相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics
Lily C. Hughes et al.
MOLECULAR ECOLOGY RESOURCES (2021)
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
Bui Quang Minh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
Phylogenetic relationships of Cypriniformes and plasticity of pharyngeal teeth in the adaptive radiation of cyprinids
Wenjing Tao et al.
SCIENCE CHINA-LIFE SCIENCES (2019)
OrthoFinder: phylogenetic orthology inference for comparative genomics
David M. Emms et al.
GENOME BIOLOGY (2019)
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
Chao Zhang et al.
BMC BIOINFORMATICS (2018)
Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data
Lily C. Hughes et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Explosive diversification of marine fishes at the Cretaceous-Palaeogene boundary
Michael E. Alfaro et al.
NATURE ECOLOGY & EVOLUTION (2018)
An inverse latitudinal gradient in speciation rate for marine fishes
Daniel L. Rabosky et al.
NATURE (2018)
Phylogenetic classification of extant genera of fishes of the order Cypriniformes (Teleostei: Ostariophysi)
Milton Tan et al.
ZOOTAXA (2018)
TimeTree: A Resource for Timelines, Timetrees, and Divergence Times
Sudhir Kumar et al.
MOLECULAR BIOLOGY AND EVOLUTION (2017)
Phylogenetic classification of bony fishes
Ricardo Betancur-R et al.
BMC EVOLUTIONARY BIOLOGY (2017)
Impact of enrichment conditions on cross-species capture of fresh and degraded DNA
Johanna L. A. Paijmans et al.
MOLECULAR ECOLOGY RESOURCES (2016)
Exon capture phylogenomics: efficacy across scales of divergence
Jason G. Bragg et al.
MOLECULAR ECOLOGY RESOURCES (2016)
Resolving Cypriniformes relationships using an anchored enrichment approach
Carla C. Stout et al.
BMC EVOLUTIONARY BIOLOGY (2016)
Evolution of Venomous Cartilaginous and Ray-Finned Fishes
W. Leo Smith et al.
INTEGRATIVE AND COMPARATIVE BIOLOGY (2016)
ExaBayes: Massively Parallel Bayesian Tree Inference for the Whole-Genome Era
Andre J. Aberer et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
A phylogenomics approach for selecting robust sets of phylogenetic markers
Salvador Capella-Gutierrez et al.
NUCLEIC ACIDS RESEARCH (2014)
A Versatile and Highly Efficient Toolkit Including 102 Nuclear Markers for Vertebrate Phylogenomics, Tested by Resolving the Higher Level Relationships of the Caudata
Xing Xing Shen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Remarkable phylogenetic resolution of the most complex clade of Cyprinidae (Teleostei: Cypriniformes): A proof of concept of homology assessment and partitioning sequence data integrated with mixed model Bayesian analyses
Wenjing Tao et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2013)
Phylogeny and tempo of diversification in the superradiation of spiny-rayed fishes
Thomas J. Near et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
Ruibang Luo et al.
GIGASCIENCE (2012)
phangorn: phylogenetic analysis in R
Klaus Peter Schliep
BIOINFORMATICS (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
Salvador Capella-Gutierrez et al.
BIOINFORMATICS (2009)
Assessing what is needed to resolve a molecular phylogeny: simulations and empirical data from emydid turtles
Phillip Q. Spinks et al.
BMC EVOLUTIONARY BIOLOGY (2009)
Reconstructing the phylogenetic relationships of the earth's most diverse clade of freshwater fishes-order Cypriniformes (Actinopterygii: Ostariophysi): A case study using multiple nuclear loci and the mitochondrial genome
Richard L. Mayden et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2009)
RNF213, a new nuclear marker for acanthomorph phylogeny
Blaise Li et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2009)
Families of Cobitoidea (Teleostei; Cypriniformes) as revealed from nuclear genetic data and the position of the mysterious genera Barbucca, Psilorhynchus, Serpenticobitis and Vaillantella
Vendula Slechtova et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Enhancements and modifications of primer design program Primer3
Triinu Koressaar et al.
BIOINFORMATICS (2007)
Relationships among four genera of mojarras (Teleostei: Perciformes: Gerreidae) from the western Atlantic and their tentative placement among percomorph fishes
W.-J. Chen et al.
JOURNAL OF FISH BIOLOGY (2007)
A practical approach to phylogenomics: the phylogeny of ray-finned fish (Actinopterygii) as a case study
Chenhong Li et al.
BMC EVOLUTIONARY BIOLOGY (2007)
A phylogenetic analysis of the major groups of catfishes (Teleostei: Siluriformes) using rag1 and rag2 nuclear gene sequences
John P. Sullivan et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2006)
Comparison of evolutionary rates in the mitochondrial DNA cytochrome b gene and control region and their implications for phylogeny of the Cobitoidea (Teleostei: Cypriniformes)
QY Tang et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2006)
Further support for the clades obtained by multiple molecular phylogenies in the acanthomorph bush
A Dettai et al.
COMPTES RENDUS BIOLOGIES (2005)
In search of notothenioid (Teleostei) relatives
A Dettaï et al.
ANTARCTIC SCIENCE (2004)
Genome-scale approaches to resolving incongruence in molecular phylogenies
A Rokas et al.
NATURE (2003)