4.7 Article

An Experimental Framework for Developing Point-of-Need Biosensors: Connecting Bio-Layer Interferometry and Electrochemical Impedance Spectroscopy

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Trends in lipase engineering for enhanced biocatalysis

Surabhi Soni

Summary: Lipases are considered as key biocatalysts in lipid modification business due to their versatility and properties, and the demand for novel, low-cost lipases with better properties is increasing. Protein engineering strategies in collaboration with the discovery of new lipases can lead to tailor-made enzymes with specific characteristics.

BIOTECHNOLOGY AND APPLIED BIOCHEMISTRY (2022)

Article Engineering, Environmental

Electrochemical sensors for the detection of SARS-CoV-2 virus

Neeraj Kumar et al.

Summary: This review covers various methods for detecting COVID-19, including rapid antigen tests, RT-PCR, and electrochemical sensors, focusing on the development and application of electrochemical sensors for rapid monitoring and detection of SARS-CoV-2. It also compares and assesses their detection limits, sensitivities, and specificities for the identification and monitoring of COVID-19.

CHEMICAL ENGINEERING JOURNAL (2022)

Review Agriculture, Multidisciplinary

Integration of Molecular Docking Analysis and Molecular Dynamics Simulations for Studying Food Proteins and Bioactive Peptides

Abraham Vidal-Limon et al.

Summary: The use of in silico tools, such as molecular docking, to study biological activity of proteins and peptides can sometimes produce results that do not correlate with actual experimental binding affinities. Molecular dynamics simulations (MDS) offer a solution to overcome sampling limitations in docking analysis and provide valuable information in deciphering functional mechanisms of proteins and peptides. This review discusses the traditional use of in silico models, like molecular docking, and highlights the importance of MDS in predicting structural and functional dynamics of food proteins and bioactive peptides.

JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY (2022)

Review Chemistry, Analytical

Critical evaluation of aptamer binding for biosensor designs

Yichen Zhao et al.

Summary: Over the past three decades, aptamer-based biosensors have been extensively studied. This article reviews recent papers that question the binding ability of popular aptamers and provides insights into the reasons for false positive results. It also highlights the importance of carefully designed controls and immobilized libraries for obtaining high-quality aptamers. The findings emphasize the need for validated aptamers in order to achieve meaningful results in biosensor design.

TRAC-TRENDS IN ANALYTICAL CHEMISTRY (2022)

Article Biochemistry & Molecular Biology

A guide to the Michaelis-Menten equation: steady state and beyond

Bharath Srinivasan

Summary: The Michaelis-Menten equation is a cornerstone in enzymology, with its historical context and assumptions deserving closer examination. The mathematical curve rectangular hyperbola, representing the equation, is ubiquitous in biological systems. Researchers are striving to move past the steady-state approach and Michaelis-Menten equation towards more advanced kinetic analyses for a greater understanding of enzyme kinetics and catalysis.

FEBS JOURNAL (2022)

Article Engineering, Environmental

A biolayer interferometry-based, aptamer-antibody receptor pair biosensor for real-time, sensitive, and specific detection of the disease biomarker TNF-α

Shunxiang Gao et al.

Summary: This study presents a biosensor-based detection method for sensitive, specific, and rapid monitoring of TNF-alpha. The biosensor exhibited a wide detection range and good reproducibility, making it a promising approach for clinical applications.

CHEMICAL ENGINEERING JOURNAL (2022)

Review Virology

Applications of Surface Plasmon Resonance and Biolayer Interferometry for Virus-Ligand Binding

Shruthi Murali et al.

Summary: This review summarizes and evaluates the applications of surface plasmon resonance and biolayer interferometry, two commonly used real-time and label-free assays, in studies on virus-ligand interactions and virus-like particle-ligand binding. By examining and assessing the use of these methods, this review guides the field towards applying these robust techniques in whole virus-based studies.

VIRUSES-BASEL (2022)

Article Biology

Drug targeting Nsp1-ribosomal complex shows antiviral activity against SARS-CoV-2

Mohammad Afsar et al.

