The impact of deleting the mitfa gene in zebrafish on the intestinal microbiota community

Article Immunology

Effects of dietary antimicrobial peptides on intestinal morphology, antioxidant status, immune responses, microbiota and pathogen disease resistance in grass carp Ctenopharyngodon idellus

Shulin Liu et al.

Summary: This study finds that dietary antimicrobial peptides have positive effects on intestinal morphology, digestive and antioxidant capacities, immunity, and intestinal microbiota in grass carp.

MICROBIAL PATHOGENESIS (2022)

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Article Immunology

Alteration of gut microbiota composition and function of Indian major carp, rohu (Labeo rohita) infected with Argulus siamensis

Hemanta Kumar Mondal et al.

Summary: The study found that Argulus infection significantly affects the diversity and richness of intestinal microbiota in rohu fish, with an enrichment of Actinobacteria and Patescibacteria. Infected fish showed a higher number of unique genera compared to healthy fish, with significant increases in certain genera like Stenotrophomonas and Pirellula, and a decrease in Reyranella. The composition and function of the gut microbiota were positively associated, and the predicted function in infected fish suggested an enrichment in the synthesis of chitinases, chitin binding proteins, osmoprotectant proteins, and sulfatases enzymes.

MICROBIAL PATHOGENESIS (2022)

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Article Environmental Sciences

Effects of acute deltamethrin exposure on kidney transcriptome and intestinal microbiota in goldfish (Carassius auratus)

Shun Zhou et al.

Summary: Exposure to deltamethrin induced apoptosis and immunotoxicity in goldfish kidneys and altered the composition of the intestinal microbiota in goldfish. The study provides a comprehensive analysis of the adverse effects of deltamethrin exposure on goldfish and sheds light on the toxicological mechanisms of deltamethrin in fish.

ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY (2021)

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Article Environmental Sciences

Toxicological effects of microplastics and phenanthrene to zebrafish (Danio rerio)

Kaihang Xu et al.

Summary: The study found that microplastics enhance the toxicity of phenanthrene and have a synergistic effect. Accumulation of both microplastics and phenanthrene increased with prolonged exposure time, and the combined exposure group showed more severe effects.

SCIENCE OF THE TOTAL ENVIRONMENT (2021)

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Article Microbiology

Citrobacter tructae sp. nov. Isolated from Kidney of Diseased Rainbow Trout (Oncorhynchus mykiss)

Won Joon Jung et al.

Summary: A novel Citrobacter species, identified as C. tructae, was isolated from the kidney of diseased rainbow trout, showing distinct phylogenetic and phenotypic characteristics compared to other Citrobacter species. The strain features Q-10 isoprenoid quinone, antibiotic resistance, and a plasmid.

MICROORGANISMS (2021)

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Article Immunology

Reprocessing 16S rRNA Gene Amplicon Sequencing Studies: (Meta)Data Issues, Robustness, and Reproducibility

Xiongbin Kang et al.

Summary: High-throughput sequencing technology is efficient for assessing microbial ecology, with bioinformatics pipelines converting data to OTU tables for analysis. The robustness of these pipelines, processing steps, and their impact on statistical tests need to be evaluated. Different pipelines in this study produced similar results, but discrepancies in P-values were observed, indicating the need for improved bioinformatics method descriptions and data deposition for reproducibility.

FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2021)

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Article Environmental Sciences

Combined effects of polyethylene and organic contaminant on zebrafish (Danio rerio): Accumulation of 9-Nitroanthracene, biomarkers and intestinal microbiota

Jinghua Zhang et al.

Summary: Microplastics are predicted to act as carriers for organic pollutants, but their carrier role and bio-toxic effects with other pollutants in environments are poorly acknowledged. This study investigated the effects of polyethylene (PE) and 9-Nitroanthracene (9-NAnt) on zebrafish, showing that PE could carry 9-NAnt into fish causing bioaccumulation, but in the case of coexisting exposures, PE reduced 9-NAnt bioaccumulation. The study suggests that microplastics with other emerging pollutants in chronic toxicity are probably next objects in future works.

ENVIRONMENTAL POLLUTION (2021)

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Article Immunology

The complement system drives local inflammatory tissue priming by metabolic reprogramming of synovial fibroblasts

Jasna Friscic et al.

Summary: Inflammation-mediated tissue priming causes recurrence and worsening of arthritis, involving molecular and cellular mechanisms. This priming occurs locally and independently of adaptive immunity, and can be enhanced by activating complement C3 and C3a receptor, along with other molecular pathways, to boost cellular metabolic activity and increase inflammation sensitivity.

IMMUNITY (2021)

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Article Immunology

TLR2 senses the SARS-CoV-2 envelope protein to produce inflammatory cytokines

Min Zheng et al.

