4.4 Review

Wholegenome sequencing as the gold standard approach for control of Listeria monocytogenes in the food chain

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biotechnology & Applied Microbiology

Whole-Genome Sequencing Analysis of Listeria monocytogenes from Rural, Urban, and Farm Environments in Norway: Genetic Diversity, Persistence, and Relation to Clinical and Food Isolates

Annette Fagerlund et al.

Summary: Listeria monocytogenes is a deadly foodborne pathogen that is widespread in the environment. Whole-genome sequencing (WGS) is used to show the persistence of L. monocytogenes in natural, urban, and dairy farm environments. Clusters of almost identical isolates can be collected from geographically and temporally unrelated sources, highlighting the importance of understanding the genetic relationships between clinical isolates and L. monocytogenes isolates from various environments. The study emphasizes the need for reliable tools for source tracking, surveillance, and risk assessment in managing L. monocytogenes.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2022)

Review Microbiology

Landscape of Stress Response and Virulence Genes Among Listeria monocytogenes Strains

Brankica Z. Lakicevic et al.

Summary: This review provides an up-to-date overview of clonal and serotype-specific differences among Listeria monocytogenes strains, emphasizing the genes and genomic islands responsible for virulence and resistance to environmental stresses. It also highlights the use of advanced diagnostic technologies, such as whole-genome sequencing, for better control of listeriosis.

FRONTIERS IN MICROBIOLOGY (2022)

Article Microbiology

Genetic Diversity and Relationships of Listeria monocytogenes Serogroup IIa Isolated in Poland

Beata Lachtara et al.

Summary: The present study characterized 100 L. monocytogenes isolates of serogroup IIa from food and food production environments in Poland, revealing their pathogenic potential and ability to survive in adverse conditions. Molecular analysis showed close relation with previously isolated L. monocytogenes strains in Poland.

MICROORGANISMS (2022)

Article Biotechnology & Applied Microbiology

Genomic Markers for Quaternary Ammonium Compound Resistance as a Persistence Indicator for Listeria monocytogenes Contamination in Food Manufacturing Environments

Ashley L. Cooper et al.

Summary: Persistent contamination of food manufacturing environments by Listeria monocytogenes poses a significant public health risk, as standard sanitization protocols may not be effective due to bacterial resistance mechanisms such as the bcrABC gene cassette. Whole genome sequencing analysis identified the bcrABC cassette in a substantial portion of isolates, particularly associated with specific clonal complexes. This research provides food testing laboratories with methods to characterize isolates and risk managers with tools to assess the potential for persistent contamination and the efficacy of mitigation actions.

JOURNAL OF FOOD PROTECTION (2021)

Article Microbiology

Comparative Analysis of Genetic Determinants Encoding Cadmium, Arsenic, and Benzalkonium Chloride Resistance in Listeria monocytogenes of Human, Food, and Environmental Origin

Tereza Gelbicova et al.

Summary: The environmental adaptation of Listeria monocytogenes involves complex mechanisms contributing to their survival and spread in the environment, leading to the development of listeriosis. Analysis of whole-genome sequencing data revealed that genes encoding cadmium, arsenic, and benzalkonium chloride resistance were predominantly located on mobile genetic elements and could horizontally spread across different lineages. Certain serotypes and clonal complexes showed a relationship between the spread of resistance genes and the need for further study to understand their adaptation in food production environments.

FRONTIERS IN MICROBIOLOGY (2021)

Article Biotechnology & Applied Microbiology

Genomic diversity and characterization of Listeria monocytogenes from dry-cured ham processing plants

Aida Perez-Baltar et al.

Summary: Genomic diversity of Listeria monocytogenes isolates from deboning and slicing areas in three dry-cured ham processing plants was analyzed. Different serogroups, pulsotypes, and sequence types were identified, along with premature stop codons associated with attenuated virulence and features related to biofilm formation and increased tolerance to compounds. The study suggests the need for control measures and cleaning protocols to eliminate the pathogen effectively in the processing environment.

FOOD MICROBIOLOGY (2021)

Article Food Science & Technology

Incidence and genetic variability of Listeria monocytogenes isolated from vegetables in Poland

Elzbieta Mackiw et al.

Summary: The study found that the prevalence of Listeria monocytogenes in vegetable products available in Poland was generally low, with most isolates being susceptible to antimicrobial agents and harboring virulence-associated genes. Different serogroups, restriction profiles, and clonal complexes revealed the diversity of L. monocytogenes isolates in the samples collected over the years.

INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2021)

Article Food Science & Technology

Unraveling the emergence and population diversity of Listeria monocytogenes in a newly built meat facility through whole genome sequencing

Adrian Alvarez-Molina et al.

Summary: The study conducted sampling and analysis of the food processing environment of a newly opened meat processing facility, identifying an increase in Listeria monocytogenes isolation frequency and sequence type diversity over time. Persistent strains were observed in the environment, suggesting clonal expansion and persistence of certain strains with attenuated virulence potential and plasmid presence. The analysis also showed that ST9 strains isolated were more closely related to European isolates than North American isolates and more frequently linked to meat and pork products in Europe.

INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2021)

Article Microbiology

Hypo- and Hyper-Virulent Listeria monocytogenes Clones Persisting in Two Different Food Processing Plants of Central Italy

Fabrizia Guidi et al.

Summary: A study was conducted on 66 Listeria monocytogenes (Lm) strains isolated from a small-scale meat processing plant and a dairy facility in Central Italy from 2013 to 2018. Whole Genome Sequencing and bioinformatics analysis revealed genetic relationships between the strains, persistence, and virulence abilities. The study found that CC9 and CC121 strains in the meat processing plant were more adapted to the environment and showed higher biofilm production, while the CC2 strains in the dairy facility persisted for a longer period of time.

MICROORGANISMS (2021)

Article Immunology

Genomic Determinants of Pathogenicity and Antimicrobial Resistance for 60 Global Listeria monocytogenes Isolates Responsible for Invasive Infections

Dawei Shi et al.

Summary: This study conducted a comparative genomic analysis of 60 Listeria monocytogenes strains from five continents, revealing diverse virulence and antimicrobial resistance features among Chinese and worldwide isolates. Significant clonal diversity was highlighted, emphasizing the need for improved clinical therapeutic strategies.

FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2021)

Article Biotechnology & Applied Microbiology

Genomic insights into persistence of Listeria species in the food processing environment

L. Palaiodimou et al.

Summary: This study identified key genetic markers related to persistence of Listeria strains, such as disinfectant resistance markers and stress tolerance markers. Persistent strains were more likely to contain mutations associated with hypovirulence. The results suggest that no single genetic marker is universally responsible for a strain's ability to persist.

JOURNAL OF APPLIED MICROBIOLOGY (2021)

Article Food Science & Technology

Study of the transfer of Listeria monocytogenes during the slaughter of cattle using molecular typing

Niels Demaitre et al.

Summary: Genetic characterization was used to investigate the introduction, transmission, and persistence of Listeria monocytogenes in Belgian beef slaughterhouses. The study found a high presence of the pathogen on the hide of incoming animals, confirming pathogen transfer via cross-contamination. Despite successful containment of contamination from hide to carcass in most slaughterhouses, persistence along the slaughter line remains a significant challenge.

MEAT SCIENCE (2021)

Article Food Science & Technology

The European Union One Health 2020 Zoonoses Report

Summary: The report reviews zoonoses monitoring activities in EU Member States and non-member states in 2020, emphasizing the high reporting rates of campylobacteriosis and salmonellosis in humans and the detection of Salmonella in meat products. Additionally, the report provides updates on various diseases.

EFSA JOURNAL (2021)

Article Microbiology

Whole Genome-Based Characterization of Listeria monocytogenes Isolates Recovered From the Food Chain in South Africa

Thendo Mafuna et al.

Summary: Listeria monocytogenes strains in South Africa were characterized for their genetic relatedness, virulence profiles, stress tolerance, and resistance genes. ST1, ST2, and ST204 showed adaptability in food processing environments with resistance to Benzalkonium chloride, stress tolerance genes, and biofilm formation associated genes. Strains with hyper-virulent potential were ST1, ST2, and ST204, posing a major public health risk due to their association with meat products and food processing environments in South Africa.

FRONTIERS IN MICROBIOLOGY (2021)

Article Food Science & Technology

Intensive Environmental Surveillance Plan for Listeria monocytogenes in Food Producing Plants and Retail Stores of Central Italy: Prevalence and Genetic Diversity

Gabriella Centorotola et al.

