael G. Campana et al.

EMERGING INFECTIOUS DISEASES (2017)

Article Biochemical Research Methods

PHYLUCE is a software package for the analysis of conserved genomic loci

Brant C. Faircloth

BIOINFORMATICS (2016)

Review Biochemistry & Molecular Biology

Methods to characterize selective sweeps using time serial samples: an ancient DNA perspective

Anna-Sapfo Malaspinas

MOLECULAR ECOLOGY (2016)

Article Biochemistry & Molecular Biology

Targeted capture in evolutionary and ecological genomics

Matthew R. Jones et al.

MOLECULAR ECOLOGY (2016)

Article Biochemistry & Molecular Biology

Sequence capture of ultraconserved elements from bird museum specimens

John E. McCormack et al.

MOLECULAR ECOLOGY RESOURCES (2016)

Letter Biochemistry & Molecular Biology

Plasmodium falciparum malaria in 1st-2nd century CE southern Italy

Stephanie Marciniak et al.

CURRENT BIOLOGY (2016)

Article Biochemistry & Molecular Biology

Genomic Consequences of Population Decline in the Endangered Florida Scrub-Jay

Nancy Chen et al.

CURRENT BIOLOGY (2016)

Article Biochemistry & Molecular Biology

Direct estimate of the rate of germline mutation in a bird

Linnea Smeds et al.

GENOME RESEARCH (2016)

Review Biochemistry & Molecular Biology

Natural history collections as windows on evolutionary processes

Michael W. Holmes et al.

MOLECULAR ECOLOGY (2016)

Article Biochemistry & Molecular Biology

A genomic perspective on hybridization and speciation

Bret A. Payseur et al.

MOLECULAR ECOLOGY (2016)

Article Multidisciplinary Sciences

Tempo and mode of genome evolution in a 50,000-generation experiment

Olivier Tenaillon et al.

NATURE (2016)

Review Genetics & Heredity

Harnessing the power of RADseq for ecological and evolutionary genomics

Kimberly R. Andrews et al.

NATURE REVIEWS GENETICS (2016)

Review Multidisciplinary Sciences

Improving the forecast for biodiversity under climate change

M. C. Urban et al.

SCIENCE (2016)

Article Plant Sciences

Retrieval of hundreds of nuclear loci from herbarium specimens

Michelle L. Hart et al.

Review Ecology

Understanding Inbreeding Depression, Purging, and Genetic Rescue

Philip W. Hedrick et al.

TRENDS IN ECOLOGY & EVOLUTION (2016)

Article Genetics & Heredity

Accurate Non-parametric Estimation of Recent Effective Population Size from Segments of Identity by Descent

Sharon R. Browning et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2015)

Article Multidisciplinary Sciences

Evolution of Darwin's finches and their beaks revealed by genome sequencing

Sangeet Lamichhaney et al.

NATURE (2015)

Article Multidisciplinary Sciences

Fundamental limits on the accuracy of demographic inference based on the sample frequency spectrum

Jonathan Terhorst et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Multidisciplinary Sciences

Accelerating extinction risk from climate change

Mark C. Urban

SCIENCE (2015)

Review Ecology

Conservation archaeogenomics: ancient DNA and biodiversity in the Anthropocene

Courtney A. Hofman et al.

TRENDS IN ECOLOGY & EVOLUTION (2015)

Article Ecology

Genomics and the challenging translation into conservation practice

Aaron B. A. Shafer et al.

TRENDS IN ECOLOGY & EVOLUTION (2015)

Article Biology

Spatially heterogeneous impact of climate change on small mammals of montane California

Kevin C. Rowe et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2015)

Article Evolutionary Biology

Sampling strategies for frequency spectrum-based population genomic inference

John D. Robinson et al.

BMC EVOLUTIONARY BIOLOGY (2014)

Article Biochemistry & Molecular Biology

Direct Estimates of Natural Selection in Iberia Indicate Calcium Absorption Was Not the Only Driver of Lactase Persistence in Europe

Oddny Osk Sverrisdottir et al.

MOLECULAR BIOLOGY AND EVOLUTION (2014)

Article Genetics & Heredity

Inferring human population size and separation history from multiple genome sequences

Stephan Schiffels et al.

NATURE GENETICS (2014)

Article Biotechnology & Applied Microbiology

Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species

Shengbin Li et al.

GENOME BIOLOGY (2014)

Article Biochemistry & Molecular Biology

Unlocking the vault: next-generation museum population genomics

Ke Bi et al.

MOLECULAR ECOLOGY (2013)

Review Genetics & Heredity

Understanding the origin of species with genome-scale data: modelling gene flow

Vitor Sousa et al.

