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Phenotypic evolution of agricultural crops

FUNCTIONAL ECOLOGY (2023)

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Review Environmental Sciences

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Summary: Healthy soils play a crucial role in planetary survivability, providing not only calories but also other essential functions. However, intensive agriculture is rapidly degrading soils and diminishing their capacity to deliver vital functions, highlighting the need to focus on the multiple functions of soils for long-term human welfare and the survivability of the planet.

CRITICAL REVIEWS IN ENVIRONMENTAL SCIENCE AND TECHNOLOGY (2022)

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Article Ecology

Using plant traits to understand the contribution of biodiversity effects to annual crop community productivity

Nadine Engbersen et al.

Summary: Increasing crop diversity enhances seed yield through a combination of selection and complementarity effects, with plant height and specific leaf area playing important roles. The increase in seed yield from monocultures to mixtures is driven by different ecological processes, highlighting the complex interactions in diverse cropping systems.

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Article Plant Sciences

Disparities among crop species in the evolution of growth rates: the role of distinct origins and domestication histories

Alicia Gomez-Fernandez et al.

Summary: The study reveals that growth rates of different crops may increase, decrease, or remain unchanged during domestication and improvement, with fruit crops primarily influenced by physiological factors and leaf/seed crops affected by morphological changes. Climate and phylogeny also play a role in explaining domestication effects and growth changes in crops.

NEW PHYTOLOGIST (2022)

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Article Multidisciplinary Sciences

Climate and agronomy, not genetics, underpin recent maize yield gains in favorable environments

Gonzalo Rizzo et al.

Summary: This study analyzed data from the largest irrigated maize production area in Nebraska, United States, and found that climate change, agronomic improvements, and genetic potential improvement contributed 48%, 39%, and 13% respectively to yield increases in major food crops. These findings highlight the need to reevaluate the contributions to yield advances and prioritize future research and development.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2022)

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Review Ecology

Addressing context dependence in ecology

Jane A. Catford et al.

Summary: Context dependence is a key factor in explaining diverse outcomes in ecology, and it arises when the conditions under which a relationship is observed change. It can lead to contradictory conclusions and limit the transferability of research findings. Through examples from biological invasions, two types of context dependence, mechanistic and apparent, are identified.

TRENDS IN ECOLOGY & EVOLUTION (2022)

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Review Plant Sciences

Plant secondary metabolites altering root microbiome composition and function

Anna Koprivova et al.

Summary: Plants communicate with microorganisms through metabolites exuded from roots, which play a crucial role in modulating the functions of plant associated microbiota. Recent research has identified various metabolites involved in this communication network, but there are still significant knowledge gaps to be filled in future studies.

CURRENT OPINION IN PLANT BIOLOGY (2022)

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Article Plant Sciences

Comparisons of photosynthetic and anatomical traits between wild and domesticated cotton

Zhangying Lei et al.

Summary: The study analyzed the influence of cotton domestication on leaf anatomy and mesophyll conductance. It found that domesticated cotton genotypes had higher photosynthetic rates but similar mesophyll conductance to wild genotypes, due to compensating changes in cell wall and cytoplasmic conductances.

JOURNAL OF EXPERIMENTAL BOTANY (2022)

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Article Plant Sciences

Variation of photosynthesis during plant evolution and domestication: implications for improving crop photosynthesis

Guanjun Huang et al.

Summary: The variation of photosynthesis along plant phylogeny and during domestication has been investigated, and it was found that photosynthesis was dramatically improved from ferns to non-crop angiosperms, and further increased in crops. The improvement of photosynthesis was related to increases in carbon dioxide diffusional capacities and, to a lesser extent, biochemical capacity. Cell wall thickness drove the variation of mesophyll conductance. Leaf nitrogen content was found to be less efficient in improving photosynthesis in crops than in non-crop angiosperms.

JOURNAL OF EXPERIMENTAL BOTANY (2022)

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Article Plant Sciences

Stomata on the abaxial and adaxial leaf surfaces contribute differently to leaf gas exchange and photosynthesis in wheat

Shellie Wall et al.

Summary: Wheat flag leaves have higher stomatal density on the adaxial surface compared to the abaxial surface. Mesophyll cells on the adaxial surface have higher photosynthetic capacity and stomatal conductance. There is some coordination between the two leaf surfaces, but factors other than light intensity also play a role in stomatal kinetics.

NEW PHYTOLOGIST (2022)

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Article Plant Sciences

A trait-environment relationship approach to participatory plant breeding for organic agriculture

Andres G. Rolhauser et al.

Summary: This study proposes a three-dimensional framework involving crop performance, crop traits, and environmental axes to uncover the multidimensionality of trait-environment relationships within a crop. The results show that different crop varieties have different trait-environment relationships for maximizing water-use efficiency (WUE), depending on the combinations of trait values and soil conditions. This research provides guidance for breeding programs to optimize crop attributes from an eco-evolutionary perspective.

NEW PHYTOLOGIST (2022)

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Review Ecology

Emerging evidence of plant domestication as a landscape-level process

Robin G. Allaby et al.

