相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。RS_CRZ1, a C2H2-Type Transcription Factor Is Required for Pathogenesis of Rhizoctonia solani AG1-IA in Tomato
Srayan Ghosh et al.
MOLECULAR PLANT-MICROBE INTERACTIONS (2021)
Do Lytic Polysaccharide Monooxygenases Aid in Plant Pathogenesis and Herbivory?
Guru Jagadeeswaran et al.
TRENDS IN PLANT SCIENCE (2021)
Detection and Quantification of Rhizoctonia solani and Rhizoctonia solani AG1-IB Causing the Bottom Rot of Lettuce in Tissues and Soils by Multiplex qPCR
Therese Wallon et al.
PLANTS-BASEL (2021)
Evolutionary and genomic comparisons of hybrid uninucleate and nonhybrid Rhizoctonia fungi
Cheng Li et al.
COMMUNICATIONS BIOLOGY (2021)
Comparative genome analyses of four rice-infecting Rhizoctonia solani isolates reveal extensive enrichment of homogalacturonan modification genes
Da-Young Lee et al.
BMC GENOMICS (2021)
Comparative Mitogenomic Analysis and the Evolution of Rhizoctonia solani Anastomosis Groups
Runmao Lin et al.
FRONTIERS IN MICROBIOLOGY (2021)
Understanding sheath blight resistance in rice: the road behind and the road ahead
Kutubuddin A. Molla et al.
PLANT BIOTECHNOLOGY JOURNAL (2020)
Comparison of leaf transcriptome in response to Rhizoctonia solani infection between resistant and susceptible rice cultivars
Wei Shi et al.
BMC GENOMICS (2020)
RepeatModeler2 for automated genomic discovery of transposable element families
Jullien M. Flynn et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
SignalP 5.0 improves signal peptide predictions using deep neural networks
Jose Juan Almagro Armenteros et al.
NATURE BIOTECHNOLOGY (2019)
Genome analysis provides insight about pathogenesis of Indian strains of Rhizoctonia solani in rice
Srayan Ghosh et al.
FUNCTIONAL & INTEGRATIVE GENOMICS (2019)
antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline
Kai Blin et al.
NUCLEIC ACIDS RESEARCH (2019)
Host Alternative NADH:Ubiquinone Oxidoreductase Serves as a Susceptibility Factor to Promote Pathogenesis of Rhizoctonia solani in Plants
Ravi Kant et al.
PHYTOPATHOLOGY (2019)
siRNA-Finder (si-Fi) Software for RNAi-Target Design and Off-Target Prediction
Stefanie Lueck et al.
FRONTIERS IN PLANT SCIENCE (2019)
The Network of Cancer Genes (NCG): a comprehensive catalogue of known and candidate cancer genes from cancer sequencing screens
Dimitra Repana et al.
GENOME BIOLOGY (2019)
The genomic determinants of adaptive evolution in a fungal pathogen
Jonathan Grandaubert et al.
EVOLUTION LETTERS (2019)
Origin of angiosperms and the puzzle of the Jurassic gap
Hong-Tao Li et al.
NATURE PLANTS (2019)
Rhizoctonia solani: taxonomy, population biology and management of rhizoctonia seedling disease of soybean
O. O. Ajayi-Oyetunde et al.
PLANT PATHOLOGY (2018)
Morphological and molecular variability among Indian isolates of Rhizoctonia solani causing banded leaf and sheath blight in maize
Vimla Singh et al.
EUROPEAN JOURNAL OF PLANT PATHOLOGY (2018)
These aren't the loci you'e looking for: Principles of effective SNP filtering for molecular ecologists
Shannon J. O'Leary et al.
MOLECULAR ECOLOGY (2018)
Identification of candidate pathogenicity determinants of Rhizoctonia solani AG1-IA, which causes sheath blight disease in rice
Srayan Ghosh et al.
CURRENT GENETICS (2018)
Evolution and genome architecture in fungal plant pathogens
Mareike Moeller et al.
NATURE REVIEWS MICROBIOLOGY (2017)
Insight into the Recent Genome Duplication of the Halophilic Yeast Hortaea werneckii: Combining an Improved Genome with Gene Expression and Chromatin Structure
Sunita Sinha et al.
G3-GENES GENOMES GENETICS (2017)
Alterations in rice chloroplast integrity, photosynthesis and metabolome associated with pathogenesis of Rhizoctonia solani
Srayan Ghosh et al.
SCIENTIFIC REPORTS (2017)
Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication
Luis M. Corrochano et al.
CURRENT BIOLOGY (2016)
Transposons passively and actively contribute to evolution of the two-speed genome of a fungal pathogen
Luigi Faino et al.
GENOME RESEARCH (2016)
Draft genome sequence of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB strain BBA69670
Daniel Wibberg et al.
JOURNAL OF BIOTECHNOLOGY (2016)
Phased diploid genome assembly with single-molecule real-time sequencing
Chen-Shan Chin et al.
NATURE METHODS (2016)
Evolution of Gene Duplication in Plants
Nicholas Panchy et al.
PLANT PHYSIOLOGY (2016)
JBrowse: a dynamic web platform for genome visualization and analysis
Robert Buels et al.
GENOME BIOLOGY (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
HERV-K(HML-2) rec and np9 transcripts not restricted to disease but present in many normal human tissues
Katja Schmitt et al.
