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JBrowse Jupyter: a Python interface to JBrowse 2

BIOINFORMATICS (2023)

igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV)

James T. Robinson et al.

Summary: igv.js is a JavaScript implementation of the Integrative Genomics Viewer (IGV) that can be easily embedded into any web page with a single line of code and does not have any external dependencies. The viewer runs entirely in the web browser without the need for a backend server or data pre-processing.

BIOINFORMATICS (2023)

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Article Computer Science, Software Engineering

Gosling: A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization

Sehi L'Yi et al.

Summary: This article introduces an interactive and scalable grammar called Gosling for genomics data visualization, along with its accompanying JavaScript toolkit Gosling.js. The grammar balances expressiveness for comprehensive multi-scale genomics visualizations with accessibility for domain scientists, addressing the issue of limited customization in existing tools.

IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS (2022)

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Article Biochemical Research Methods

JBrowseR: an R interface to the JBrowse 2 genome browser

Elliot A. Hershberg et al.

Summary: This study developed an R package that provides an interface to the JBrowse 2 genome browser, allowing configuration and customization entirely with R code. The browser can be deployed from the R console and embedded in Shiny applications or R Markdown documents.

BIOINFORMATICS (2021)

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Article Biochemical Research Methods