Summary: An intensive environmental monitoring study was conducted in Central Italy to investigate the genetic diversity and stress resistance profiles of Listeria monocytogenes (Lm) in food processing environments. The study identified different MLST clones with varying distribution frequencies in FPEs, with some strains persisting after sanitation. The application of whole genome sequencing analysis of Lm isolates from environmental samples could aid in surveillance and early outbreak detection.
Article Immunology

Listeriosis Caused by Persistence of Listeria monocytogenes Serotype 4b Sequence Type 6 in Cheese Production Environment

Magdalena Nuesch-Inderbinen et al.

Summary: A nationwide outbreak of human listeriosis in Switzerland was linked to the persistent environmental contamination of a cheese dairy with a specific type of Listeria monocytogenes. Whole-genome sequencing was utilized to match clinical isolates with samples from the cheese and production environment.

EMERGING INFECTIOUS DISEASES (2021)

Article Food Science & Technology

Genetic Diversity of Listeria monocytogenes Isolates from Invasive Listeriosis in China

Yuelan Yin et al.

FOODBORNE PATHOGENS AND DISEASE (2020)

Article Food Science & Technology

Interference of the acid stress on the expression of llsX by Listeria monocytogenes pathogenic island 3 (LIPI-3) variants

Rafaela de Melo Tavares et al.

FOOD RESEARCH INTERNATIONAL (2020)

Article Biotechnology & Applied Microbiology

Virulence characterization and comparative genomics of Listeria monocytogenes sequence type 155 strains

Eva Wagner et al.

BMC GENOMICS (2020)

Article Biochemistry & Molecular Biology

Whole-Genome Sequencing-Based Characterization of Listeria monocytogenes from Fish and Fish Production Environments in Poland

Kinga Wieczorek et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2020)

Review Biotechnology & Applied Microbiology

The use of next generation sequencing for improving food safety: Translation into practice

Balamurugan Jagadeesan et al.

FOOD MICROBIOLOGY (2019)

Article Food Science & Technology

Use of Whole-Genome Sequencing for Food Safety and Public Health in the United States

Eric Brown et al.

FOODBORNE PATHOGENS AND DISEASE (2019)

Review Public, Environmental & Occupational Health

Whole Genome Sequencing Based Surveillance of L. monocytogenes for Early Detection and Investigations of Listeriosis Outbreaks

Ariane Pietzka et al.

FRONTIERS IN PUBLIC HEALTH (2019)

Article Microbiology

Isolate-Based Surveillance of Listeria monocytogenes by Whole Genome Sequencing in Austria

Adriana Cabal et al.

FRONTIERS IN MICROBIOLOGY (2019)

Article Public, Environmental & Occupational Health

PulseNet and the Changing Paradigm of Laboratory-Based Surveillance for Foodborne Diseases

Kristy A. Kubota et al.

PUBLIC HEALTH REPORTS (2019)

Article Food Science & Technology

Next generation of microbiological risk assessment: Potential of omics data for exposure assessment

Heidy M. W. den Besten et al.

INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2018)

Review Biotechnology & Applied Microbiology

Genomic and phenotypic diversity of Listeria monocytogenes clonal complexes associated with human listeriosis

Teresa M. Bergholz et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2018)

Article Public, Environmental & Occupational Health

An outbreak of listeriosis linked to turkey meat products in the Czech Republic, 2012-2016

T. Gelbicova et al.

EPIDEMIOLOGY AND INFECTION (2018)

Article Food Science & Technology

Next generation microbiological risk assessment-Potential of omics data for hazard characterisation

Nabila Haddad et al.

INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2018)

Article Biotechnology & Applied Microbiology

A Comparative Study of the Susceptibility of Listeria Species Sanitizer Treatments When Grown under Planktonic and Biofilm Conditions

Laura Luque-Sastre et al.

JOURNAL OF FOOD PROTECTION (2018)

Article Biotechnology & Applied Microbiology

Stress survival islet 1 contributes to serotype-specific differences in biofilm formation in Listeria monocytogenes

K. Keeney et al.

LETTERS IN APPLIED MICROBIOLOGY (2018)

Article Genetics & Heredity

Epistatic control of intrinsic resistance by virulence genes in Listeria

Mariela Scortti et al.

PLOS GENETICS (2018)

Article Environmental Sciences

A quantitative microbial risk assessment model for Listeria monocytogenes in RTE sandwiches

E. Tirloni et al.

MICROBIAL RISK ANALYSIS (2018)

Article Biotechnology & Applied Microbiology

Novel Cadmium Resistance Determinant in Listeria monocytogenes

Cameron Parsons et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2017)

Review Food Science & Technology

Listeria monocytogenes in retail establishments: Contamination routes and control strategies

Brankica Lakicevic et al.