Summary: The study revealed that the envelope protein of SARS-CoV-2 is sensed by TLR2, leading to the production of inflammatory cytokines, and the severity of the disease is associated with the expression of TLR2 and MYD88. The findings demonstrate the critical role of TLR2 signaling in promoting proinflammatory cytokine production during coronavirus infection, providing new insights for therapeutic strategies against the ongoing COVID-19 pandemic.

NATURE IMMUNOLOGY (2021)

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Article Fisheries

Expression profile of the fish immune enzyme L-amino acid oxidase (LAAO) after Streptococcus agalactiae infection in zebrafish (Danio rerio)

Yuxi Huang et al.

Summary: The study focused on the cloning and expression of LAAO gene in zebrafish, revealing significant changes in early-stage infection with Streptococcus agalactiae and a more pronounced expression compared to lysozyme.

DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY (2021)

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Article Environmental Sciences

Sub-chronic exposure to antibiotics doxycycline, oxytetracycline or florfenicol impacts gut barrier and induces gut microbiota dysbiosis in adult zebrafish (Daino rerio)

Mingrong Qian et al.

Summary: The wide usage of antibiotics in livestock production leads to residues in animal products and in watercourses. Exposure to antibiotics can cause hepatic metabolic disorder and gut microbiota dysbiosis in adult male zebrafish.

ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY (2021)

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Article Genetics & Heredity

Evolution and Functional Characteristics of the Novel elovl8 That Play Pivotal Roles in Fatty Acid Biosynthesis

Shouxiang Sun et al.

Summary: The study revealed that Elovl8 is not unique to teleosts, but has a wide phylogenetic distribution. Through the use of CRISPR/Cas9 technology, it was demonstrated that Elovl8a and Elovl8b play important roles in fatty acid elongation. Further experiments showed the substrate preferences and capabilities of these enzymes in fatty acid biosynthesis.

GENES (2021)

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Article Gastroenterology & Hepatology

Intestinal Cetobacterium and acetate modify glucose homeostasis via parasympathetic activation in zebrafish

Anran Wang et al.

Summary: Fish have limited capability to utilize carbohydrates compared to mammals. In this study, zebrafish fed with omnivorous and herbivorous diets showed better glucose homeostasis due to enrichment of the commensal bacterium Cetobacterium somerae, which produces acetate. Dietary supplementation of acetate promotes glucose utilization in zebrafish, and the beneficial effect of acetate and C. somerae on glucose homeostasis is mediated through parasympathetic activation. These findings suggest potential strategies for improving fish carbohydrate utilization.

GUT MICROBES (2021)

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Article Fisheries

TAF5L functions as transcriptional coactivator of MITF involved in the immune response of the clam Meretrix petechialis

Di Wang et al.

FISH & SHELLFISH IMMUNOLOGY (2020)

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Review Immunology

Biology and therapeutic potential of interleukin-10

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JOURNAL OF EXPERIMENTAL MEDICINE (2020)

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Article Oncology

Gut Microbiota and Host Gene Mutations in Colorectal Cancer Patients and Controls of Iranian and Finnish Origin

Virinder Sarhadi et al.

ANTICANCER RESEARCH (2020)

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Article Biochemistry & Molecular Biology

Isoniazid promotes the anti-inflammatory response in zebrafish associated with regulation of the PPARγ/NF-κB/AP-1 pathway

Yun Zhang et al.

CHEMICO-BIOLOGICAL INTERACTIONS (2020)

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Article Environmental Sciences

Differential mechanisms regarding triclosan vs. bisphenol A and fluorene-9-bisphenol induced zebrafish lipid-metabolism disorders by RNA-Seq

Limei Sun et al.

CHEMOSPHERE (2020)

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Article Microbiology

Citrobacter Species Increase Energy Harvest by Modulating Intestinal Microbiota in Fish: Nondominant Species Play Important Functions

Mei-Ling Zhang et al.

MSYSTEMS (2020)

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Article Fisheries

Benzo[a]pyrene induces microbiome dysbiosis and inflammation in the intestinal tracts of western mosquitofish (Gambusia affinis) and zebrafish (Danio rerio)

Shaolin Xie et al.

FISH & SHELLFISH IMMUNOLOGY (2020)

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Article Gastroenterology & Hepatology

Intestinal dysbiosis in pediatric Crohn's disease patients with IL10RA mutations

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WORLD JOURNAL OF GASTROENTEROLOGY (2020)

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Article Oncology

Enhanced Fatty Acid Scavenging and Glycerophospholipid Metabolism Accompany Melanocyte Neoplasia Progression in Zebrafish

Fiona Henderson et al.

CANCER RESEARCH (2019)

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Article Environmental Sciences

Microbiota comparison of Pacific white shrimp intestine and sediment at freshwater and marine cultured environment

Lanfen Fan et al.

SCIENCE OF THE TOTAL ENVIRONMENT (2019)

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Article Microbiology

Chromulinavorax destructans, a pathogen of microzooplankton that provides a window into the enigmatic candidate phylum Dependentiae

Christoph M. Deeg et al.