NATURE REVIEWS GENETICS (2013)

Article Biochemistry & Molecular Biology

The Geography of Recent Genetic Ancestry across Europe

Peter Ralph et al.

PLOS BIOLOGY (2013)

Article Biodiversity Conservation

The push and pull of climate change causes heterogeneous shifts in avian elevational ranges

Morgan W. Tingley et al.

GLOBAL CHANGE BIOLOGY (2012)

Article Biochemistry & Molecular Biology

Ancient DNA Reveals Genetic Stability Despite Demographic Decline: 3,000 Years of Population History in the Endemic Hawaiian Petrel

Andreanna J. Welch et al.

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Article Evolutionary Biology

Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales

Brant C. Faircloth et al.

SYSTEMATIC BIOLOGY (2012)

Article Ecology

Harnessing genomics for delineating conservation units

W. Chris Funk et al.

TRENDS IN ECOLOGY & EVOLUTION (2012)

Article Biodiversity Conservation

Predicting the Probability of Outbreeding Depression

Richard Frankham et al.

CONSERVATION BIOLOGY (2011)

Article Multidisciplinary Sciences

Inference of human population history from individual whole-genome sequences

Heng Li et al.

NATURE (2011)

Article Multidisciplinary Sciences

A draft genome of Yersinia pestis from victims of the Black Death

Kirsten I. Bos et al.

NATURE (2011)

Review Genetics & Heredity

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

John W. Davey et al.

NATURE REVIEWS GENETICS (2011)

Article Multidisciplinary Sciences

Ancient host specificity within a single species of brood parasitic bird

Claire N. Spottiswoode et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Review Ecology

Divergence with Gene Flow: Models and Data

Catarina Pinho et al.

ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 41 (2010)

Review Genetics & Heredity

Genomics and the future of conservation genetics

Fred W. Allendorf et al.

NATURE REVIEWS GENETICS (2010)

Article Multidisciplinary Sciences

Resolving postglacial phylogeography using high-throughput sequencing

Kevin J. Emerson et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Review Multidisciplinary Sciences

Scenarios for Global Biodiversity in the 21st Century

Henrique M. Pereira et al.

SCIENCE (2010)

Article Biology

Hybridization rapidly reduces fitness of a native trout in the wild

Clint C. Muhlfeld et al.

BIOLOGY LETTERS (2009)

Review Biochemistry & Molecular Biology

Statistical inferences in phylogeography

Rasmus Nielsen et al.

MOLECULAR ECOLOGY (2009)

Review Biochemistry & Molecular Biology

Ancient DNA applications for wildlife conservation

Jennifer A. Leonard

MOLECULAR ECOLOGY (2008)

Article Multidisciplinary Sciences

Are we in the midst of the sixth mass extinction? A view from the world of amphibians

David B. Wake et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Review Ecology

Adaptation from standing genetic variation

Rowan D. H. Barrett et al.

TRENDS IN ECOLOGY & EVOLUTION (2008)

Review Ecology

Back to the future: museum specimens in population genetics

Peter Wandeler et al.

TRENDS IN ECOLOGY & EVOLUTION (2007)

Review Biodiversity Conservation

Evidence for the role of infectious disease in species extinction and endangerment

Katherine F. Smith et al.

CONSERVATION BIOLOGY (2006)

Review Biodiversity Conservation

Genetics and extinction

R Frankham

BIOLOGICAL CONSERVATION (2005)

Article Biochemistry & Molecular Biology

Legacy lost: genetic variability and population size of extirpated US grey wolves (Canis lupus)

JA Leonard et al.

MOLECULAR ECOLOGY (2005)

Review Ecology

The alluring simplicity and complex reality of genetic rescue

DA Tallmon et al.

TRENDS IN ECOLOGY & EVOLUTION (2004)

Review Genetics & Heredity

Genetic analyses from ancient DNA

S Paabo et al.

ANNUAL REVIEW OF GENETICS (2004)

Article Multidisciplinary Sciences

Low potential for climatic stress adaptation in a rainforest Drosophila species

AA Hoffmann et al.

SCIENCE (2003)

Review Ecology

The utility of single nucleotide polymorphisms in inferences of population history

RT Brumfield et al.

TRENDS IN ECOLOGY & EVOLUTION (2003)

Article Multidisciplinary Sciences

Prehistoric decline of genetic diversity in the nene

EE Paxinos et al.

SCIENCE (2002)

Review Ecology

Inbreeding effects in wild populations

LF Keller et al.

TRENDS IN ECOLOGY & EVOLUTION (2002)

Review Genetics & Heredity

Ancient DNA

M Hofreiter et al.

NATURE REVIEWS GENETICS (2001)

Article Multidisciplinary Sciences

Conservation biology - 'Ghost' alleles of the Mauritius kestrel

JJ Groombridge et al.

NATURE (2000)