FOOD REVIEWS INTERNATIONAL (2017)

Article Food Science & Technology

Tracking of Listeria monocytogenes in meat establishment using Whole Genome Sequencing as a food safety management tool: A proof of concept

Ivan Nastasijevic et al.

INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2017)

Article Biotechnology & Applied Microbiology

Evaluation of Third-Party Deep Cleaning as a Listeria monocytogenes Control Strategy in Retail Delis

Susan R. Hammons et al.

JOURNAL OF FOOD PROTECTION (2017)

Article Biotechnology & Applied Microbiology

Enhanced Sanitation Standard Operating Procedures Have Limited Impact on Listeria monocytogenes Prevalence in Retail Delis

Andrea J. Etter et al.

JOURNAL OF FOOD PROTECTION (2017)

Review Microbiology

Food Safety in the Age of Next Generation Sequencing, Bioinformatics, and Open Data Access

Eduardo N. Taboada et al.

FRONTIERS IN MICROBIOLOGY (2017)

Article Infectious Diseases

Benzalkonium tolerance genes and outcome in Listeria monocytogenes meningitis

P. H. C. Kremer et al.

CLINICAL MICROBIOLOGY AND INFECTION (2017)

Article Biotechnology & Applied Microbiology

Tolerance of Listeria monocytogenes to Quaternary Ammonium Sanitizers Is Mediated by a Novel Efflux Pump Encoded by emrE

Jovana Kovacevic et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)

Article Microbiology

Prospective Whole-Genome Sequencing Enhances National Surveillance of Listeria monocytogenes

Jason C. Kwong et al.

JOURNAL OF CLINICAL MICROBIOLOGY (2016)

Article Infectious Diseases

Two listeria outbreaks caused by smoked fish consumption-using whole-genome sequencing for outbreak investigations

S. Gillesberg Lassen et al.

CLINICAL MICROBIOLOGY AND INFECTION (2016)

Article Biotechnology & Applied Microbiology

Use of Whole Genome Sequencing and Patient Interviews To Link a Case of Sporadic Listeriosis to Consumption of Prepackaged Lettuce

K. A. Jackson et al.

JOURNAL OF FOOD PROTECTION (2016)

Article Biotechnology & Applied Microbiology

Foodborne Bacterial Pathogens in Retail Prepacked Ready-to-Eat Mixed Ingredient Salads

Karin Soderqvist et al.

JOURNAL OF FOOD PROTECTION (2016)

Article Biotechnology & Applied Microbiology

Prevalence and Level of Listeria monocytogenes in Ice Cream Linked to a Listeriosis Outbreak in the United States

Yi Chen et al.

JOURNAL OF FOOD PROTECTION (2016)

Article Genetics & Heredity

Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity

Mylene M. Maury et al.

NATURE GENETICS (2016)

Article Microbiology

Comparative Genomics of the Listeria monocytogenes ST204 Subgroup

Edward M. Fox et al.

FRONTIERS IN MICROBIOLOGY (2016)

Article Public, Environmental & Occupational Health

Outbreak of Listeriosis Associated with Consumption of Packaged Salad - United States and Canada, 2015-2016

Julie L. Self et al.

MMWR-MORBIDITY AND MORTALITY WEEKLY REPORT (2016)

Article Multidisciplinary Sciences

Listeria monocytogenes sequence type 1 is predominant in ruminant rhombencephalitis

Margaux Dreyer et al.

SCIENTIFIC REPORTS (2016)

Article Biotechnology & Applied Microbiology

Development of ListeriaBase and comparative analysis of Listeria monocytogenes

Mui Fern Tan et al.

BMC GENOMICS (2015)

Review Environmental Sciences

Food Safety in Low and Middle Income Countries

Delia Grace

INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH (2015)

Article Biotechnology & Applied Microbiology

Listeria monocytogenes and Listeria spp. Contamination Patterns in Retail Delicatessen Establishments in Three US States

Courtenay Simmons et al.

JOURNAL OF FOOD PROTECTION (2014)

Review Biochemistry & Molecular Biology

Omics approaches in food safety: fulfilling the promise?

Teresa M. Bergholz et al.