Summary: Evidence from ancient crops challenges our assumptions about the domestication process. Instead of being a technologically progressive process, it is now revealed as a slow and complex process that involves large populations over wide areas and sustained cultural connections. This calls for a new understanding of crop origins and questions the concept of domestication bottleneck and its progressive nature.

TRENDS IN ECOLOGY & EVOLUTION (2022)

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Review Ecology

What is domestication?

Michael D. Purugganan

Summary: The nature of domestication is a coevolutionary process that arises from a specialized mutualism, in which one species controls the fitness of another to gain resources and/or services. The current definitions of domestication are anthropocentric and overlook the role of unconscious selection, calling for a more inclusive definition that encompasses non-human domesticators and other forms of domestication.

TRENDS IN ECOLOGY & EVOLUTION (2022)

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Article Multidisciplinary Sciences

Rapid weed adaptation and range expansion in response to agriculture over the past two centuries

Julia M. Kreiner et al.

Summary: This study uses genome analysis of the common waterhemp to demonstrate the significant impact of modern agriculture and agricultural intensification on the evolution of agricultural weeds. The strong selection pressure and changes in allele frequency trajectories since the 1960s have influenced the success of this weed in the 21st century, with human-mediated range shifts playing a role.

SCIENCE (2022)

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Rewilding plant microbiomes Microbiota of crop ancestors may offer a way to enhance sustainable food production

Jos M. Raaijmakers et al.

SCIENCE (2022)

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Article Ecology

Do plant communities show constant final yield?

Andrea Cavalieri et al.

Summary: The study found that the total biomass production of plant monocultures tends to stabilize as density increases, known as constant final yield (CFY). Through a series of experiments, it was confirmed that CFY exists in communities of annual species, where individual species' contributions to biomass production remain relatively insensitive to increases in density above CFY.

ECOLOGY (2022)

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Article Biochemistry & Molecular Biology

Increasing plant group productivity through latent genetic variation for cooperation

Samuel E. Wuest et al.

Summary: Traditional breeding approaches may select for selfish traits that reduce yield in high-density monocultures. This study developed a general method for the discovery of alleles promoting cooperation in plant stands, based on game theory. Testing the method using Arabidopsis thaliana, a major effect locus was found where the rarer allele was associated with increased cooperation and productivity in high-density stands.

PLOS BIOLOGY (2022)

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Article Environmental Sciences

Global-Scale Shifts in Rooting Depths Due To Anthropocene Land Cover Changes Pose Unexamined Consequences for Critical Zone Functioning

Emma Hauser et al.

Summary: Rooting depth is an ecosystem trait that is influenced by changes in land cover due to agricultural expansion and climate change. These changes in rooting depth have implications for water, carbon, and nutrient cycling in the hydrosphere-atmosphere-lithosphere feedback system.

EARTHS FUTURE (2022)

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Article Biochemistry & Molecular Biology

Turning promise into practice: Crop biotechnology for increasing genetic diversity and climate resilience

Sarah Garland et al.

Summary: As climate change threatens agricultural production, increasing genetic diversity in crops is crucial for climate resilience. This Essay explores the potential of crop biotechnology to contribute to diversification, emphasizing the importance of engaging researchers and stakeholders beyond the laboratory.

PLOS BIOLOGY (2022)

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Article Agriculture, Multidisciplinary

Honeybees are far too insufficient to supply optimum pollination services in agricultural systems worldwide

Shibonage K. Mashilingi et al.

Summary: Evidence shows that wild pollinators are declining in both global and local habitats, while the number of managed pollinators has increased globally. However, it is unclear whether managed pollinators can meet the agricultural pollination demand in the face of declining wild pollinators. This study reveals a rapid increase in the demand for honeybee pollination but a decreasing capacity of honeybee colonies to provide pollination services. The results emphasize the importance of protecting pollinators and integrating the management of honeybees and wild pollinator assemblages for a sustainable food-secure future world.

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Rapid transgenerational adaptation in response to intercropping reduces competition

Laura Stefan et al.

Summary: By capitalising on positive biodiversity-productivity relationships, intercropping provides opportunities to improve agricultural sustainability. This study shows that parental diversity may affect plant-plant interactions, species complementarity, and ecosystem functioning in annual crop systems.

ELIFE (2022)

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The origins of agriculture: Intentions and consequences

Glynis Jones et al.

Summary: The synthesis of a large programme of plant ecological research suggests that ecological processes and unintended consequences of human actions may have played a significant role in the emergence of agriculture in western Asia, potentially more so than previously thought. The coevolutionary mechanisms between humans and plants could have been a key factor in the transition from hunter-gatherer societies to agricultural way of life.

JOURNAL OF ARCHAEOLOGICAL SCIENCE (2021)

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Cultivate biodiversity to harvest food security and sustainability

Delphine Renard et al.

Summary: Increasing national crop diversity and implementing practices based on greater crop biodiversity can help improve the stability and security of national food systems. Recent research suggests that unlocking the agricultural potential of biodiversity may lead to higher and more stable yields, decrease land clearing, and reduce the use of harmful agrochemicals.

