相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Context-dependent DNA polymerization effects can masquerade as DNA modification signals
Yusuke Takahashi et al.
BMC GENOMICS (2022)
Conserved DNA Methyltransferases: A Window into Fundamental Mechanisms of Epigenetic Regulation in Bacteria
Pedro H. Oliveira et al.
TRENDS IN MICROBIOLOGY (2021)
Nosocomial Infection
Marin H. Kollef et al.
CRITICAL CARE MEDICINE (2021)
The methylation- independent mismatch repair machinery in Pseudomonas aeruginosa
Yue Yuan On et al.
MICROBIOLOGY-SGM (2021)
Application of a strain- level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak
Florence E. Buytaers et al.
MICROBIAL GENOMICS (2021)
Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies
Florence E. Buytaers et al.
FRONTIERS IN MICROBIOLOGY (2021)
Host DNA depletion efficiency of microbiome DNA enrichment methods in infected tissue samples
Fatemah Sadeghpour Heravi et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2020)
Salmonella enterica and Escherichia coli in Wheat Flour: Detection and Serotyping by a Quasimetagenomic Approach Assisted by Magnetic Capture, Multiple-Displacement Amplification, and Real-Time Sequencing
Fereidoun Forghani et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2020)
The DNA methylation landscape of giant viruses
Sandra Jeudy et al.
NATURE COMMUNICATIONS (2020)
Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study
Assia Saltykova et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2020)
A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine
Florence E. Buytaers et al.
MICROORGANISMS (2020)
In vitro Type II Restriction of Bacteriophage DNA With Modified Pyrimidines
Kiersten Flodman et al.
FRONTIERS IN MICROBIOLOGY (2020)
Comparison of the sequencing bias of currently available library preparation kits for Illumina sequencing of bacterial genomes and metagenomes
Mitsuhiko P. Sato et al.
DNA RESEARCH (2019)
A Historical Review on Antibiotic Resistance of Foodborne Campylobacter
Yichao Yang et al.
FRONTIERS IN MICROBIOLOGY (2019)
Sources of artifact in measurements of 6mA and 4mC abundance in eukaryotic genomic DNA
Zach K. O'Brown et al.
BMC GENOMICS (2019)
The impact of DNA methylation in Alphaproteobacteria
Annabelle Mouammine et al.
MOLECULAR MICROBIOLOGY (2018)
Methylation-based enrichment facilitates low-cost, noninvasive genomic scale sequencing of populations from feces
Kenneth L. Chiou et al.
SCIENTIFIC REPORTS (2018)
Improving saliva shotgun metagenomics by chemical host DNA depletion
Clarisse A. Marotz et al.
MICROBIOME (2018)
Epigenetic Segregation of Microbial Genomes from Complex Samples Using Restriction Endonucleases HpaII and McrB
Guohong Liu et al.
PLOS ONE (2016)
Genomic Epidemiology: Whole-Genome-Sequencing-Powered Surveillance and Outbreak Investigation of Foodborne Bacterial Pathogens
Xiangyu Deng et al.
ANNUAL REVIEW OF FOOD SCIENCE AND TECHNOLOGY, VOL 7 (2016)
CRISPR-Based Typing and Next-Generation Tracking Technologies
Rodolphe Barrangou et al.
ANNUAL REVIEW OF FOOD SCIENCE AND TECHNOLOGY, VOL 7 (2016)
Editorial: Emerging Approaches for Typing, Detection, Characterization, and Traceback of Escherichia coli
Pina M. Fratamico et al.
FRONTIERS IN MICROBIOLOGY (2016)
Significance of whole genome sequencing for surveillance, source attribution and microbial risk assessment of foodborne pathogens
Eelco Franz et al.
CURRENT OPINION IN FOOD SCIENCE (2016)
Comparative Analysis of Subtyping Methods against a Whole-Genome-Sequencing Standard for Salmonella enterica Serotype Enteritidis
Xiangyu Deng et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2015)
Choice of Reference Sequence and Assembler for Alignment of Listeria monocytogenes Short-Read Sequence Data Greatly Influences Rates of Error in SNP Analyses
Arthur W. Pightling et al.
PLOS ONE (2014)
Selective Microbial Genomic DNA Isolation Using Restriction Endonucleases
Helen E. Barnes et al.
PLOS ONE (2014)
Genome Sequence of Escherichia coli O157:H7 Strain 2886-75, Associated with the First Reported Case of Human Infection in the United States
Fatemeh Sanjar et al.
GENOME ANNOUNCEMENTS (2014)
A Method for Selectively Enriching Microbial DNA from Contaminating Vertebrate Host DNA
George R. Feehery et al.
PLOS ONE (2013)
Conservation of Dcm-mediated cytosine DNA methylation in Escherichia coli
Kevin T. Militello et al.
FEMS MICROBIOLOGY LETTERS (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing
Gang Fang et al.
NATURE BIOTECHNOLOGY (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Acinetobacter baumannii An emerging opportunistic pathogen
Aoife Howard et al.
VIRULENCE (2012)
N6-methyl-adenine:: an epigenetic signal for DNA-protein interactions
D Wion et al.
NATURE REVIEWS MICROBIOLOGY (2006)
Dam methylation: coordinating cellular processes
A Lobner-Olesen et al.
CURRENT OPINION IN MICROBIOLOGY (2005)