相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Delineating the conformational landscape of the adenosine A2A receptor during G protein coupling
Shuya Kate Huang et al.
CELL (2021)
Allosteric regulation of the nickel-responsive NikR transcription factor from Helicobacter pylori
Karina A. Baksh et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2021)
Allosteric control of metal-responsive transcriptional regulators in bacteria
Karina A. Baksh et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2020)
The impact of a His-tag on DNA binding by RNA polymerase alpha-C-terminal domain from Helicobacter pylori
Navjit K. Paul et al.
PROTEIN EXPRESSION AND PURIFICATION (2020)
Substrate-Based Allosteric Regulation of a Homodimeric Enzyme
Pedram Mehrabi et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2019)
BeStSel: a web server for accurate protein secondary structure prediction and fold recognition from the circular dichroism spectra
Andras Micsonai et al.
NUCLEIC ACIDS RESEARCH (2018)
Mechanistic insights into allosteric regulation of the A(2A) adenosine G protein-coupled receptor by physiological cations
Libin Ye et al.
NATURE COMMUNICATIONS (2018)
Tuning site-specific dynamics to drive allosteric activation in a pneumococcal zinc uptake regulator
Daiana A. Capdevila et al.
ELIFE (2018)
Metallochaperones and metalloregulation in bacteria
Daiana A. Capdevila et al.
BIOINORGANIC CHEMISTRY (2017)
Survival of Helicobacter pylori in gastric acidic territory
Shamshul Ansari et al.
HELICOBACTER (2017)
Metal homeostasis and resistance in bacteria
Pete Chandrangsu et al.
NATURE REVIEWS MICROBIOLOGY (2017)
Entropy redistribution controls allostery in a metalloregulatory protein
Daiana A. Capdevila et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
The role of dimer asymmetry and protomer dynamics in enzyme catalysis
Tae Hun Kim et al.
SCIENCE (2017)
Comprehensive mapping of the Helicobacter pylori NikR regulon provides new insights in bacterial nickel responses
Andrea Vannini et al.
SCIENTIFIC REPORTS (2017)
Tuning the Flexibility of Glycine-Serine Linkers To Allow Rational Design of Multidomain Proteins
Martijn van Rosmalen et al.
BIOCHEMISTRY (2017)
Surface plasmon resonance and isothermal titration calorimetry to monitor the Ni(II)-dependent binding of Helicobacter pylori NikR to DNA
Edoardo Fabini et al.
ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2016)
Transition Metals and Virulence in Bacteria
Lauren D. Palmer et al.
ANNUAL REVIEW OF GENETICS, VOL 50 (2016)
Protein Ensembles: How Does Nature Harness Thermodynamic Fluctuations for Life? The Diverse Functional Roles of Conformational Ensembles in the Cell
Guanghong Wei et al.
CHEMICAL REVIEWS (2016)
The Role of Protein Loops and Linkers in Conformational Dynamics and Allostery
Elena Papaleo et al.
CHEMICAL REVIEWS (2016)
On the interaction of Helicobacter pylori NikR, a Ni(II)-responsive transcription factor, with the urease operator: in solution and in silico studies
Luca Mazzei et al.
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY (2015)
Nickel-responsive regulation of two novel Helicobacter pylori NikR-targeted genes
M. D. Jones et al.
METALLOMICS (2015)
Accurate secondary structure prediction and fold recognition for circular dichroism spectroscopy
Andras Micsonai et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Helicobacter pylori-induced gastric inflammation and gastric cancer
Fei Wang et al.
CANCER LETTERS (2014)
Metal Preferences and Metallation
Andrew W. Foster et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2014)
The ensemble nature of allostery
Hesam N. Motlagh et al.
NATURE (2014)
Metal limitation and toxicity at the interface between host and pathogen
Kyle W. Becker et al.
FEMS MICROBIOLOGY REVIEWS (2014)
Physical Characterization of the Manganese-Sensing Pneumococcal Surface Antigen Repressor from Streptococcus pneumoniae
John P. Lisher et al.