CURRENT BIOLOGY (2021)

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Review Plant Sciences

Enabling sustainable agriculture through understanding and enhancement of microbiomes

Pankaj Trivedi et al.

Summary: Harnessing plant-associated microbiomes is a crucial strategy for sustainable agricultural production, but challenges remain in commercialization of microbial-based products. Translating microbiome knowledge into real-world applications will require interdisciplinary research and training the next generation of scientists.

NEW PHYTOLOGIST (2021)

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Article Multidisciplinary Sciences

Functional rarity and evenness are key facets of biodiversity to boost multifunctionality

Yoann Le Bagousse-Pinguet et al.

Summary: The study shows that three dimensions of functional diversity can explain up to 66% of variations in multifunctionality, with increasing evenness among functionally dissimilar species key to promoting higher multifunctionality. Managing dispersion, evenness, and rarity in multispecies assemblages could be used to maximize multifunctionality independently of biome or identity of dominant species.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)

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Article Agronomy

Differences in Weed Suppression between Two Modern and Two Old Wheat Cultivars at Different Sowing Densities

Yue Wu et al.

Summary: In modern agricultural systems, modern crop cultivars with low individual competitiveness can be more vulnerable to weed interference, but by increasing crop planting density, weed growth can be effectively suppressed. Research shows that old cultivars are better at weed suppression than modern cultivars at low density, while modern cultivars can perform equally well at high density.

AGRONOMY-BASEL (2021)

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Article Plant Sciences

Intentional and unintentional selection during plant domestication: herbivore damage, plant defensive traits and nutritional quality of fruit and seed crops

Anahi R. Fernandez et al.

Summary: The study found that crops are more susceptible to herbivore attacks compared to their wild relatives, mainly due to lower levels of herbivore defensive traits, especially indirect defenses. Additionally, the nutritional quality of crops was lower than that of wild relatives, potentially leading to increased biomass loss to herbivores as they increase consumption to meet their nutritional requirements. This research provides important insights into how changes in defensive and nutritional traits following domestication could impact crop susceptibility to herbivore attacks.

NEW PHYTOLOGIST (2021)

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Editorial Material Plant Sciences

All Traits Are Functional: An Evolutionary Viewpoint

Mar Sobral

Summary: There is growing confusion surrounding the term 'functional trait' and its relationship with ecosystem functioning. The author argues that functional traits are defined as traits that affect individual fitness, and proposes that all traits are functional based on an evolutionary rationale that considers the integration of phenotype, environmental variation, and their relationship.

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Article Plant Sciences

Increased seminal root number associated with domestication improves nitrogen and phosphorus acquisition in maize seedlings

Alden C. Perkins et al.

Summary: The research shows that seminal roots can improve the acquisition of nitrogen and phosphorus in maize seedlings, with increased seed size associated with maize domestication possibly facilitating the increase in seminal root number. The study also suggests that the optimal number of seminal roots for nutrient acquisition in teosinte is constrained by its limited seed carbohydrate reserves.

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ANNALS OF BOTANY (2020)

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Complex patterns in tolerance and resistance to pests and diseases underpin the domestication of tomato

Victoria Ferrero et al.

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PLANT JOURNAL (2020)

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Esperanza Martinez-Romero et al.

SYSTEMATIC AND APPLIED MICROBIOLOGY (2020)

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The Impacts of Domestication and Agricultural Practices on Legume Nutrient Acquisition Through Symbiosis With Rhizobia and Arbuscular Mycorrhizal Fungi

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Miquel Nadal et al.

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Susan R. Whitehead et al.

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Plant domestication disrupts biodiversity effects across major crop types

Julia Chacon-Labella et al.

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PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2017)

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Functional Traits Differ between Cereal Crop Progenitors and Other Wild Grasses Gathered in the Neolithic Fertile Crescent

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Shifts in stomatal traits following the domestication of plant species

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Rachel S. Meyer et al.

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The Evolutionary Fate of Phenotypic Plasticity and Functional Traits under Domestication in Manioc: Changes in Stem Biomechanics and the Appearance of Stem Brittleness

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PLOS ONE (2013)

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Article Multidisciplinary Sciences

Wild Pollinators Enhance Fruit Set of Crops Regardless of Honey Bee Abundance

Lucas A. Garibaldi et al.

SCIENCE (2013)

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Pierre-Luc Chagnon et al.

TRENDS IN PLANT SCIENCE (2013)

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Article Genetics & Heredity

Parallel domestication of the Shattering1 genes in cereals

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Douglas B. Kell

ANNALS OF BOTANY (2011)

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Environmental Impact of Different Agricultural Management Practices: Conventional vs. Organic Agriculture

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CRITICAL REVIEWS IN PLANT SCIENCES (2011)

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AMERICAN NATURALIST (2010)

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Agricultural Origins: Centers and Noncenters; A Near Eastern Reappraisal

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Human selection and the relaxation of legume defences against ineffective rhizobia

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PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2007)

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