相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Targeting the IspD Enzyme in the MEP Pathway: Identification of a Novel Fragment Class
Eleonora Diamanti et al.
CHEMMEDCHEM (2022)
Whole-genome sequencing of Mycobacterium tuberculosis for prediction of drug resistance
Luqi Wang et al.
EPIDEMIOLOGY AND INFECTION (2022)
Whole-Genome Sequencing Has the Potential To Improve Treatment for Rifampicin-Resistant Tuberculosis in High-Burden Settings: a Retrospective Cohort Study
Helen Cox et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2022)
Combination of Xpert® MTB/RIF and Determine™ TB-LAM Ag improves the diagnosis of extrapulmonary tuberculosis at Jimma University Medical Center, Oromia, Ethiopia
Asnake Simieneh et al.
PLOS ONE (2022)
Exploiting genomics to mitigate the public health impact of antimicrobial resistance
Claire Waddington et al.
GENOME MEDICINE (2022)
Performance of WHO-Endorsed Rapid Tests for Detection of Susceptibility to First-Line Drugs in Patients with Pulmonary Tuberculosis in Bangladesh
S. M. Mazidur Rahman et al.
DIAGNOSTICS (2022)
Assessment of resistance to second line anti-tubercular drugs by line probe assay at a tertiary care hospital
Santosh Karade et al.
Medical Journal of Dr DY Patil Vidyapeeth (2022)
SAM-TB: a whole genome sequencing data analysis website for detection of Mycobacterium tuberculosis drug resistance and transmission
Tingting Yang et al.
BRIEFINGS IN BIOINFORMATICS (2022)
PulseNet International Survey on the Implementation of Whole Genome Sequencing in Low and Middle-Income Countries for Foodborne Disease Surveillance
Taylor Davedow et al.
FOODBORNE PATHOGENS AND DISEASE (2022)
Detection and characterization of mutations in genes related to isoniazid resistance in Mycobacterium tuberculosis clinical isolates from Iran
Pejman Bakhtiyariniya et al.
MOLECULAR BIOLOGY REPORTS (2022)
Gene evolutionary trajectories in Mycobacterium tuberculosis reveal temporal signs of selection
Alvaro Chiner-Oms et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2022)
World Health Organization recommendations on the treatment of drug-resistant tuberculosis, 2020 update
Fuad Mirzayev et al.
EUROPEAN RESPIRATORY JOURNAL (2021)
Improving tuberculosis surveillance by detecting international transmission using publicly available whole genome sequencing data
Andrea Sanchini et al.
EUROSURVEILLANCE (2021)
Genomic-based surveillance reveals high ongoing transmission of multi-drug-resistant Mycobacterium tuberculosis in Southern Brazil
Richard Steiner Salvato et al.
INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS (2021)
Identification of a predominant genotype of Mycobacterium tuberculosis in Brazilian indigenous population
S. A. Hadi et al.
SCIENTIFIC REPORTS (2021)
Rifampin-resistance-associated mutations in the rifampin-resistance-determining region of the rpoB gene of Mycobacterium tuberculosis clinical isolates in Shanghai, PR China
Yinjuan Guo et al.
JOURNAL OF MEDICAL MICROBIOLOGY (2021)
Phylogenomic analysis and Mycobacterium tuberculosis antibiotic resistance prediction by whole-genome sequencing from clinical isolates of Caldas, Colombia
Lusayda Sanchez-Corrales et al.
PLOS ONE (2021)
Genomic signatures of pre-resistance in Mycobacterium tuberculosis
Arturo Torres Ortiz et al.
NATURE COMMUNICATIONS (2021)
Population structure, biogeography and transmissibility of Mycobacterium tuberculosis
Luca Freschi et al.
NATURE COMMUNICATIONS (2021)
Twelve years of SAMtools and BCFtools
Petr Danecek et al.
GIGASCIENCE (2021)
Value of routine whole genome sequencing for Mycobacterium tuberculosis drug resistance detection
Connie Lam et al.
INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES (2021)
A Bioinformatics Whole-Genome Sequencing Workflow for Clinical Mycobacterium tuberculosis Complex Isolate Analysis, Validated Using a Reference Collection Extensively Characterized with Conventional Methods and In Silico Approaches
Bert Bogaerts et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2021)
Genomic analyses of Mycobacterium tuberculosis from human lung resections reveal a high frequency of polyclonal infections
Miguel Moreno-Molina et al.
NATURE COMMUNICATIONS (2021)
Whole genome analysis of extensively drug resistant Mycobacterium tuberculosis strains in Peru
David Santos-Lazaro et al.
SCIENTIFIC REPORTS (2021)
Pan and Core Genome Analysis of 183 Mycobacterium tuberculosis Strains Revealed a High Inter-Species Diversity among the Human Adapted Strains
Fathiah Zakham et al.
ANTIBIOTICS-BASEL (2021)
Assessment of the GenoType MTBDRsl VER 2.0 compared to the phenotypic drug susceptibility testing and whole genome sequencing for the rapid detection of resistance to fluoroquinolone and second-line injectable drugs among rifampicin-resistant Mycobacterium tuberculosis isolates
Jalil Kardan-Yamchi et al.
ARCHIVES OF MICROBIOLOGY (2021)
Big Three Infectious Diseases: Tuberculosis, Malaria and HIV/AIDS
Parameshwar Makam et al.
CURRENT TOPICS IN MEDICINAL CHEMISTRY (2021)
Correlating genetic mutations with isoniazid phenotypic levels of resistance in Mycobacterium tuberculosis isolates from patients with drug-resistant tuberculosis in a high burden setting
Juliana Maira Watanabe Pinhata et al.
EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES (2021)
Whole-genome analysis of drug-resistant Mycobacterium tuberculosis reveals novel mutations associated with fluoroquinolone resistance
Pratchakan Chaiyachat et al.
INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS (2021)
Drug resistance, fitness and compensatory mutations in Mycobacterium tuberculosis
Amel Kevin Alame Emane et al.
TUBERCULOSIS (2021)
Heterogeneous Streptomycin Resistance Level Among Mycobacterium tuberculosis Strains From the Same Transmission Cluster
Deisy M. G. C. Rocha et al.
FRONTIERS IN MICROBIOLOGY (2021)
The Relation Between the Emergence of Fluoroquinolone Resistance and Fluoroquinolone Exposure in New Cases of Active Pulmonary Tuberculosis
Rahime Aydin Kayali et al.
TURKISH THORACIC JOURNAL (2021)
Recent updates on drug resistance in Mycobacterium tuberculosis
R. Singh et al.
JOURNAL OF APPLIED MICROBIOLOGY (2020)
Whole genome sequencing of Mycobacterium tuberculosis isolates and clinical outcomes of patients treated for multidrug-resistant tuberculosis in Tanzania
Bugwesa Z. Katale et al.
BMC GENOMICS (2020)
Evolution of Mycobacterium tuberculosis complex lineages and their role in an emerging threat of multidrug resistant tuberculosis in Bamako, Mali
Madikay Senghore et al.
SCIENTIFIC REPORTS (2020)
Population structure and genetic diversity of Mycobacterium tuberculosis in Ecuador
Daniel Garzon-Chavez et al.
SCIENTIFIC REPORTS (2020)
Homoplastic single nucleotide polymorphisms contributed to phenotypic diversity in Mycobacterium tuberculosis
Pornpen Tantivitayakul et al.
SCIENTIFIC REPORTS (2020)
Fluoroquinolone resistance and mutational profile of gyrA in pulmonary MDR tuberculosis patients
Saba Kabir et al.
BMC PULMONARY MEDICINE (2020)
Evidence for Expanding the Role of Streptomycin in the Management of Drug-Resistant Mycobacterium tuberculosis
Keira A. Cohen et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2020)
A sister lineage of the Mycobacterium tuberculosis complex discovered in the African Great Lakes region
Jean Claude Semuto Ngabonziza et al.
NATURE COMMUNICATIONS (2020)
Robust barcoding and identification of Mycobacterium tuberculosis lineages for epidemiological and clinical studies
Gary Napier et al.