Summary: In this study, it was discovered that montelukast sodium hydrate has a strong binding affinity to the Nsp1 protein of SARS-CoV-2 and can inhibit the inhibitory effect of Nsp1 on host protein synthesis. Additionally, montelukast sodium hydrate also shows antiviral activity against SARS-CoV-2.
Review Biochemical Research Methods

Protein engineering for electrochemical biosensors

Zhiguang Zhu et al.

Summary: The development of electrochemical biosensors has received significant attention, with protein engineering being used to enhance the properties of redox enzymes for applicable biosensors. This review focuses on recent advances in protein engineering for improving enzymatic catalysis, facilitating electron transfer and enzyme immobilization, and constructing allosteric protein biosensors. The pros and cons of different protein engineering strategies are briefly discussed, along with future perspectives.

CURRENT OPINION IN BIOTECHNOLOGY (2022)

Article Biotechnology & Applied Microbiology

An outlook on electrochemical approaches for molecular diagnostics assays and discussions on the limitations of miniaturized technologies for point-of-care devices

Lafs C. Lopes et al.

Summary: This article reviews the challenges of designing improved point-of-care (PoC) molecular diagnostic devices and discusses the limitations of standard technologies. It also explores the strategies for developing portable biosensors and reliable commercial PoC devices.

SENSORS AND ACTUATORS REPORTS (2022)

Article Biochemical Research Methods

Biolayer interferometry provides a robust method for detecting DNA binding small molecules in microbial extracts

Ross D. Overacker et al.

Summary: DNA replication is a critical point of therapeutic intervention for many cancer types, with several small molecules targeting DNA developed into clinically used antitumor agents. Natural product sources contain a vast number of DNA binding small molecules, but isolating and identifying these molecules is challenging. The study explored the use of biolayer interferometry (BLI) as a tool for rapidly screening natural product sources for DNA targeting small molecules.

ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2021)

Article Biophysics

FEAST of biosensors: Food, environmental and agricultural sensing technologies (FEAST) in North America

Eric S. McLamore et al.

Summary: The biosensor research in North America faces challenges and opportunities, calling for platform approaches including tools supporting interoperability, open-source analytics tools, data algorithms, and sensor designs inspired by usage. The analysis focused on mobile devices and phone-based biosensors to enhance decision support. Results show a concentration on fundamental platform development and material characterization in biosensor research, with optical transduction being predominant in food and environmental applications, while electrochemical transduction is common in agricultural applications, with limited use of mobile platforms.

BIOSENSORS & BIOELECTRONICS (2021)

Review Chemistry, Medicinal

Explicit Treatment of Non-Michaelis-Menten and Atypical Kinetics in Early Drug Discovery**

Bharath Srinivasan

Summary: Biological systems are highly regulated and resistant to sudden perturbations, but traditional enzyme kinetics analysis may not be sufficient for complex systems. New methods are required to study enzyme kinetics that do not conform to classical rules in order to effectively screen small-molecule inhibitors for desired physiological outcomes.

CHEMMEDCHEM (2021)

Article Biophysics

Facile and rapid detection of SARS-CoV-2 antibody based on a noncompetitive fluorescence polarization immunoassay in human serum samples

Keine Nishiyama et al.

Summary: This study presents an analytical method using fluorescence polarization immunoassay (FPIA) for rapid and quantitative detection of SARS-CoV-2 antibody in human serum. The FPIA system showed high accuracy in discriminating COVID-19 positive or negative serum samples. The total measurement time was about 20 minutes, and a serum volume of 0.25 μL was required, making it a rapid and convenient method for quantification of SARS-CoV-2 antibody.

BIOSENSORS & BIOELECTRONICS (2021)

Article Biophysics

Rational design of direct electron transfer type L-lactate dehydrogenase for the development of multiplexed biosensor

Kentaro Hiraka et al.

Summary: This study successfully developed the first dual sensing system for lactate and glucose based on DET-type enzymes, enhancing detection range and reducing substrate inhibition through fusion enzymes and mutation. The developed sensor exhibited excellent performance in artificial sweat, enabling simultaneous detection of lactate and glucose.