PLOS PATHOGENS (2019)

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Review Genetics & Heredity

Ketogenic Diet and Microbiota: Friends or Enemies?

Antonio Paoli et al.

GENES (2019)

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Article Environmental Sciences

DVC-FISH to identify potentially pathogenic Legionella inside free-living amoebae from water sources

Y. Moreno et al.

ENVIRONMENTAL RESEARCH (2019)

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Article Microbiology

Genomic characterization of Nocardia seriolae strains isolated from diseased fish

Hyun-Ja Han et al.

MICROBIOLOGYOPEN (2019)

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Article Environmental Sciences

Microplastics induce intestinal inflammation, oxidative stress, and disorders of metabolome and microbiome in zebrafish

Ruxia Qiao et al.

SCIENCE OF THE TOTAL ENVIRONMENT (2019)

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Article Microbiology

The Response of Microbiota Community to Streptococcus agalactiae Infection in Zebrafish Intestine

Qi-Lin Zhang et al.

FRONTIERS IN MICROBIOLOGY (2019)

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Article Biochemistry & Molecular Biology

CRISPR/Cas9-based genome engineering of zebrafish using a seamless integration strategy

Juan-Juan Luo et al.

FASEB JOURNAL (2018)

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Article Immunology

Citrobacter freundii infection in silver catfish (Rhamdia quelen): Hematological and histological alterations

Guerino Bandeira Junior et al.

MICROBIAL PATHOGENESIS (2018)

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Article Multidisciplinary Sciences

Temporal development of the gut microbiome in early childhood from the TEDDY study

Christopher J. Stewart et al.

NATURE (2018)

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Article Fisheries

Pathogen invasion changes the intestinal microbiota composition and induces innate immune responses in the zebrafish intestine

Hui-Ting Yang et al.

FISH & SHELLFISH IMMUNOLOGY (2017)

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Article Fisheries

Identification of an MITF gene and its polymorphisms associated with the Vibrio resistance trait in the clam Meretrix petechialis

Shujing Zhang et al.

FISH & SHELLFISH IMMUNOLOGY (2017)

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Article Biotechnology & Applied Microbiology

Gordonia: isolation and identification in clinical samples and role in biotechnology

Fatemeh Andalibi et al.

FOLIA MICROBIOLOGICA (2017)

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Review Endocrinology & Metabolism

SREBP-regulated lipid metabolism: convergent physiology - divergent pathophysiology

Hitoshi Shimano et al.

NATURE REVIEWS ENDOCRINOLOGY (2017)

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MITF - A controls branching morphogenesis and nephron endowment

Aurelie Phelep et al.

PLOS GENETICS (2017)

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Article Infectious Diseases

Molecular characterization and antimicrobial resistance profile of atypical Citrobacter gillenii and Citrobacter sp isolated from diseased rainbow trout (Oncorhynchus mykiss)

Muhammed Duman et al.

JOURNAL OF GLOBAL ANTIMICROBIAL RESISTANCE (2017)

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Article Multidisciplinary Sciences

Effects of Sodium Butyrate Treatment on Histone Modifications and the Expression of Genes Related to Epigenetic Regulatory Mechanisms and Immune Response in European Sea Bass (Dicentrarchus Labrax) Fed a Plant-Based Diet

Genciana Terova et al.

PLOS ONE (2016)

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Article Environmental Sciences

Metagenomic profiles and antibiotic resistance genes in gut microbiota of mice exposed to arsenic and iron

Xuechao Guo et al.

CHEMOSPHERE (2014)

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Review Immunology

Commensal bacteria at the interface of host metabolism and the immune system

Jonathan R. Brestoff et al.

NATURE IMMUNOLOGY (2013)

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Article Multidisciplinary Sciences

Evidence of the Presence of a Functional Dot/Icm Type IV-B Secretion System in the Fish Bacterial Pathogen Piscirickettsia salmonis

Fernando A. Gomez et al.

PLOS ONE (2013)

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Article Developmental Biology

mitfa is required at multiple stages of melanocyte differentiation but not to establish the melanocyte stem cell

Stephen L. Johnson et al.

DEVELOPMENTAL BIOLOGY (2011)

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Article Immunology

The Gene History of Zebrafish tlr4a and tlr4b Is Predictive of Their Divergent Functions

Con Sullivan et al.

JOURNAL OF IMMUNOLOGY (2009)

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Article Cell & Tissue Engineering

Transparent adult zebrafish as a tool for in vivo transplantation analysis

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CELL STEM CELL (2008)

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Article Developmental Biology

colgate/hdac1 repression of foxd3 expression is required to permit mitfa-dependent melanogenesis

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DEVELOPMENTAL BIOLOGY (2008)

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Article Multidisciplinary Sciences

An obesity-associated gut microbiome with increased capacity for energy harvest

Peter J. Turnbaugh et al.

NATURE (2006)

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The impact of deleting the mitfa gene in zebrafish on the intestinal microbiota community

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