The distinct microbial community patterns and pathogen transmission routes in intensive care units

While the microbiome in indoor environments such as hospitals has drawn increasing attention, the transmission routes especially for pathogens in ICUs remain largely unexamined. In this study, we have explored the distinct bacterial communities of ICU compared with Non-ICU in hospital wards. We have then clarified their different transmission patterns by means of microbial source tracking, with results suggesting that bedrail and inside floor were hubs in two wards, respectively. Streptococcus, Staphylococcus were identified as Transfer-Easy taxa that were found in both ICU and Non-ICU settings, with potential pathogenicity and cases recorded. We have also detected another 15 pathogenic genera in hospital environment, including Pseudomonas and Acinetobacter, and charted how these pathogenic microorganisms affect patients, demonstrating that there were far more strong routes for pathogens transmitted from environment to patients in ICU. In summary, this work investigates patterns of bacterial transmission in hospital settings, highlights pathogenic genera that are likely to transfer from the environment to humans and cause nosocomial infection, which could provide guidance for healthcare system monitoring and co-infection avoidance.

Automated summary

This study examines the different bacterial communities in ICU and Non-ICU hospital wards and clarifies their transmission patterns. It finds that ICU settings have more routes for pathogen transmission from the environment to patients, and identifies several pathogenic genera that are likely to cause nosocomial infections.