BIOSENSORS & BIOELECTRONICS (2021)

Article Multidisciplinary Sciences

De novo design of modular and tunable protein biosensors

Alfredo Quijano-Rubio et al.

Summary: Protein switches have been repurposed for biosensor development by inverting the flow of information, creating modular molecular devices with a closed dark state and an open luminescent state. These sensors, based on thermodynamic coupling, require only one target binding domain for direct readout in solution, allowing for the detection of various molecules clinically, including the SARS-CoV-2 spike protein with high sensitivity and a 50-fold higher luminescence signal than background level. The modularity and sensitivity of this platform enable rapid sensor construction for a wide range of analytes, demonstrating the power of de novo protein design in creating multi-state protein systems with new functions.

NATURE (2021)

Article Chemistry, Analytical

Developing an Optical Interferometric Detection Method based biosensor for detecting specific SARS-CoV-2 immunoglobulins in Serum and Saliva, and their corresponding ELISA correlation

A. M. M. Murillo et al.

Summary: The paper presents a rapid, accurate, and cost-effective method for detecting antibodies against SARS-CoV-2, which can be used periodically for early detection, surveillance, immunity detection, and control of COVID-19 spread. The results obtained using this method were compared with those obtained using the traditional ELISA method.

SENSORS AND ACTUATORS B-CHEMICAL (2021)

Article Pharmacology & Pharmacy

Corilagin inhibits SARS-CoV-2 replication by targeting viral RNA-dependent RNA polymerase

Quanjie Li et al.

Summary: Corilagin has been identified as a non-nucleoside inhibitor of SARS-CoV-2 RdRp, effectively inhibiting polymerase activity and showing potential therapeutic effects against SARS-CoV-2 infection. Combining corilagin with remdesivir also enhances the efficacy against SARS-CoV-2 RdRp.

ACTA PHARMACEUTICA SINICA B (2021)

Article Biophysics

Electrochemical diagnostics of infectious viral diseases: Trends and challenges

K. Yugender Goud et al.

Summary: Infectious diseases caused by viruses have the potential to lead to undesired pandemics, impacting global population and normal life function. Timely detection, treatment, isolation and prevention of spreading infectious diseases are critical to avoid global impairment of life. This review article emphasizes recent advancements in electrochemical diagnostics of life-threatening viruses and highlights challenges in translating laboratory research to real-world device applications and prospects for commercialization of electrochemical diagnostic devices.

BIOSENSORS & BIOELECTRONICS (2021)

Article Biochemical Research Methods

In silico binding profile characterization of SARS-CoV-2 spike protein and its mutants bound to human ACE2 receptor

Yuzhao Zhang et al.

Summary: This study investigated the dynamics and structures of the complexes of SARS-CoV-2 spike RBDs and hACE2 through molecular dynamics simulation, uncovering enhanced binding affinities of certain mutant types with hACE2. The computational protocol provided a reliable method to assess RBD mutations and guide the design of future drugs or vaccines.

BRIEFINGS IN BIOINFORMATICS (2021)

Article Biochemistry & Molecular Biology

Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures

David Sehnal et al.

Summary: Large biomolecular structures are being determined experimentally using established techniques such as crystallography and electron microscopy, with performance requirements for visualization and analysis tools increasing rapidly. The Mol* Viewer is an advanced online web-native 3D visualization tool that allows visualization of complex structures, and is the primary tool used by PDBe and RCSB PDB.

NUCLEIC ACIDS RESEARCH (2021)

Review Medicine, General & Internal

The PRISMA 2020 statement: an updated guideline for reporting systematic reviews

Matthew J. Page et al.

Summary: The PRISMA statement was designed to help systematic reviewers transparently report the purpose, methods, and findings of their reviews. The updated PRISMA 2020 statement includes new reporting guidance, a 27-item checklist, an abstract checklist, and revised flow diagrams for reviews.

BMJ-BRITISH MEDICAL JOURNAL (2021)

Article Biochemical Research Methods

waveRAPID-A Robust Assay for High-Throughput Kinetic Screens with the Creoptix WAVEsystem

Oender Kartal et al.