GENOME MEDICINE (2020)
Pangenome Analysis of Mycobacterium tuberculosis Reveals Core-Drug Targets and Screening of Promising Lead Compounds for Drug Discovery
Hamza Arshad Dar et al.
ANTIBIOTICS-BASEL (2020)
The ATP-Binding Cassette (ABC) Transport Systems in Mycobacterium tuberculosis: Structure, Function, and Possible Targets for Therapeutics
Marcelo Cassio Barreto de Oliveira et al.
BIOLOGY-BASEL (2020)
Whole-Genome Sequencing for Drug Resistance Profile Prediction in Mycobacterium tuberculosis
Sebastian M. Gygli et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2019)
Genetic diversity and drug resistance of Mycobacterium tuberculosis in Ecuador
J. Zurita et al.
INTERNATIONAL JOURNAL OF TUBERCULOSIS AND LUNG DISEASE (2019)
Prevalence, Drug Resistance, and Genotypic Diversity of the Mycobacterium tuberculosis Beijing Family in Ecuador
Daniel Garzon-Chavez et al.
MICROBIAL DRUG RESISTANCE (2019)
Investigating function roles of hypothetical proteins encoded by the Mycobacterium tuberculosis H37Rv genome
Zhiyuan Yang et al.
BMC GENOMICS (2019)
Extensive global movement of multidrug-resistant M. tuberculosis strains revealed by whole-genome analysis
Keira A. Cohen et al.
THORAX (2019)
Exploring the Latin American Mediterranean family and the RDRio lineage in Mycobacterium tuberculosis isolates from Paraguay, Argentina and Venezuela
Chyntia Carolina Diaz Acosta et al.
BMC MICROBIOLOGY (2019)
Whole-Genome Sequencing as Tool for Investigating International Tuberculosis Outbreaks: A Systematic Review
Marieke J. van der Werf et al.
FRONTIERS IN PUBLIC HEALTH (2019)
Genetic Diversity and Molecular Epidemiology of Mycobacterium tuberculosis in Roraima State, Brazil
Mariana Bento Tatara et al.
AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE (2019)
Tuberculosis Genetic Epidemiology: A Latin American Perspective
Marc Woodman et al.
GENES (2019)
SNP-IT Tool for Identifying Subspecies and Associated Lineages of Mycobacterium tuberculosis Complex
Samuel Lipworth et al.
EMERGING INFECTIOUS DISEASES (2019)
Evaluation of Whole-Genome Sequencing for Mycobacterial Species Identification and Drug Susceptibility Testing in a Clinical Setting: a Large-Scale Prospective Assessment of Performance against Line Probe Assays and Phenotyping
T. Phuong Quan et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2018)
Use of whole genome sequencing in surveillance of drug resistant tuberculosis
Ruth McNerney et al.
EXPERT REVIEW OF ANTI-INFECTIVE THERAPY (2018)
Genetic diversity of drug and multidrug-resistant Mycobacterium tuberculosis circulating in Veracruz, Mexico
Daniela Munro-Rojas et al.
PLOS ONE (2018)
The Methylerythritol Phosphate Pathway: Promising Drug Targets in the Fight against Tuberculosis
Xu Wang et al.
ACS INFECTIOUS DISEASES (2018)
Prediction of Susceptibility to First-Line Tuberculosis Drugs by DNA Sequencing
Caroline Allix-Beguec et al.
NEW ENGLAND JOURNAL OF MEDICINE (2018)
Pan-Genomic Study of Mycobacterium tuberculosis Reflecting the Primary/Secondary Genes, Generality/Individuality, and the Interconversion Through Copy Number Variations
Tingting Yang et al.
FRONTIERS IN MICROBIOLOGY (2018)
Global variation in bacterial strains that cause tuberculosis disease: a systematic review and meta-analysis
Kirsten E. Wiens et al.
BMC MEDICINE (2018)
Global expansion of Mycobacterium tuberculosis lineage 4 shaped by colonial migration and local adaptation
Ola B. Brynildsrud et al.