BIOCHEMISTRY (2013)
Allosteric Inhibition of a Zinc-Sensing Transcriptional Repressor: Insights into the Arsenic Repressor (ArsR) Family
Gregory C. Campanello et al.
JOURNAL OF MOLECULAR BIOLOGY (2013)
Antimicrobial activity of metals: mechanisms, molecular targets and applications
Joseph A. Lemire et al.
NATURE REVIEWS MICROBIOLOGY (2013)
Metal site occupancy and allosteric switching in bacterial metal sensor proteins
Alfredo J. Guerra et al.
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS (2012)
Nonspecific Interactions Between Escherichia coli NikR and DNA Are Critical for Nickel-Activated DNA Binding
Sandra Krecisz et al.
BIOCHEMISTRY (2012)
Recent advances in Helicobacter pylori pathogenesis
Michal Sibony et al.
CURRENT OPINION IN GASTROENTEROLOGY (2012)
Nutritional immunity: transition metals at the pathogen-host interface
M. Indriati Hood et al.
NATURE REVIEWS MICROBIOLOGY (2012)
Ni(II) coordination to mixed sites modulates DNA binding of HpNikR via a long- range effect
Abby L. West et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Metalloregulatory proteins: Metal selectivity and allosteric switching
Hermes Reyes-Caballero et al.
BIOPHYSICAL CHEMISTRY (2011)
Holo-Ni2+ Helicobacter pylori NikR contains four square-planar nickel-binding sites at physiological pH
Stefano Benini et al.
DALTON TRANSACTIONS (2011)
Helicobacter pylori NikR Protein Exhibits Distinct Conformations When Bound to Different Promoters
Erin L. Benanti et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2011)
Mechanisms of nickel toxicity in microorganisms
Lee Macomber et al.
METALLOMICS (2011)
Hierarchical regulation of the NikR-mediated nickel response in Helicobacter pylori
Cecile Muller et al.
NUCLEIC ACIDS RESEARCH (2011)
Dynamic Allostery: Linkers Are Not Merely Flexible
Buyong Ma et al.
STRUCTURE (2011)
Structural Basis of Low-Affinity Nickel Binding to the Nickel-Responsive Transcription Factor NikR from Escherichia coli
Christine M. Phillips et al.
BIOCHEMISTRY (2010)
Characterization of NikR-responsive promoters of urease and metal transport genes of Helicobacter mustelae
Jeroen Stoof et al.
BIOMETALS (2010)
Computational Study of the DNA-Binding Protein Helicobacter pylori NikR: The Role of Ni2+
Francesco Musiani et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2010)
Holo-Ni(II)HpNikR Is an Asymmetric Tetramer Containing Two Different Nickel-Binding Sites
Abby L. West et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2010)
Coordinating intracellular nickel-metal-site structure-function relationships and the NikR and RcnR repressors
Jeffrey S. Iwig et al.
NATURAL PRODUCT REPORTS (2010)
Structural and mechanistic insights into Helicobacter pylori NikR activation
C. Bahlawane et al.
NUCLEIC ACIDS RESEARCH (2010)
Regulatory circuits in Helicobacter pylori : network motifs and regulators involved in metal-dependent responses
Alberto Danielli et al.
FEMS MICROBIOLOGY REVIEWS (2010)
pH-Responsive DNA-Binding Activity of Helicobacter pylori NikR
Yanjie Li et al.
BIOCHEMISTRY (2009)
Helicobacter pylori NikR's Interaction with DNA: A Two-Tiered Mode of Recognition
Nuvjeevan S. Dosanjh et al.
BIOCHEMISTRY (2009)
Coordination Chemistry of Bacterial Metal Transport and Sensing
Zhen Ma et al.
CHEMICAL REVIEWS (2009)
Hydrozen and nickel metabolism in Helicobacter species
Stephane L. Benoit et al.
INCREDIBLE ANAEROBES: FROM PHYSIOLOGY TO GENOMICS TO FUELS (2008)
Structural basis of the metal specificity for nickel regulatory protein NikR
Christine M. Phillips et al.
BIOCHEMISTRY (2008)
Metal ions in biological catalysis: from enzyme databases to general principles
Claudia Andreini et al.
