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注意:仅列出部分参考文献,下载原文获取全部文献信息。NmRF: identification of multispecies RNA 2′-O-methylation modification sites from RNA sequences
Chunyan Ao et al.
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Zhibin Lv et al.
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A transformer architecture based on BERT and 2D convolutional neural network to identify DNA enhancers from sequence information
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Ximei Luo et al.
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STREME: accurate and versatile sequence motif discovery
Timothy L. Bailey
BIOINFORMATICS (2021)
DeepOMe: A Web Server for the Prediction of 2′-O-Me Sites Based on the Hybrid CNN and BLSTM Architecture
Hongyu Li et al.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY (2021)
EDLm6APred: ensemble deep learning approach for mRNA m6A site prediction
Lin Zhang et al.
BMC BIOINFORMATICS (2021)
Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely occurring RNA modifications
Zitao Song et al.
NATURE COMMUNICATIONS (2021)
Metric Labeling and Semimetric Embedding for Protein Annotation Prediction
Emre Sefer et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2021)
DeepETC: A deep convolutional neural network architecture for investigating and classifying electron transport chain's complexes
Nguyen Quoc Khanh Le et al.
NEUROCOMPUTING (2020)
VARIDT 1.0: variability of drug transporter database
Jiayi Yin et al.
NUCLEIC ACIDS RESEARCH (2020)
Therapeutic target database 2020: enriched resource for facilitating research and early development of targeted therapeutics
Yunxia Wang et al.
NUCLEIC ACIDS RESEARCH (2020)
iMRM: a platform for simultaneously identifying multiple kinds of RNA modifications
Kewei Liu et al.
BIOINFORMATICS (2020)
Identification of methylation states of DNA regions for Illumina methylation BeadChip
Ximei Luo et al.
BMC GENOMICS (2020)
DeepAVP: A Dual-Channel Deep Neural Network for Identifying Variable-Length Antiviral Peptides
Jiawei Li et al.
IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS (2020)
Bioinformatics approaches for deciphering the epitranscriptome: Recent progress and emerging topics
Lian Liu et al.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2020)
iRNA-PseKNC(2methyl): Identify RNA 2′-O-methylation sites by convolution neural network and Chou's pseudo components
Muhammad Tahir et al.
JOURNAL OF THEORETICAL BIOLOGY (2019)
Enhancer-5Step: Identifying enhancers using hidden information of DNA sequences via Chou's 5-step rule and word embedding
Nguyen Quoc Khanh Le et al.
ANALYTICAL BIOCHEMISTRY (2019)
An improved deep learning method for predicting DNA-binding proteins based on contextual features in amino acid sequences
Siquan Hu et al.
PLOS ONE (2019)
NmSEER V2.0: a prediction tool for 2′-O-methylation sites based on random forest and multi-encoding combination
Yiran Zhou et al.
BMC BIOINFORMATICS (2019)
Modeling aspects of the language of life through transfer-learning protein sequences
Michael Heinzinger et al.
BMC BIOINFORMATICS (2019)
RMBase v2.0: deciphering the map of RNA modifications from epitranscriptome sequencing data
Jia-Jia Xuan et al.
NUCLEIC ACIDS RESEARCH (2018)
Prediction of potential disease-associated microRNAs using structural perturbation method
Xiangxiang Zeng et al.
BIOINFORMATICS (2018)
Imbalance learning for the prediction of N6-Methylation sites in mRNAs
Zhixun Zhao et al.
BMC GENOMICS (2018)
iRNA-2OM: A Sequence-Based Predictor for Identifying 2′-O-Methylation Sites in Homo sapiens
Hui Yang et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2018)
High-throughput single-base resolution mapping of RNA 2′-O-methylated residues
Danny Incarnato et al.
NUCLEIC ACIDS RESEARCH (2017)
Methods of MicroRNA Promoter Prediction and Transcription Factor Mediated Regulatory Network
Yuming Zhao et al.
BIOMED RESEARCH INTERNATIONAL (2017)
Integrative approaches for predicting microRNA function and prioritizing disease-related microRNA using biological interaction networks
Xiangxiang Zeng et al.
BRIEFINGS IN BIOINFORMATICS (2016)
Identifying 2′-O-methylationation sites by integrating nucleotide chemical properties and nucleotide compositions
Wei Chen et al.
GENOMICS (2016)
Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent Mixing Structures in Cell Subpopulations
Emre Sefer et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2016)
Transcriptome-wide mapping reveals reversible and dynamic N1-methyladenosine methylome
Xiaoyu Li et al.
NATURE CHEMICAL BIOLOGY (2016)
MicroRNA Promoter Identification in Arabidopsis Using Multiple Histone Markers
Yuming Zhao et al.
BIOMED RESEARCH INTERNATIONAL (2015)
Continuous Distributed Representation of Biological Sequences for Deep Proteomics and Genomics
Ehsaneddin Asgari et al.
PLOS ONE (2015)
The CART decision tree for mining data streams
Leszek Rutkowski et al.
INFORMATION SCIENCES (2014)
RTL-P: a sensitive approach for detecting sites of 2′-O-methylation in RNA molecules
Zhi-Wei Dong et al.
NUCLEIC ACIDS RESEARCH (2012)
Ribose 2′-O-methylation provides a molecular signature for the distinction of self and non-self mRNA dependent on the RNA sensor Mda5
Roland Zuest et al.
NATURE IMMUNOLOGY (2011)
The expanding snoRNA world
JP Bachellerie et al.
BIOCHIMIE (2002)
Small nucleolar RNAs: An abundant group of noncoding RNAs with diverse cellular functions
T Kiss
CELL (2002)