相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。De novo design of a four-fold symmetric TIM-barrel protein with atomic-level accuracy
Po-Ssu Huang et al.
NATURE CHEMICAL BIOLOGY (2016)
The Ribosome Challenge to the RNA World
Jessica C. Bowman et al.
JOURNAL OF MOLECULAR EVOLUTION (2015)
LUCApedia: a database for the study of ancient life
Aaron David Goldman et al.
NUCLEIC ACIDS RESEARCH (2013)
The Phylogenomic Roots of Modern Biochemistry: Origins of Proteins, Cofactors and Protein Biosynthesis
Gustavo Caetano-Anolles et al.
JOURNAL OF MOLECULAR EVOLUTION (2012)
Reorganizing the protein space at the Universal Protein Resource (UniProt)
Rolf Apweiler et al.
NUCLEIC ACIDS RESEARCH (2012)
KEGG for integration and interpretation of large-scale molecular data sets
Minoru Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2012)
The Enzymatic and Metabolic Capabilities of Early Life
Aaron David Goldman et al.
PLOS ONE (2012)
Real-Time Evolution of New Genes by Innovation, Amplification, and Divergence
Joakim Nasvall et al.
SCIENCE (2012)
Oxytricha as a modern analog of ancient genome evolution
Aaron David Goldman et al.
TRENDS IN GENETICS (2012)
How did LUCA make a living? Chemiosmosis in the origin of life
Nick Lane et al.
BIOESSAYS (2010)
The evolution and functional repertoire of translation proteins following the origin of life
Aaron D. Goldman et al.
BIOLOGY DIRECT (2010)
Computational and Experimental Evidence for the Evolution of a (βα)8-Barrel Protein from an Ancestral Quarter-Barrel Stabilised by Disulfide Bonds
Markus Richter et al.
JOURNAL OF MOLECULAR BIOLOGY (2010)
I-TASSER: a unified platform for automated protein structure and function prediction
Ambrish Roy et al.
NATURE PROTOCOLS (2010)
On the origin of life in the Zinc world. 2. Validation of the hypothesis on the photosynthesizing zinc sulfide edifices as cradles of life on Earth
Armen Y. Mulkidjanian et al.
BIOLOGY DIRECT (2009)
The origin and evolution of modern metabolism
Gustavo Caetano-Anolles et al.
INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY (2009)
Evolution of biomolecular networks - lessons from metabolic and protein interactions
Takuji Yamada et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2009)
I-TASSER server for protein 3D structure prediction
Yang Zhang
BMC BIOINFORMATICS (2008)
Data growth and its impact on the SCOP database: new developments
Antonina Andreeva et al.
NUCLEIC ACIDS RESEARCH (2008)
Reductive evolution of architectural repertoires in proteomes and the birth of the tripartite world
Minglei Wang et al.
GENOME RESEARCH (2007)
The origin of modern metabolic networks inferred from phylogenomic analysis of protein architecture
Gustavo Caetano-Anolles et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
The very early stages of biological evolution and the nature of the last common ancestor of the three major cell domains
Arturo Becerra et al.
ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS (2007)
MANET:: tracing evolution of protein architecture in metabolic networks
Hee Shin Kim et al.
BMC BIOINFORMATICS (2006)
One-step, regioselective synthesis of up to 50-mers of RNA oligomers by montmorillonite catalysis
Wenhua Huang et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2006)
A minimal estimate for the gene content of the last universal common ancestor - exobiology from a terrestrial perspective
CA Ouzounis et al.
RESEARCH IN MICROBIOLOGY (2006)
How Earth's atmosphere evolved to an oxic state: A status report
DC Catling et al.
EARTH AND PLANETARY SCIENCE LETTERS (2005)
Closed loops of TIM barrel protein fold
ZM Frenkel et al.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2005)
Phylogeny determined by protein domain content
S Yang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
TM-align: a protein structure alignment algorithm based on the TM-score
Y Zhang et al.
NUCLEIC ACIDS RESEARCH (2005)
Mimicking enzyme evolution by generating new (βα)8-barrels from (βα)4-half-barrels
B Hocker et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
AdoMet radical proteins - from structure to evolution - alignment of divergent protein sequences reveals strong secondary structure element conservation
Y Nicolet et al.
NUCLEIC ACIDS RESEARCH (2004)
A possible primordial peptide cycle
C Huber et al.
SCIENCE (2003)
Emergence of diverse biochemical activities in evolutionarily conserved structural scaffolds of proteins
V Anantharaman et al.
CURRENT OPINION IN CHEMICAL BIOLOGY (2003)
The origin of DNA genomes and DNA replication proteins
P Forterre
CURRENT OPINION IN MICROBIOLOGY (2002)
One fold with many functions: The evolutionary relationships between TIM barrel families based on their sequences, structures and functions
N Nagano et al.
JOURNAL OF MOLECULAR BIOLOGY (2002)
Ribonucleotide reductases:: Divergent evolution of an ancient enzyme
E Torrents et al.
JOURNAL OF MOLECULAR EVOLUTION (2002)
Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure
J Gough et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
Divergent evolution of (βα)8-barrel enzymes
M Henn-Sax et al.
BIOLOGICAL CHEMISTRY (2001)
Homology among (βα)8 barrels:: Implications for the evolution of metabolic pathways
RR Copley et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
The Protein Data Bank
HM Berman et al.
NUCLEIC ACIDS RESEARCH (2000)
Structural evidence for evolution of the beta/alpha barrel scaffold by gene duplication and fusion
D Lang et al.
SCIENCE (2000)
分享论文