SCIENCE ADVANCES (2018)
Mutations within embCAB Are Associated with Variable Level of Ethambutol Resistance in Mycobacterium tuberculosis Isolates from China
Qing Sun et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2018)
Comprehensive Whole-Genome Sequencing and Reporting of Drug Resistance Profiles on Clinical Cases of Mycobacterium tuberculosis in New York State
Joseph Shea et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2017)
Whole genome sequencing of clinical strains of Mycobacterium tuberculosis from Mumbai, India: A potential tool for determining drug-resistance and strain lineage
Anirvan Chatterjee et al.
TUBERCULOSIS (2017)
Identification of the Mycobacterium tuberculosis Beijing lineage in Ecuador
Patricia Jimenez et al.
BIOMEDICA (2017)
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2016)
Fast and sensitive taxonomic classification for metagenomics with Kaiju
Peter Menzel et al.
NATURE COMMUNICATIONS (2016)
Analysis of Mycobacterium tuberculosis Genotypic Lineage Distribution in Chile and Neighboring Countries
Jaime Lagos et al.
PLOS ONE (2016)
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
Dinghua Li et al.
BIOINFORMATICS (2015)
Roary: rapid large-scale prokaryote pan genome analysis
Andrew J. Page et al.
BIOINFORMATICS (2015)
Co-evolution of Mycobacterium tuberculosis and Homo sapiens
Daniela Brites et al.
IMMUNOLOGICAL REVIEWS (2015)
Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences
Francesc Coll et al.
GENOME MEDICINE (2015)
Mutations Found in embCAB, embR, and ubiA Genes of Ethambutol-Sensitive and -Resistant Mycobacterium tuberculosis Clinical Isolates from China
Yuhui Xu et al.
BIOMED RESEARCH INTERNATIONAL (2015)
Comparative Whole-Genome Analysis of Clinical Isolates Reveals Characteristic Architecture of Mycobacterium tuberculosis Pangenome
Vinita Periwal et al.
PLOS ONE (2015)
PanGP: A tool for quickly analyzing bacterial pan-genome profile
Yongbing Zhao et al.
BIOINFORMATICS (2014)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Population Structure among Mycobacterium tuberculosis Isolates from Pulmonary Tuberculosis Patients in Colombia
Teresa Realpe et al.
PLOS ONE (2014)
Consequences of genomic diversity in Mycobacterium tuberculosis
Mireia Coscolla et al.
SEMINARS IN IMMUNOLOGY (2014)
A robust SNP barcode for typing Mycobacterium tuberculosis complex strains
Francesc Coll et al.
NATURE COMMUNICATIONS (2014)
Kraken: ultrafast metagenomic sequence classification using exact alignments
Derrick E. Wood et al.
GENOME BIOLOGY (2014)
QUAST: quality assessment tool for genome assemblies
Alexey Gurevich et al.
BIOINFORMATICS (2013)
Updating benchtop sequencing performance comparison
Sebastian Juenemann et al.
NATURE BIOTECHNOLOGY (2013)
Genetic Diversity of Mycobacterium tuberculosis in Peru and Exploration of Phylogenetic Associations with Drug Resistance
Patricia Sheen et al.
PLOS ONE (2013)
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
Pablo Cingolani et al.
FLY (2012)
Genetic diversity, population structure and drug resistance of Mycobacterium tuberculosis in Peru
C. A. Taype et al.
INFECTION GENETICS AND EVOLUTION (2012)
SITVITWEB - A publicly available international multimarker database for studying Mycobacterium tuberculosis genetic diversity and molecular epidemiology
Christophe Demay et al.
INFECTION GENETICS AND EVOLUTION (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
The variant call format and VCFtools
Petr Danecek et al.
BIOINFORMATICS (2011)
Multidrug-Resistant Mycobacterium tuberculosis, Southwestern Colombia
Beatriz E. Ferro et al.
EMERGING INFECTIOUS DISEASES (2011)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
The RAST server: Rapid annotations using subsystems technology
Ramy K. Aziz et al.
BMC GENOMICS (2008)
Mycobacterium tuberculosis pathogenesis and molecular determinants of virulence
I Smith
CLINICAL MICROBIOLOGY REVIEWS (2003)
Molecular epidemiology of tuberculosis and other mycobacterial infections: main methodologies and achievements
D van Soolingen
JOURNAL OF INTERNAL MEDICINE (2001)