Summary: Surface-based biophysical methods like SPR and GCI are widely used in drug discovery, with the novel technology waveRAPID offering up to a 10-fold increase in throughput through a single sample injection method. This method's ability to determine kinetics from a single well makes it uniquely suitable for kinetic screening.

SLAS DISCOVERY (2021)

Article Biochemistry & Molecular Biology

The strengths and limitations of using biolayer interferometry to monitor equilibrium titrations of biomolecules

Chamitha J. Weeramange et al.

PROTEIN SCIENCE (2020)

Article Multidisciplinary Sciences

Structural basis for the recognition of SARS-CoV-2 by full-length human ACE2

Renhong Yan et al.

SCIENCE (2020)

Article Biochemistry & Molecular Biology

A Multibasic Cleavage Site in the Spike Protein of SARS-CoV-2 Is Essential for Infection of Human Lung Cells

Markus Hoffmann et al.

MOLECULAR CELL (2020)

Article Multidisciplinary Sciences

Structural basis of receptor recognition by SARS-CoV-2

Jian Shang et al.

NATURE (2020)

Article Biology

How to measure and evaluate binding affinities

Inga Jarmoskaite et al.

Article Immunology

ACE2, Much More Than Just a Receptor for SARS-COV-2

Lobelia Samavati et al.

FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2020)

Article Cardiac & Cardiovascular Systems

SARS-CoV-2 receptor ACE2-dependent implications on the cardiovascular system: From basic science to clinical implications

Sonja Gross et al.

JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY (2020)

Article Multidisciplinary Sciences

Molecular interaction and inhibition of SARS-CoV-2 binding to the ACE2 receptor

Jinsung Yang et al.

NATURE COMMUNICATIONS (2020)

Article Multidisciplinary Sciences

Rational design of DNA nanostructures for single molecule biosensing

Mukhil Raveendran et al.

NATURE COMMUNICATIONS (2020)

Review Chemistry, Analytical

Optical biosensors: an exhaustive and comprehensive review

Chen Chen et al.

ANALYST (2020)

Review Engineering, Biomedical

Electrochemical biosensors: perspective on functional nanomaterials for on-site analysis

Il-Hoon Cho et al.

BIOMATERIALS RESEARCH (2020)

Article Biochemistry & Molecular Biology

A live cell NanoBRET binding assay allows the study of ligand-binding kinetics to the adenosine A3 receptor

Monica Bouzo-Lorenzo et al.

PURINERGIC SIGNALLING (2019)

Review Chemistry, Analytical

SNAPS: Sensor Analytics Point Solutions for Detection and Decision Support Systems

Eric S. McLamore et al.

SENSORS (2019)

Review Multidisciplinary Sciences

Membrane protein-based biosensors

Nobuo Misawa et al.

JOURNAL OF THE ROYAL SOCIETY INTERFACE (2018)

Article Chemistry, Analytical

A biolayer interferometry-based competitive biosensor for rapid and sensitive detection of saxitoxin

Shunxiang Gao et al.

SENSORS AND ACTUATORS B-CHEMICAL (2017)

Article Cell Biology

Mechanism of β-actin mRNA Recognition by ZBP1

Giuseppe Nicastro et al.

CELL REPORTS (2017)

Review Food Science & Technology

Emerging Biorecognition and Transduction Schemes for Rapid Detection of Pathogenic Bacteria in Food

Diana C. Vanegas et al.

COMPREHENSIVE REVIEWS IN FOOD SCIENCE AND FOOD SAFETY (2017)

Review Biochemistry & Molecular Biology

Optical biosensors

Pavel Damborsky et al.

BIOSENSOR TECHNOLOGIES FOR DETECTION OF BIOMOLECULES (2016)

Review Biochemistry & Molecular Biology

Electrochemical biosensors and nanobiosensors

Jules L. Hammond et al.