MOBILE DNA (2015)
InterProScan 5: genome-scale protein function classification
Philip Jones et al.
BIOINFORMATICS (2014)
Identification and functional analysis of AG1-IA specific genes of Rhizoctonia solani
Srayan Ghosh et al.
CURRENT GENETICS (2014)
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
Bruce J. Walker et al.
PLOS ONE (2014)
Genome Sequencing and Comparative Genomics of the Broad Host-Range Pathogen Rhizoctonia solani AG8
James K. Hane et al.
PLOS GENETICS (2014)
Draft Genome Sequence of the Plant-Pathogenic Soil Fungus Rhizoctonia solani Anastomosis Group 3 Strain Rhs1AP
Marc A. Cubeta et al.
GENOME ANNOUNCEMENTS (2014)
Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14
Daniel Wibberg et al.
JOURNAL OF BIOTECHNOLOGY (2013)
The wheat powdery mildew genome shows the unique evolution of an obligate biotroph
Thomas Wicker et al.
NATURE GENETICS (2013)
The Population Genetic Structure of Rhizoctonia solani AG-3PT from Potato in the Colombian Andes
Rosa L. Ferrucho et al.
PHYTOPATHOLOGY (2013)
The evolution and pathogenic mechanisms of the rice sheath blight pathogen
Aiping Zheng et al.
NATURE COMMUNICATIONS (2013)
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
Pablo Cingolani et al.
FLY (2012)
Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses
Richard J. O'Connell et al.
NATURE GENETICS (2012)
Regulated functional alternative splicing in Drosophila
Julian P. Venables et al.
NUCLEIC ACIDS RESEARCH (2012)
First Report of Rhizoctonia solani AG2-2IIIB Infecting Potato Stems and Stolons in the United States
J. W. Woodhall et al.
PLANT DISEASE (2012)
Silencing of the Rac1 GTPase MtROP9 in Medicago truncatula Stimulates Early Mycorrhizal and Oomycete Root Colonizations But Negatively Affects Rhizobial Infection
Leonard Muriithi Kiirika et al.
PLANT PHYSIOLOGY (2012)
The Accessory Genome as a Cradle for Adaptive Evolution in Pathogens
Daniel Croll et al.
PLOS PATHOGENS (2012)
ProtTest 3: fast selection of best-fit models of protein evolution
Diego Darriba et al.
BIOINFORMATICS (2011)
Enhancements to the ADMIXTURE algorithm for individual ancestry estimation
David H. Alexander et al.
BMC BIOINFORMATICS (2011)
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
GENOME RESEARCH (2010)
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium
Li-Jun Ma et al.
NATURE (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Interactions between cauliflower and Rhizoctonia anastomosis groups with different levels of aggressiveness
Joke Pannecoucque et al.
BMC PLANT BIOLOGY (2009)
Circos: An information aesthetic for comparative genomics
Martin Krzywinski et al.
GENOME RESEARCH (2009)
Genetic Diversity of Iranian AG1-IA Isolates of Rhizoctonia solani, the Cause of Rice Sheath Blight, Using Morphological and Molecular Markers
Mahdiyeh Khodayari et al.
JOURNAL OF PHYTOPATHOLOGY (2009)
Genomic Analysis of the Basal Lineage Fungus Rhizopus oryzae Reveals a Whole-Genome Duplication
Li-Jun Ma et al.
PLOS GENETICS (2009)
Evolutionary history of the ancient cutinase family in five filamentous Ascomycetes reveals differential gene duplications and losses and in Magnaporthe grisea shows evidence of sub- and neo-functionalization
Pari Skamnioti et al.
NEW PHYTOLOGIST (2008)
Morphological and pathological variability in rice isolates of Rhizoctonia solani and molecular analysis of their genetic variability
S. Guleria et al.
JOURNAL OF PHYTOPATHOLOGY (2007)
TASSEL: software for association mapping of complex traits in diverse samples
Peter J. Bradbury et al.
BIOINFORMATICS (2007)
Natural history and evolutionary principles of gene duplication in fungi
Ilan Wapinski et al.
NATURE (2007)
Advantages of combined transmembrane topology and signal peptide prediction -: the Phobius web server
Lukas Kaell et al.
NUCLEIC ACIDS RESEARCH (2007)
Locating proteins in the cell using TargetP, SignalP and related tools
Olof Emanuelsson et al.
NATURE PROTOCOLS (2007)
Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis
Matthew A. Campbell et al.
BMC GENOMICS (2006)
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis
JM Duarte et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
The role of transposable element clusters in genome evolution and loss of synteny in the rice blast fungus Magnaporthe oryzae
MR Thon et al.
GENOME BIOLOGY (2006)
A novel method for prokaryotic promoter prediction based on DNA stability
A Kanhere et al.
BMC BIOINFORMATICS (2005)
Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
M Kellis et al.
NATURE (2004)
A sensitive predictor for potential GPI lipid modification sites in fungal protein sequences and its application to genome-wide studies for Aspergillus nidulans, Candida albicans Neurospora crassa, Saccharomyces cerevisiae and Schizosaccharomyces pombe
B Eisenhaber et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
Gene prediction with a hidden Markov model and a new intron submodel
Mario Stanke et al.
BIOINFORMATICS (2003)
Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method
KJ Livak et al.
METHODS (2001)
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
A Krogh et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)