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY (2008)
High-Affinity Ni2+ Binding Selectively Promotes Binding of Helicobacter pylori NikR to Its Target Urease Promoter
Barbara Zambelli et al.
JOURNAL OF MOLECULAR BIOLOGY (2008)
The N-terminal arm of the Helicobacter pylori Ni2+-dependent transcription factor NikR is required for specific DNA binding
Erin L. Benanti et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2007)
Ten years after the first Helicobacter pylori genome:: comparative and functional genomics provide new insights in the variability and adaptability of a persistent pathogen
Hilde de Reuse et al.
FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY (2007)
Characterization of the Helicobacter pylori NikR-PureA DNA interaction:: Metal ion requirements and sequence specificity
Nuvjeevan S. Dosanjh et al.
BIOCHEMISTRY (2007)
Metal sensor proteins: nature's metalloregulated allosteric switches
David P. Giedroc et al.
DALTON TRANSACTIONS (2007)
The Ni2+ binding properties of Helicobacter pylori NikR
Barbara Zambelli et al.
CHEMICAL COMMUNICATIONS (2007)
pH dependent Ni(II) binding and aggregation of Escherichia coli and Helicobacter pylori NikR
C. Fauquant et al.
BIOCHIMIE (2006)
NikR-operator complex structure and the mechanism of repressor activation by metal ions
Eric R. Schreiter et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Structural basis of the nickel response in Helicobacter pylori:: Crystal structures of HpNikR in Apo and nickel-bound states
Cyril Dian et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
The metal- and DNA-binding activities of Helicobacter pylori NikR
Lihor O. Abraham et al.
JOURNAL OF INORGANIC BIOCHEMISTRY (2006)
Counting out to the flexibility of molecules
W Whiteley
PHYSICAL BIOLOGY (2005)
In vitro analysis of protein-operator interactions of the NikR and fur metal-responsive regulators of coregulated genes in Helicobacter pylori
I Delany et al.
JOURNAL OF BACTERIOLOGY (2005)
Protease digestion analysis of Escherichia coli NikR:: evidence for conformational stabilization with Ni(II)
AV Dias et al.
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY (2005)
Structure of Pyrococcus horikoshii NikR:: Nickel sensing and implications for the regulation of DNA recognition
PT Chivers et al.
JOURNAL OF MOLECULAR BIOLOGY (2005)
Selectivity of metal binding and metal-induced stability of Escherichia coli NikR
SC Wang et al.
BIOCHEMISTRY (2004)
Crystal structure of the nickel-responsive transcription factor NikR
ER Schreiter et al.
NATURE STRUCTURAL BIOLOGY (2003)
Characterization of the roles of NikR, a nickel-responsive pleiotropic autoregulator of Helicobacter pylori
M Contreras et al.
MOLECULAR MICROBIOLOGY (2003)
Molecular hydrogen as an energy source for Helicobacter pylori
JW Olson et al.
SCIENCE (2002)
NikR mediates nickel-responsive transcriptional induction of urease expression in Helicobacter pylori
AHM van Vliet et al.
INFECTION AND IMMUNITY (2002)
Energetics of Helicobacter pylori and its implications for the mechanism of urease-dependent acid tolerance at pH 1
K Stingl et al.
JOURNAL OF BACTERIOLOGY (2002)
Protein flexibility predictions using graph theory
DJ Jacobs et al.
PROTEINS-STRUCTURE FUNCTION AND GENETICS (2001)
Regulation of transcription in Helicobacter pylori:: simple systems or complex circuits?
V Scarlato et al.
INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY (2001)
Regulation of high affinity nickel uptake in bacteria -: Ni2+-dependent interaction of NikR with wild-type and mutant operator sites
PT Chivers et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2000)
Spectroscopic characterization of Co(II)-, Ni(II)-, and Cd(II)-substituted wild-type and non-native retroviral-type zinc finger peptides
XH Chen et al.
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY (2000)
Role of linkers in communication between protein modules
RS Gokhale et al.
CURRENT OPINION IN CHEMICAL BIOLOGY (2000)