BIOSENSOR TECHNOLOGIES FOR DETECTION OF BIOMOLECULES (2016)

Review Biochemistry & Molecular Biology

Insights into Protein-Ligand Interactions: Mechanisms, Models, and Methods

Xing Du et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2016)

Article Biochemistry & Molecular Biology

Engineering and characterization of fluorogenic glycine riboswitches

Simon Ketterer et al.

NUCLEIC ACIDS RESEARCH (2016)

Review Pharmacology & Pharmacy

The MM/PBSA and MM/GBSA methods to estimate ligand-binding affinities

Samuel Genheden et al.

EXPERT OPINION ON DRUG DISCOVERY (2015)

Article Engineering, Electrical & Electronic

High Sensitivity Fiber Laser Temperature Sensor

Alejandro Martinez-Rios et al.

IEEE SENSORS JOURNAL (2015)

Article Multidisciplinary Sciences

In vitro Selection and Interaction Studies of a DNA Aptamer Targeting Protein A

Regina Stoltenburg et al.

PLOS ONE (2015)

Article Chemistry, Analytical

Rapid and sensitive detection of norovirus antibodies in human serum with a biolayer interferometry biosensor

Sanna Auer et al.

SENSORS AND ACTUATORS B-CHEMICAL (2015)

Article Biochemistry & Molecular Biology

Protein design for pathway engineering

Dawn T. Eriksen et al.

JOURNAL OF STRUCTURAL BIOLOGY (2014)

Review Multidisciplinary Sciences

On the binding affinity of macromolecular interactions: daring to ask why proteins interact

Panagiotis L. Kastritis et al.

JOURNAL OF THE ROYAL SOCIETY INTERFACE (2013)

Article Chemistry, Analytical

Sensitive Localized Surface Plasmon Resonance Multiplexing Protocols

Kun Jia et al.

ANALYTICAL CHEMISTRY (2012)

Review Biophysics

Structural and Energetic Basis of Allostery

Vincent J. Hilser et al.

ANNUAL REVIEW OF BIOPHYSICS, VOL 41 (2012)

Article Chemistry, Analytical

Molecular modeling to rationalize ligand-support interactions in affinity chromatography

Matteo Salvalaglio et al.

JOURNAL OF SEPARATION SCIENCE (2012)

Article Multidisciplinary Sciences

The Monod-Wyman-Changeux allosteric model accounts for the quaternary transition dynamics in wild type and a recombinant mutant human hemoglobin

Matteo Levantino et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Review Pharmacology & Pharmacy

Fluorescence polarization assays in small molecule screening

Wendy A. Lea et al.

EXPERT OPINION ON DRUG DISCOVERY (2011)

Article Biochemistry & Molecular Biology

Biosensor-based small molecule fragment screening with biolayer interferometry

Charles A. Wartchow et al.

JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN (2011)

Article Biochemical Research Methods

Analysis of protein-ligand interactions by fluorescence polarization

Ana M. Rossi et al.

NATURE PROTOCOLS (2011)

Article Biochemistry & Molecular Biology

A structure-based benchmark for protein-protein binding affinity

Panagiotis L. Kastritis et al.

PROTEIN SCIENCE (2011)

Article Biochemical Research Methods

Surface plasmon resonance for high-throughput ligand screening of membrane-bound proteins

Jennifer A. Maynard et al.

Biotechnology Journal (2009)

Article Biochemical Research Methods

Label-Free Detection of Biomolecular Interactions Using BioLayer Interferometry for Kinetic Characterization

Joy Concepcion et al.

COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING (2009)

Review Chemistry, Multidisciplinary

Carbonic anhydrase as a model for biophysical and physical-organic studies of proteins and protein-ligand binding

Vijay M. Krishnamurthy et al.

CHEMICAL REVIEWS (2008)

Review Chemistry, Physical

Energetics in correlation with structural features: The case of micellization

Jurij Lah et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2006)

Review Biochemistry & Molecular Biology

Thermodynamics of protein-ligand interactions: History, presence, and future aspects

R Perozzo et al.

JOURNAL OF RECEPTORS AND SIGNAL TRANSDUCTION (2004)

Article Biochemical Research Methods

Fluorescence polarization: Past, present and future

DM Jameson et al.

COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING (2003)