TRENDS IN MICROBIOLOGY (2014)

Article Biotechnology & Applied Microbiology

Conservation and Distribution of the Benzalkonium Chloride Resistance Cassette bcrABC in Listeria monocytogenes

Vikrant Dutta et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)

Article Biotechnology & Applied Microbiology

Coselection of Cadmium and Benzalkonium Chloride Resistance in Conjugative Transfers from Nonpathogenic Listeria spp. to Other Listeriae

S. Katharios-Lanwermeyer et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)

Review Food Science & Technology

'Omics' technologies in quantitative microbial risk assessment

S. Brul et al.

TRENDS IN FOOD SCIENCE & TECHNOLOGY (2012)

Article Biotechnology & Applied Microbiology

Variation in Listeria monocytogenes Dose Responses in Relation to Subtypes Encoding a Full-Length or Truncated Internalin A

Yuhuan Chen et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)

Review Microbiology

Listeria monocytogenes lineages: Genomics, evolution, ecology, and phenotypic characteristics

Renato H. Orsi et al.

INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY (2011)

Article Biotechnology & Applied Microbiology

A Targeted Multilocus Genotyping Assay for Lineage, Serogroup, and Epidemic Clone Typing of Listeria monocytogenes

Todd J. Ward et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)

Article Biotechnology & Applied Microbiology

High-throughput genome sequencing of two Listeria monocytogenes clinical isolates during a large foodborne outbreak

Matthew W. Gilmour et al.

BMC GENOMICS (2010)

Article Biotechnology & Applied Microbiology

A five-gene stress survival islet (SSI-1) that contributes to the growth of Listeria monocytogenes in suboptimal conditions

S. Ryan et al.

JOURNAL OF APPLIED MICROBIOLOGY (2010)

Article Food Science & Technology

Susceptibility of Listeria monocytogenes from traditional cheese-dairies to in-use sanitizers

Antonio Lourenco et al.

FOOD CONTROL (2009)

Article Biotechnology & Applied Microbiology

Prevalence and Molecular Diversity of Listeria monocytogenes in Retail Establishments

Brian D. Sauders et al.

JOURNAL OF FOOD PROTECTION (2009)

Article Biotechnology & Applied Microbiology

Multilocus Genotyping Assays for Single Nucleotide Polymorphism-Based Subtyping of Listeria monocytogenes Isolates

Todd J. Ward et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)

Article Biotechnology & Applied Microbiology

The growth limits of a large number of Listeria monocytogenes strains at combinations of stresses show serotype- and niche-specific traits

S. van der Veen et al.

JOURNAL OF APPLIED MICROBIOLOGY (2008)

Article Microbiology

A new perspective on Listeria monocytogenes evolution

Marie Ragon et al.

PLOS PATHOGENS (2008)

Article Public, Environmental & Occupational Health

Survey on the Listeria contamination of ready-to-eat food products and household environments in Vienna, Austria

M. Wagner et al.

ZOONOSES AND PUBLIC HEALTH (2007)

Article Biotechnology & Applied Microbiology

Resistance of Listeria monocytogenes biofilms to sanitizing agents in a simulated food processing environment

Y. Pan et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)

Article Biotechnology & Applied Microbiology

Transfer of Listeria monocytogenes during mechanical slicing of turkey breast, bologna, and salami

KL Vorst et al.

JOURNAL OF FOOD PROTECTION (2006)

Review Food Science & Technology

The cost and benefit of Listeria monocytogenes food safety measures

R Ivanek et al.

CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION (2004)

Article Biotechnology & Applied Microbiology

Variation in biofilm formation among strains of Listeria monocytogenes

MK Borucki et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)

Article Food Science & Technology

Adaptive and cross-adaptive responses of persistent and non-persistent Listeria monocytogenes strains to disinfectants

J Lundén et al.

INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2003)

Article Biotechnology & Applied Microbiology

Detection of Listeria in crawfish processing plants and in raw, whole crawfish and processed crawfish (Procambarus spp.)

J Thimothe et al.

JOURNAL OF FOOD PROTECTION (2002)

Article Food Science & Technology

Occurrence of and a possible mechanism for resistance to a quaternary ammonium compound in Listeria monocytogenes

B Aase et al.

INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2000)

Article Biotechnology & Applied Microbiology

Persistent Listeria monocytogenes strains show enhanced adherence to food contact surface after short contact times

JM Lunden et al.

JOURNAL OF FOOD PROTECTION (2000)